Cell Motility and Secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type uncharacterized transport system involved in gliding motility auxiliary component	N	Contig13	Neut2511	COG3225	66	6e-12
Chemotaxis protein	N	Contig13	Neut1275	COG3143	127	6e-31
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut0219	COG0643	50	8e-07
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut0746	COG0643	62	7e-11
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut1162	COG0643	355	2e-98
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut1167	COG0643	610	1.0e-175
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut1168	COG0643	45	3e-06
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut1361	COG0643	47	3e-06
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut1763	COG0643	60	5e-10
Chemotaxis protein histidine kinase and related kinase	N	Contig13	Neut2385	COG0643	41	5e-05
Chemotaxis protein; stimulates methylation of MCP protein	N	Contig13	Neut1172	COG1871	168	3e-43
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0018	COG2201	43	2e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0040	COG2201	73	2e-14
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0138	COG2201	43	6e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0219	COG2201	39	0.002
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0387	COG2201	64	2e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0420	COG2201	41	4e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut0747	COG2201	49	6e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1019	COG2201	65	9e-12
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1130	COG2201	66	1e-12
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1162	COG2201	72	3e-13
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1173	COG2201	385	1.0e-108
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1251	COG2201	41	4e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1276	COG2201	62	1e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1362	COG2201	42	4e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1416	COG2201	50	3e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1564	COG2201	56	2e-09
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut1839	COG2201	73	1e-14
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut2082	COG2201	57	1e-09
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut2285	COG2201	37	0.003
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	Contig13	Neut2386	COG2201	72	9e-15
Chemotaxis signal transduction protein	N	Contig13	Neut1167	COG0835	43	7e-05
Chemotaxis signal transduction protein	N	Contig13	Neut1168	COG0835	145	2e-36
Chemotaxis signal transduction protein	N	Contig13	Neut2385	COG0835	63	1e-11
Flagellar basal body rod protein	N	Contig13	Neut0335	COG4786	34	0.005
Flagellar basal body rod protein	N	Contig13	Neut0336	COG4786	42	2e-05
Flagellar basal body rod protein	N	Contig13	Neut0338	COG4787	58	1e-09
Flagellar basal body rod protein	N	Contig13	Neut0338	COG4786	115	7e-27
Flagellar basal body rod protein	N	Contig13	Neut0339	COG4787	267	7e-73
Flagellar basal body rod protein	N	Contig13	Neut0339	COG4786	157	6e-40
Flagellar basal body rod protein	N	Contig13	Neut0340	COG4787	124	6e-30
Flagellar basal body rod protein	N	Contig13	Neut0340	COG4786	312	2e-86
Flagellar basal body rod protein	N	Contig13	Neut0344	COG4786	43	4e-05
Flagellar biogenesis protein	N	Contig13	Neut2058	COG3190	74	5e-15
Flagellar biosynthesis/type III secretory pathway chaperone	N	Contig13	Neut2438	COG3418	35	0.002
Flagellar hook-length control protein	N	Contig13	Neut0740	COG3144	84	3e-17

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar basal body-associated protein	N	Contig13	Neut2055	COG1580	94	6e-21
Flagellar basal body L-ring protein	N	Contig13	Neut0341	COG2063	190	8e-50
Flagellar basal body P-ring biosynthesis protein	N	Contig13	Neut0334	COG1261	125	3e-30
Flagellar basal-body P-ring protein	N	Contig13	Neut0342	COG1706	426	1.0e-120
