Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 2 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 1 |
| Glu | 1 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 1 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | GGC | Contig13 | 39 | 391242 ..391167 | 0..0 | 82.62 | 67.58 |
| Ala | TGC | Contig13 | 5 | 233419 ..233494 | 0..0 | 90.96 | 78.83 |
| Arg | ACG | Contig13 | 20 | 2193671..2193747 | 0..0 | 86.25 | 70.42 |
| Arg | CCG | Contig13 | 28 | 1770717..1770642 | 0..0 | 84.32 | 56.94 |
| Arg | CCT | Contig13 | 35 | 1286472..1286397 | 0..0 | 78.73 | 47.32 |
| Arg | TCT | Contig13 | 33 | 1329304..1329228 | 0..0 | 89.17 | 66.59 |
| Asn | GTT | Contig13 | 31 | 1569903..1569828 | 0..0 | 84.87 | 59.90 |
| Asp | GTC | Contig13 | 11 | 669942 ..670018 | 0..0 | 94.55 | 73.65 |
| Cys | GCA | Contig13 | 2 | 123441 ..123514 | 0..0 | 66.41 | 47.55 |
| Gln | TTG | Contig13 | 14 | 1179145..1179219 | 0..0 | 76.23 | 51.24 |
| Glu | TTC | Contig13 | 40 | 391141 ..391066 | 0..0 | 61.55 | 32.62 |
| Gly | CCC | Contig13 | 7 | 330649 ..330719 | 0..0 | 73.14 | 56.53 |
| Gly | GCC | Contig13 | 1 | 6613 ..6688 | 0..0 | 93.74 | 68.41 |
| Gly | TCC | Contig13 | 25 | 1913288..1913215 | 0..0 | 82.17 | 64.72 |
| His | GTG | Contig13 | 34 | 1329176..1329101 | 0..0 | 82.63 | 61.86 |
| Ile | GAT | Contig13 | 4 | 233340 ..233416 | 0..0 | 100.23 | 77.52 |
| Leu | CAA | Contig13 | 29 | 1680213..1680127 | 0..0 | 74.49 | 47.06 |
| Leu | CAG | Contig13 | 16 | 1702900..1702984 | 0..0 | 72.70 | 46.30 |
| Leu | GAG | Contig13 | 12 | 948549 ..948633 | 0..0 | 64.80 | 35.40 |
| Leu | TAA | Contig13 | 3 | 123540 ..123628 | 0..0 | 75.67 | 43.55 |
| Leu | TAG | Contig13 | 41 | 210233 ..210148 | 0..0 | 72.91 | 45.74 |
| Lys | TTT | Contig13 | 37 | 972392 ..972317 | 0..0 | 86.05 | 64.26 |
| Met | CAT | Contig13 | 15 | 1531916..1531992 | 0..0 | 85.01 | 60.51 |
| Met | CAT | Contig13 | 17 | 1716702..1716777 | 0..0 | 89.90 | 68.72 |
| Met | CAT | Contig13 | 6 | 309741 ..309817 | 0..0 | 96.19 | 73.23 |
| Phe | GAA | Contig13 | 21 | 2193816..2193891 | 0..0 | 89.38 | 71.20 |
| Pro | CGG | Contig13 | 38 | 841148 ..841072 | 0..0 | 78.58 | 55.46 |
| Pro | GGG | Contig13 | 22 | 2450307..2450231 | 0..0 | 80.93 | 59.26 |
| Pro | TGG | Contig13 | 32 | 1329425..1329349 | 0..0 | 83.20 | 60.50 |
| Ser | CGA | Contig13 | 18 | 1856062..1856154 | 0..0 | 65.57 | 36.49 |
| Ser | GCT | Contig13 | 23 | 2205759..2205667 | 0..0 | 69.50 | 39.62 |
| Ser | GGA | Contig13 | 36 | 1165855..1165765 | 0..0 | 73.12 | 45.32 |
| Ser | TGA | Contig13 | 30 | 1655040..1654953 | 0..0 | 78.22 | 40.87 |
| Thr | CGT | Contig13 | 8 | 594166 ..594241 | 0..0 | 89.05 | 64.42 |
| Thr | GGT | Contig13 | 26 | 1913179..1913105 | 0..0 | 91.25 | 65.32 |
| Thr | TGT | Contig13 | 13 | 1155347..1155422 | 0..0 | 90.02 | 76.16 |
| Trp | CCA | Contig13 | 27 | 1911805..1911730 | 0..0 | 80.36 | 57.49 |
| Tyr | GTA | Contig13 | 24 | 1913485..1913401 | 0..0 | 75.63 | 46.16 |
| Val | CAC | Contig13 | 19 | 1862463..1862537 | 0..0 | 75.72 | 46.12 |
| Val | GAC | Contig13 | 9 | 625149 ..625225 | 0..0 | 93.06 | 68.31 |
| Val | TAC | Contig13 | 10 | 669807 ..669882 | 0..0 | 93.09 | 70.80 |
tRNA Models
Contig13.trna1 (6613-6688) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (6646-6648) Score: 93.74
