Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig13	RNAmmer-1.2	rRNA	236595	236706	97.1	+	.	5s_rRNA	
 Contig13	RNAmmer-1.2	rRNA	233645	236526	3484.1	+	.	23s_rRNA	
 Contig13	RNAmmer-1.2	rRNA	231716	233240	1914.4	+	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig13_236595-236706_DIR+ /molecule=5s_rRNA /score=97.1
 TGGCGGCCATAGCGCTTTGGACCCACCTTTTCCCATCCCGAACAGAGAAGTGAAACGAAG
 CAGCGCCGATGATAGTATGTTTTCACATGTGAAAGTAGGTCACCGCCAAGCT
 >rRNA_Contig13_233645-236526_DIR+ /molecule=23s_rRNA /score=3484.1
 TCAAGCGAACAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGGA
 AGCCTGCGAAAAGCTCCGGGGAGCTGGCAATAAGCTTTGATCCGGAGATGTCCGAATGGG
 GAAACCCACCCGTAAGGGTAATCACTCCTGAATATATAGGGGGTTGATGGCTAACCTGGT
 GAACTGAAACATCTAAGTAGCCAGAGGAAAAGAAATCAAAAGAGATTCCCAGAGTAGCGG
 CGAGCGAAATGGGAGCAGCCGGTAATATTTAGTATTTGAATTAATCGAATTATCTGGAAA
 GTTAAACCGTAGTGGGTGATAGTCCCGTAGATAAAAATTCAAGTATGGAACTAAGATTAC
 GCAAAGTAGGGCGGGGCACGTGAAATCCTGTCTGAATATAGGGGGACCATCCTCTAAGGC
 TAAATACTCGTAATCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCC
 CGGGAGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTGGGAGCCTCGCAA
 GGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTACATTCAGTAGCAAGCTTAA
 CCGATAGGGGAGGCGTAGTGAAAACGAGTCTTAATAGGGCGATAAGTTGCTGGGTGTAGA
 CCCGAAACCAGATGATCTACCCATGGCCAGGATGAAGCGAGGGTAATGCTTCGTGGAGGT
 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA
 CAAATCTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCATATATCATT
 TTTGGGGGTAGAGCACTGTTATGGCTAGGGGGTCGTCAAGACTTACCAAACCATTGCAAA
 CTCCGAATACCAAAAAATGTAAGTATGGGAGACAGACATCGGGTGCTAACGTTCGGTGTC
 GAGAGGGAAACAACCCAGACCTTCAGCTAAGGTCCCAAAGATACAGTTAAGTGGTAAACG
 AAGTGGGAAGGCATAGACAGTCAGGAAGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAG
 CGTAATAGCTCACTGATCGAGTCGTCCTGCGCGGAAGATGTAACGGGGCTAAACTGTACA
 CCGAAGCTAAGGACTTGCAATTAGTTGCAAGTGGTAGGAGAGCGTTCCGTAGGCCTGTGA
 AGGTGATTTGTGAAGATTGCTGGAGGTATCGGAAGTGCGAATGCTGACATGAGTAGCGAT
 AAAGGAAGTGAAAAGCTTCCTCGCCGAAAACCCAAGGTTTCCTGTGCAACGTTCATCGGC
 GCAGGGTTAGTCGGCTCCTAAGGTGAGGCAGAGATGCGTAGCTGATGGGAAACTGGTTAA
 TATTCCAGTACCTTTATTTAATGCGATGCGGGGACGAAGAAGGCTAGCTTAGCCGGGTGT
 TGGATGTCCCGGTTGAAGCAGGTAGACATGCTATCTAGGAAAATCCGGATGGCTAAGTTG
 AGATGTGATAACGAAACTTCCTTAGGGAAGCCAAGTAAGTAATGCCATGCTTCCAGGAAA
 AGCCGCTAAGCTTCAGTTAAATAAAGACCGTACCGTAAACCGACACAGGTGGGAAGGATG
 AGAATTCTAAGGCGCTTGAGAGAACTCAGGAGAAGGAACTCGGCAAATTGACACCGTAAC
 TTCGGGAGAAGGTGTGCCTTTAGTATGTAAAGTACTTCGCGTATGGAGCAGAAAAAGGTT
 GCAATAAAATGGTGGCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGT
 GGACGTATAGAGTGTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGATGGGGTGCAAGCTC
 TTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTC
 CTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCT
 GAGACTCAGCGAAGTTGAAATGGTTGTGAAGATGCAATCTACCCGCGGCTAGACGGAAAG
 ACCCCGTGCACCTTTACTGTAGCTTTACATTGGATTTTGATTATTCTTGTGTAGGATAGG
 TGGGAGGCTGTGATATATGCTCGCTAGAGTATATGGAGCCAACCTTGAAATACCACCCTG
 GAATGGTCGGAATTCTAACTCAGGTCCATAATCTGGATCGAGGACCGTGTATGGTAGGCA
 GTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGTGCGAAGGTACGCTAGGTA
 CGGTCGGAAATCGTGCTGATAGTGCAATGGCATAAGCGTGCTTAACTGCGAGACTGACAA
 GTCGAGCAGATGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCG
 CTCAACGGATAAAAGGTACGCCGGGGATAACAGGCTGATTCCTCCCAAGAGTTCATATCG
 ACGGGGGAGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGTAGTCGGTCCCA
 AGGGTATGGCTGTTCGCCATTTAAAGTGGTACGTGAGCTGGGTTTAAAACGTCGTGAGAC
 AGTTTGGTCCCTATCTGCCGTGGGCGTTGGAAATTTGAGTGGGGCTGCTCCTAGTACGAG
 AGGACCGGAGTGGACGCACCTCTGGTGTACCGGTTGTGACGCCAGTCGTATCGCCGGGTA
 GCTAAGTGCGGGAGAGATAACCGCTGAAAGCATCTAAGCGGGAAACTTGCCATAAGATTA
 GATTTCCCGGGAGTATAACTCCCCTGAAGGTTCGTTGGAGACTACAACGTTGATAGGTCG
 AATGTGGAAGCGCAGTAATGCGTTGAGCTAATCGATACTAATTGACCGTGAGGCTTGATC
 CT
 >rRNA_Contig13_231716-233240_DIR+ /molecule=16s_rRNA /score=1914.4
 AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGCAAGTCGAAC
 GGCAGCGGGGGCTTCGGCCTGCCGGCGAGTGGCGAACGGGTGAGTAATACATCGGAACGT
 GTCCTTAAGTGGGGAATAACGCATCGAAAGATGTGCTAATACCGCATATCTCTCAGGAGG
 AAAGCAGGGGATCGAAAGACCTTGCGCTAAAGGAGCGGCTGATGTCTGATTAGCTAGTTG
 GTGGGGTAAAGGCTTACCAAGGCAACGATCAGTAGCTGGTCTGAGAGGACGACCAGCCAC
 ACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAA
 TGGGCGAAAGCCTGATCCAGCCATGCCGCGTGAGTGAAGAAGGCCTTCGGGTTGTAAAGC
 TCTTTTAGTCGGAAAGAAAGAGTCATAGTAAATAGCTATGATTTATGACGGTACCGACAG
 AAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAA
 TCGGAATTACTGGGCGTAAAGGGTGCGCAGGCGGCCTTGTAAGTCAGATGTGAAAGCCCC
 GGGCTTAACCTGGGAATTGCGTTTGAAACTACAAAGCTAGAGTGCAGCAGAGGGGAGTGG
 AATTCCATGTGTAGCAGTGAAATGCGTAGAGATGTGGAAGAACACCGATGGCGAAGGCAG
 CTCCCTGGGTTGACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA
 CCCTGGTAGTCCACGCCCTAAACTATGTCAACTAGTTGTCGGATCTAATTAAGGATTTGG
 TAACGTAGCTAAAGCGTGAAGTTGACCGCCTGGGGAGTACGATCGCAAGATTAAAACTCA
 AAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGTGGATTAATTCGATGCAACGCG
 AAAAACCTTACCTACCCTTGACATGCTTGGAATCTAATGGAGACATAAGAGTGCCCGAAA
 GGGAGCCAAGACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTT
 AAGTCCCGCAACGAGCGCAACCCTTGTCGCTAATTGCTATCATTTTAATGAGCACTTTAG
 CGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTT
 ATGGGTAGGGCTTCACACGTAATACAATGGCGCGTACAGAGGGTTGCCAATCCGCGAGGA
 GGAGCCAATCTCAGAAAGCGCGTCGTAGTCCGGATCGGAGTCTGCAACTCGACTCCGTGA
 AGTCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTG
 TACACACCGCCCGTCACACCATGGGAGTGATTTTCACCAGAAGCAGGTAGTTTAACCGCA
 AGGAGGGCGCTTGCCACGGTGGGGGTCATGACTGGGGTGAAGTCGTAACAAGGTAGCCGT
 AGGGGAACCTGCGGCTGGATCACCT