Flagellar basal body protein	N	Contig13	Neut0335	COG1815	129	7e-32
Flagellar basal body protein	N	Contig13	Neut0336	COG1815	41	3e-05
Flagellar basal body protein	N	Contig13	Neut0338	COG1815	36	0.004
Flagellar basal body protein	N	Contig13	Neut0340	COG1815	40	1e-04
Flagellar basal body rod protein	N	Contig13	Neut0336	COG1558	160	4e-41
Flagellar basal body rod protein	N	Contig13	Neut0338	COG1558	37	0.003
Flagellar basal body rod protein	N	Contig13	Neut0339	COG1558	36	0.003
Flagellar basal body rod protein	N	Contig13	Neut0340	COG1558	50	1e-07
Flagellar basal body rod protein	N	Contig13	Neut0344	COG1558	37	0.003
Flagellar biosynthesis chaperone	N	Contig13	Neut0741	COG2882	62	1e-11
Flagellar biosynthesis pathway component FlhA	N	Contig13	Neut2444	COG1298	847	0.0
Flagellar biosynthesis pathway component FlhB	N	Contig13	Neut0750	COG1377	77	4e-16
Flagellar biosynthesis pathway component FlhB	N	Contig13	Neut2443	COG1377	396	1.0e-111
Flagellar biosynthesis pathway component FliP	N	Contig13	Neut2059	COG1338	276	1e-75
Flagellar biosynthesis pathway component FliQ	N	Contig13	Neut2060	COG1987	85	8e-19
Flagellar biosynthesis pathway component FliR	N	Contig13	Neut2061	COG1684	168	4e-43
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut0275	COG1157	197	2e-51
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut0277	COG1157	246	2e-66
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut0742	COG1157	580	1.0e-167
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut1342	COG1157	35	0.005
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut2013	COG1157	248	8e-67
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut2020	COG1157	230	2e-61
Flagellar biosynthesis/type III secretory pathway ATPase	N	Contig13	Neut2479	COG1157	113	2e-26
Flagellar biosynthesis/type III secretory pathway lipoprotein	N	Contig13	Neut0745	COG1766	397	1.0e-111
Flagellar biosynthesis/type III secretory pathway protein	N	Contig13	Neut0149	COG1317	40	3e-04
Flagellar biosynthesis/type III secretory pathway protein	N	Contig13	Neut0177	COG1317	36	0.004
Flagellar biosynthesis/type III secretory pathway protein	N	Contig13	Neut0743	COG1317	103	2e-23
Flagellar capping protein	N	Contig13	Neut0950	COG1345	217	1e-57
Flagellar GTP-binding protein	N	Contig13	Neut0734	COG1419	41	3e-04
Flagellar GTP-binding protein	N	Contig13	Neut0856	COG1419	36	0.003
Flagellar GTP-binding protein	N	Contig13	Neut1529	COG1419	86	3e-18
Flagellar GTP-binding protein	N	Contig13	Neut1710	COG1419	102	5e-23
Flagellar GTP-binding protein	N	Contig13	Neut2445	COG1419	279	3e-76
Flagellar hook-associated protein	N	Contig13	Neut0336	COG1256	34	0.004
Flagellar hook-associated protein	N	Contig13	Neut0338	COG1256	42	1e-04
Flagellar hook-associated protein	N	Contig13	Neut0340	COG1256	42	7e-05
Flagellar hook-associated protein	N	Contig13	Neut0344	COG1256	239	3e-64
Flagellar hook-basal body protein	N	Contig13	Neut0748	COG1677	67	3e-13
Flagellar hook capping protein	N	Contig13	Neut0337	COG1843	141	4e-35
Flagellar hook protein FlgE	N	Contig13	Neut0338	COG1749	303	2e-83
Flagellar hook protein FlgE	N	Contig13	Neut0339	COG1749	79	3e-16
Flagellar hook protein FlgE	N	Contig13	Neut0340	COG1749	107	9e-25
Flagellar hook protein FlgE	N	Contig13	Neut0344	COG1749	45	1e-05
Flagellar motor component	N	Contig13	Neut0188	COG1291	258	5e-70
Flagellar motor component	N	Contig13	Neut0286	COG1291	39	3e-04
Flagellar motor component	N	Contig13	Neut1509	COG1291	37	8e-04
Flagellar motor protein	N	Contig13	Neut0189	COG1360	169	3e-43
Flagellar motor protein	N	Contig13	Neut0290	COG1360	57	9e-10
Flagellar motor protein	N	Contig13	Neut2403	COG1360	108	3e-25
Flagellar motor protein	N	Contig13	Neut2508	COG1360	56	3e-09
Flagellar motor switch protein	N	Contig13	Neut0744	COG1536	277	1e-75
Flagellar motor switch protein	N	Contig13	Neut2056	COG1868	309	2e-85
Flagellar motor switch protein	N	Contig13	Neut2057	COG1868	46	1e-06
Flagellar motor switch/type III secretory pathway protein	N	Contig13	Neut2056	COG1886	38	8e-04