HMM Sc=68.41 Sec struct Sc=25.33
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna2 (123441-123514) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (123473-123475) Score: 66.41
HMM Sc=47.55 Sec struct Sc=18.86
* | * | * | * | * | * | * |
Seq: GGCGGGGTGGCAGAGTGGTTATGCAGCGGCCTGCAAAGCCGTCTACGCCGGTTCGATTCCGACCCCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....
Contig13.trna3 (123540-123628) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (123574-123576) Score: 75.67
HMM Sc=43.55 Sec struct Sc=32.12
* | * | * | * | * | * | * | * | *
Seq: GCCCGGGTGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGACATAAACGTCCATGCCGGTTCGATTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna4 (233340-233416) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (233374-233376) Score: 100.23
HMM Sc=77.52 Sec struct Sc=22.71
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGGGtCGGTGGTTCAAGTCCACCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna5 (233419-233494) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (233452-233454) Score: 90.96
HMM Sc=78.83 Sec struct Sc=12.13
* | * | * | * | * | * | * | *
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig13.trna6 (309741-309817) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (309775-309777) Score: 96.19
HMM Sc=73.23 Sec struct Sc=22.96
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCAGGGGACTCATAATCCCTTGGtCGTAGGTTCAAGTCCTACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna7 (330649-330719) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (330681-330683) Score: 73.14
HMM Sc=56.53 Sec struct Sc=16.61
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAGGCTTCCCAAGCCTACGACGAGGGTTCGATTCCCTTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig13.trna8 (594166-594241) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (594199-594201) Score: 89.05
HMM Sc=64.42 Sec struct Sc=24.63
* | * | * | * | * | * | * | *
Seq: GCCGCAGTAACTCAGTTGGTAGAGTAGCTGATTCGTAATCAGCAAGtCGGAGGTTCGACTCCTCTCTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna9 (625149-625225) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (625183-625185) Score: 93.06
HMM Sc=68.31 Sec struct Sc=24.75
* | * | * | * | * | * | * | *
Seq: AGGCGCGTAGCTCAGCTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna10 (669807-669882) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (669840-669842) Score: 93.09
HMM Sc=70.80 Sec struct Sc=22.29
* | * | * | * | * | * | * | *
Seq: GGGTGCTTAGCTCAGCTGGTAGAGCGTCGCCCTTACAAGGCGAATGtCGGCGGTTCGATCCCGTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna11 (669942-670018) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (669976-669978) Score: 94.55
HMM Sc=73.65 Sec struct Sc=20.90
* | * | * | * | * | * | * | *
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna12 (948549-948633) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (948583-948585) Score: 64.80
HMM Sc=35.40 Sec struct Sc=29.40
* | * | * | * | * | * | * | * |
Seq: GCCGACGTGGTGGAATTGGTaGACACGCCGTCTTGAGGGGGCGGTGGCGAAAGCTGTGCGAGTTCGATTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna13 (1155347-1155422) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (1155380-1155382) Score: 90.02
HMM Sc=76.16 Sec struct Sc=13.86