Flagellar motor switch/type III secretory pathway protein	N	Contig13	Neut2057	COG1886	97	4e-22
Flagellin and related hook-associated protein	N	Contig13	Neut0345	COG1344	113	2e-26
Flagellin and related hook-associated protein	N	Contig13	Neut1824	COG1344	130	3e-31
Flagellin-specific chaperone FliS	N	Contig13	Neut0949	COG1516	112	1e-26
Muramidase (flagellum-specific)	N	Contig13	Neut0343	COG1705	169	4e-43
Predicted ATPase involved in biogenesis of flagella	N	Contig13	Neut0789	COG2874	38	0.001
Predicted ATPase involved in biogenesis of flagella	N	Contig13	Neut1754	COG2874	42	8e-05
Uncharacterized flagellar protein FlaG	N	Contig13	Neut1822	COG1334	59	1e-10

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Methyl-accepting chemotaxis protein	N	Contig13	Neut0219	COG0840	42	2e-04
Methyl-accepting chemotaxis protein	N	Contig13	Neut0388	COG0840	48	3e-06
Methyl-accepting chemotaxis protein	N	Contig13	Neut1161	COG0840	153	5e-38
Methyl-accepting chemotaxis protein	N	Contig13	Neut1169	COG0840	188	1e-48
Methyl-accepting chemotaxis protein	N	Contig13	Neut1170	COG0840	217	3e-57
Methyl-accepting chemotaxis protein	N	Contig13	Neut1444	COG0840	46	7e-06
Methylase of chemotaxis methyl-accepting protein	N	Contig13	Neut0838	COG1352	37	0.005
Methylase of chemotaxis methyl-accepting protein	N	Contig13	Neut1171	COG1352	266	1e-72
Negative regulator of flagellin synthesis (anti-sigma28 factor)	N	Contig13	Neut2439	COG2747	38	1e-04
P pilus assembly protein porin PapC	N	Contig13	Neut0896	COG3188	35	0.005
Rod binding protein	N	Contig13	Neut0343	COG3951	97	1e-21
Tfp pilus assembly protein ATPase PilM	N	Contig13	Neut0241	COG4972	72	7e-14
Tfp pilus assembly protein ATPase PilM	N	Contig13	Neut1592	COG4972	38	0.001
Tfp pilus assembly protein ATPase PilM	N	Contig13	Neut1807	COG4972	297	1e-81
Tfp pilus assembly protein ATPase PilU	N	Contig11	Neut2629	COG5008	48	2e-06
Tfp pilus assembly protein ATPase PilU	N	Contig12	Neut2555	COG5008	65	1e-11
Tfp pilus assembly protein ATPase PilU	N	Contig13	Neut0508	COG5008	100	2e-22
Tfp pilus assembly protein ATPase PilU	N	Contig13	Neut2128	COG5008	111	2e-25
Tfp pilus assembly protein ATPase PilU	N	Contig13	Neut2337	COG5008	562	1.0e-161
Tfp pilus assembly protein ATPase PilU	N	Contig13	Neut2338	COG5008	345	2e-96
Tfp pilus assembly protein FimT	N	Contig13	Neut0506	COG4970	42	2e-05
Tfp pilus assembly protein FimT	N	Contig13	Neut0514	COG4970	47	6e-07
Tfp pilus assembly protein FimT	N	Contig13	Neut0515	COG4970	44	6e-06
Tfp pilus assembly protein FimT	N	Contig13	Neut1832	COG4970	48	2e-07
Tfp pilus assembly protein FimT	N	Contig13	Neut1837	COG4970	113	6e-27
Tfp pilus assembly protein FimT	N	Contig13	Neut1842	COG4970	49	1e-07
Tfp pilus assembly protein FimV	N	Contig13	Neut1149	COG3170	177	2e-45
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut0506	COG4969	46	7e-07
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut0514	COG4969	45	3e-06
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut0515	COG4969	41	4e-05
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut1832	COG4969	52	2e-08
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut1837	COG4969	46	1e-06
Tfp pilus assembly protein major pilin PilA	N	Contig13	Neut1842	COG4969	72	2e-14
Tfp pilus assembly protein PilE	N	Contig13	Neut0506	COG4968	56	1e-09
Tfp pilus assembly protein PilE	N	Contig13	Neut0514	COG4968	52	2e-08
Tfp pilus assembly protein PilE	N	Contig13	Neut0515	COG4968	58	4e-10
Tfp pilus assembly protein PilE	N	Contig13	Neut1832	COG4968	105	1e-24
Tfp pilus assembly protein PilE	N	Contig13	Neut1835	COG4968	37	0.002
Tfp pilus assembly protein PilE	N	Contig13	Neut1837	COG4968	52	2e-08
Tfp pilus assembly protein PilE	N	Contig13	Neut1842	COG4968	59	1e-10
Tfp pilus assembly protein PilF	N	Contig13	Neut0517	COG3063	43	5e-05
Tfp pilus assembly protein PilF	N	Contig13	Neut1040	COG3063	37	0.002
Tfp pilus assembly protein PilF	N	Contig13	Neut1635	COG3063	38	0.001