* | * | * | * | * | * | * | *
Seq: GCCGGCATAGCTCAGTTGGTAGAGCAGCTGATTTGTAATCAGAAGGtCGCGAGTTCGATTCTTGCTGTCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig13.trna14 (1179145-1179219) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1179177-1179179) Score: 76.23
HMM Sc=51.24 Sec struct Sc=24.99
* | * | * | * | * | * | * |
Seq: TGGGGAGTCGCCAAGTGGTAAGGCACCGGATTTTGATTCCGGCATtCGTAGGTTCGATCCCTACCTCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna15 (1531916-1531992) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1531950-1531952) Score: 85.01
HMM Sc=60.51 Sec struct Sc=24.50
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig13.trna16 (1702900-1702984) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (1702934-1702936) Score: 72.70
HMM Sc=46.30 Sec struct Sc=26.40
* | * | * | * | * | * | * | * |
Seq: GCCCAGATGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCCTTCGGGTGTGGAGGTTCGAGTCCTCTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna17 (1716702-1716777) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (1716735-1716737) Score: 89.90
HMM Sc=68.72 Sec struct Sc=21.18
* | * | * | * | * | * | * | *
Seq: GGCGAATTAGCTCAGTGGTtAGAGCAGCGGAATCATAATCCGTTGGtCCGGGGTTCAAATCCCTGATTCGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna18 (1856062-1856154) Length: 93 bp
Type: Ser Anticodon: CGA at 36-38 (1856097-1856099) Score: 65.57
HMM Sc=36.49 Sec struct Sc=29.08
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTACCGAAGTGGCcatAACGGCGCTGACTCGAAATCAGATGGTCAGGATTTCCTGGCACGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna19 (1862463-1862537) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1862495-1862497) Score: 75.72
HMM Sc=46.12 Sec struct Sc=29.60
* | * | * | * | * | * | * |
Seq: AGGCGGTTAACTCAGCGGTAGAGTGCCACCTTCACACGGTGGAAGtCATTGGTTCAATTCCAATACCGTCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna20 (2193671-2193747) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (2193705-2193707) Score: 86.25
HMM Sc=70.42 Sec struct Sc=15.83
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna21 (2193816-2193891) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (2193849-2193851) Score: 89.38
HMM Sc=71.20 Sec struct Sc=18.18
* | * | * | * | * | * | * | *
Seq: GGCCAAGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTTGTGtCGGTGGTTCGATTCCGCCCTTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna22 (2450307-2450231) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (2450273-2450271) Score: 80.93
HMM Sc=59.26 Sec struct Sc=21.67
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGTCtGGTAGCGTACTTGCATGGGGTGCAAGTGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna23 (2205759-2205667) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (2205725-2205723) Score: 69.50
HMM Sc=39.62 Sec struct Sc=29.88
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGCCGAGAGGTcgAAGGCGCTCCCCTGCTAAGGGAGTATAGGCTCAAAaAGCTTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig13.trna24 (1913485-1913401) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (1913451-1913449) Score: 75.63
HMM Sc=46.16 Sec struct Sc=29.47
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGTGGTtaAAGGGATCAGACTGTAAATCTGACGGCTCTGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<....