Tfp pilus assembly protein PilF	N	Contig13	Neut2072	COG3063	66	1e-11
Tfp pilus assembly protein PilF	N	Contig13	Neut2105	COG3063	38	6e-04
Tfp pilus assembly protein PilF	N	Contig13	Neut2170	COG3063	154	5e-39
Tfp pilus assembly protein PilN	N	Contig13	Neut0510	COG3166	36	0.001
Tfp pilus assembly protein PilN	N	Contig13	Neut1806	COG3166	122	1e-29
Tfp pilus assembly protein PilO	N	Contig13	Neut0511	COG3167	34	0.007
Tfp pilus assembly protein PilO	N	Contig13	Neut1805	COG3167	168	3e-43
Tfp pilus assembly protein PilP	N	Contig13	Neut1804	COG3168	127	4e-31
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig11	Neut2629	COG2805	62	7e-11
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig12	Neut2555	COG2805	64	2e-11
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig13	Neut0508	COG2805	160	4e-40
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig13	Neut2128	COG2805	158	1e-39
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig13	Neut2337	COG2805	388	1.0e-109
Tfp pilus assembly protein pilus retraction ATPase PilT	N	Contig13	Neut2338	COG2805	537	1.0e-154
Tfp pilus assembly protein PilV	N	Contig13	Neut1832	COG4967	36	0.001
Tfp pilus assembly protein PilV	N	Contig13	Neut1836	COG4967	62	2e-11
Tfp pilus assembly protein PilW	N	Contig13	Neut0515	COG4966	38	4e-04
Tfp pilus assembly protein PilW	N	Contig13	Neut1835	COG4966	88	1e-18
Tfp pilus assembly protein PilX	N	Contig13	Neut1834	COG4726	102	5e-23
Tfp pilus assembly protein tip-associated adhesin PilY1	N	Contig13	Neut1833	COG3419	390	1.0e-109
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig11	Neut2629	COG2804	63	3e-11
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig12	Neut2555	COG2804	71	9e-14
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut0508	COG2804	488	1.0e-139
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut0654	COG2804	35	0.007
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut0734	COG2804	37	0.004
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut2128	COG2804	427	1.0e-120
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut2337	COG2804	163	2e-41
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	Contig13	Neut2338	COG2804	182	3e-47
Type II secretory pathway component PulD	N	Contig13	Neut0513	COG1450	138	1e-33
Type II secretory pathway component PulD	N	Contig13	Neut1803	COG1450	149	5e-37
Type II secretory pathway component PulF	N	Contig13	Neut0507	COG1459	286	2e-78
Type II secretory pathway component PulF	N	Contig13	Neut1043	COG1459	382	1.0e-107
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	N	Contig13	Neut1044	COG1989	132	4e-32
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut0506	COG2165	92	2e-20
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut0514	COG2165	72	2e-14
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut0515	COG2165	67	8e-13
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut0516	COG2165	54	9e-09
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut1832	COG2165	59	1e-10
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut1835	COG2165	37	0.003
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut1837	COG2165	47	1e-06
Type II secretory pathway pseudopilin PulG	N	Contig13	Neut1842	COG2165	51	3e-08
Type IV secretory pathway TrbD protein	N	Contig12	Neut2553	COG5268	70	3e-14
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig11	Neut2629	COG0630	185	5e-48
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig12	Neut2555	COG0630	148	6e-37
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig13	Neut0508	COG0630	92	9e-20
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig13	Neut1661	COG0630	36	0.008
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig13	Neut2128	COG0630	78	2e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig13	Neut2337	COG0630	74	2e-14
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	Contig13	Neut2338	COG0630	74	1e-14

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