Contig13.trna25 (1913288-1913215) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1913256-1913254) Score: 82.17
HMM Sc=64.72 Sec struct Sc=17.45
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna26 (1913179-1913105) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (1913147-1913145) Score: 91.25
HMM Sc=65.32 Sec struct Sc=25.93
* | * | * | * | * | * | * |
Seq: GCCCATGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGCCAGTTCAATCCTGGCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna27 (1911805-1911730) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (1911772-1911770) Score: 80.36
HMM Sc=57.49 Sec struct Sc=22.87
* | * | * | * | * | * | * | *
Seq: AGGCCAGTAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGGGGGTTCGATGCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna28 (1770717-1770642) Length: 76 bp
Type: Arg Anticodon: CCG at 34-36 (1770684-1770682) Score: 84.32
HMM Sc=56.94 Sec struct Sc=27.38
* | * | * | * | * | * | * | *
Seq: GCGCCCATAGCTCAGTGGAtAGAGTACCGCCCTCCGAAGGCGGGGGtCGCACGTTCGAATCGTGCTGGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna29 (1680213-1680127) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (1680179-1680177) Score: 74.49
HMM Sc=47.06 Sec struct Sc=27.43
* | * | * | * | * | * | * | * | *
Seq: GCCGGGATGGCGGAATTGGTaGACGCACGGGACTCAAAATCCCGCGAGGGCGACTTCATGGGGGTTCGATTCCCCCTCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna30 (1655040-1654953) Length: 88 bp
Type: Ser Anticodon: TGA at 35-37 (1655006-1655004) Score: 78.22
HMM Sc=40.87 Sec struct Sc=37.35
* | * | * | * | * | * | * | * | *
Seq: GGAAGAGTGGCCGAGTGGTtgAAGGCACTGGTCTTGAAAACCAGCAACAGGAAACTGTTCGTGGGTTCGAATCCCACCTCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna31 (1569903-1569828) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1569870-1569868) Score: 84.87
HMM Sc=59.90 Sec struct Sc=24.97
* | * | * | * | * | * | * | *
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig13.trna32 (1329425-1329349) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (1329391-1329389) Score: 83.20
HMM Sc=60.50 Sec struct Sc=22.70
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGTAGCCtGGTAGCGCGCCTGGTTTGGGACCAGGATGtCGGGAGTTCAAATCTCTCCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna33 (1329304-1329228) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1329270-1329268) Score: 89.17
HMM Sc=66.59 Sec struct Sc=22.58
* | * | * | * | * | * | * | *
Seq: GTGCCCGTAGCTCAACCGGAtAGAGCACCAGCCTTCTAAGCTGGGGGtTACAGGTTCGATTCCTGTCGGGCACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna34 (1329176-1329101) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (1329143-1329141) Score: 82.63
HMM Sc=61.86 Sec struct Sc=20.77
* | * | * | * | * | * | * | *
Seq: GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTTGtCGTGGGTTCGAGTCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna35 (1286472-1286397) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (1286439-1286437) Score: 78.73
HMM Sc=47.32 Sec struct Sc=31.41
* | * | * | * | * | * | * | *
Seq: GCCCTGGTAGCTCAGGGGAtAGAGCAACCCCCTCCTAAGGGGTAGGtCGGACGTTCGATTCGTCTCCAGGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna36 (1165855-1165765) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (1165821-1165819) Score: 73.12
HMM Sc=45.32 Sec struct Sc=27.80
* | * | * | * | * | * | * | * | * |
Seq: GGAGAAGTGACCGAGTGGCtgAAGGTGCACGCCTGGAAAGCGTGTGTACGGTAATaCCGTACCGCGGGTTCGAATCCCGCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig13.trna37 (972392-972317) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (972359-972357) Score: 86.05
HMM Sc=64.26 Sec struct Sc=21.79
* | * | * | * | * | * | * | *
Seq: GGGTCGTTAGCTCAGCCGGTAGAGCAGCGGACTTTTAATCCGTTGGtCGCGCGTTCGAATCGCGCACGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna38 (841148-841072) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (841114-841112) Score: 78.58
HMM Sc=55.46 Sec struct Sc=23.12
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGAGcCGGAGGTTCAAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna39 (391242-391167) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (391209-391207) Score: 82.62
HMM Sc=67.58 Sec struct Sc=15.04
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna40 (391141-391066) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (391107-391105) Score: 61.55
HMM Sc=32.62 Sec struct Sc=28.93
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACACCACCCTTTCACGGTGGGTACAGGGGTTCGAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna41 (210233-210148) Length: 86 bp
Type: Leu Anticodon: TAG at 35-37 (210199-210197) Score: 72.91
HMM Sc=45.74 Sec struct Sc=27.17
* | * | * | * | * | * | * | * | *
Seq: GCGAAAGTGGCGGAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGATGaGGTGTGGGGGTTCGAGTCCCCCCTTTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
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