DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig13	Neut0644	COG0122	52	3e-08
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig13	Neut1221	COG0122	186	3e-48
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig13	Neut2309	COG0122	39	5e-04
3-methyladenine DNA glycosylase	L	Contig13	Neut0993	COG2094	198	3e-52
5'-3' exonuclease (including N-terminal domain of PolI)	L	Contig13	Neut0778	COG0258	272	1e-73
Adenine specific DNA methylase Mod	L	Contig11	Neut2604	COG2189	92	2e-19
Adenine specific DNA methylase Mod	L	Contig12	Neut2546	COG2189	92	2e-19
A/G-specific DNA glycosylase	L	Contig13	Neut0644	COG1194	84	7e-18
A/G-specific DNA glycosylase	L	Contig13	Neut1221	COG1194	42	1e-04
A/G-specific DNA glycosylase	L	Contig13	Neut2309	COG1194	354	7e-99
Alkylated DNA repair protein	L	Contig13	Neut1349	COG3145	97	1e-21
Antirestriction protein	L	Contig12	Neut2583	COG4227	293	3e-80
ATPase involved in DNA repair	L	Contig13	Neut0063	COG0419	34	0.008
ATPase involved in DNA repair	L	Contig13	Neut0201	COG0419	37	0.007
ATPase involved in DNA repair	L	Contig13	Neut0236	COG0419	39	3e-04
ATPase involved in DNA repair	L	Contig13	Neut0315	COG0419	38	0.003
ATPase involved in DNA repair	L	Contig13	Neut0414	COG0419	53	1e-07
ATPase involved in DNA repair	L	Contig13	Neut0504	COG0419	49	7e-07
ATPase involved in DNA repair	L	Contig13	Neut0628	COG0419	38	8e-04
ATPase involved in DNA repair	L	Contig13	Neut0718	COG0419	36	0.004
ATPase involved in DNA repair	L	Contig13	Neut0734	COG0419	40	0.001
ATPase involved in DNA repair	L	Contig13	Neut0767	COG0497	529	1.0e-151
ATPase involved in DNA repair	L	Contig13	Neut0767	COG0419	45	2e-05
ATPase involved in DNA repair	L	Contig13	Neut0851	COG0419	48	7e-07
ATPase involved in DNA repair	L	Contig13	Neut0856	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig13	Neut0890	COG0419	46	7e-06
ATPase involved in DNA repair	L	Contig13	Neut0918	COG0419	48	1e-06
ATPase involved in DNA repair	L	Contig13	Neut0970	COG0419	40	8e-04
ATPase involved in DNA repair	L	Contig13	Neut0974	COG0419	44	1e-05
ATPase involved in DNA repair	L	Contig13	Neut1009	COG0419	45	2e-05
ATPase involved in DNA repair	L	Contig13	Neut1024	COG0419	47	2e-06
ATPase involved in DNA repair	L	Contig13	Neut1035	COG0419	43	8e-05
ATPase involved in DNA repair	L	Contig13	Neut1279	COG0419	34	0.002
ATPase involved in DNA repair	L	Contig13	Neut1328	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig13	Neut1342	COG0419	47	8e-07
ATPase involved in DNA repair	L	Contig13	Neut1397	COG0497	39	0.001
ATPase involved in DNA repair	L	Contig13	Neut1397	COG0419	38	0.003
ATPase involved in DNA repair	L	Contig13	Neut1516	COG0419	46	2e-06
ATPase involved in DNA repair	L	Contig13	Neut1528	COG0419	54	8e-09
ATPase involved in DNA repair	L	Contig13	Neut1643	COG0419	46	2e-06
ATPase involved in DNA repair	L	Contig13	Neut1653	COG0419	41	2e-04
ATPase involved in DNA repair	L	Contig13	Neut1704	COG0419	45	4e-06
ATPase involved in DNA repair	L	Contig13	Neut1764	COG0419	44	5e-05
ATPase involved in DNA repair	L	Contig13	Neut1936	COG0419	45	4e-06
ATPase involved in DNA repair	L	Contig13	Neut2011	COG0419	54	1e-08
ATPase involved in DNA repair	L	Contig13	Neut2053	COG0419	35	0.007
ATPase involved in DNA repair	L	Contig13	Neut2122	COG0497	48	6e-06
ATPase involved in DNA repair	L	Contig13	Neut2122	COG0419	75	3e-14
ATPase involved in DNA repair	L	Contig13	Neut2235	COG0419	55	7e-09
ATPase involved in DNA repair	L	Contig13	Neut2425	COG0419	209	1e-54
ATPase involved in DNA repair	L	Contig13	Neut2441	COG0419	41	3e-04
ATPase involved in DNA repair	L	Contig13	Neut2459	COG0419	55	3e-08
ATPase involved in DNA repair	L	Contig13	Neut2462	COG0419	43	8e-05
ATPase involved in DNA repair	L	Contig13	Neut2491	COG0419	43	2e-05
ATPase involved in DNA repair	L	Contig13	Neut2509	COG0419	38	8e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0201	COG2256	50	6e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0202	COG2256	47	3e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0284	COG2256	90	2e-19
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0590	COG2256	96	7e-21
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0611	COG2256	40	4e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0734	COG2256	44	4e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0970	COG2256	49	1e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0974	COG2256	34	0.008
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut0998	COG2256	52	2e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut1384	COG2256	54	2e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut2048	COG2256	58	3e-09
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig13	Neut2490	COG2256	571	1.0e-164
ATP-dependent DNA ligase homolog of eukaryotic ligase III	L	Contig13	Neut1967	COG1423	54	8e-09
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig13	Neut1357	COG0507	317	1e-87
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig11	Neut2605	COG1074	155	2e-38
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig12	Neut2545	COG1074	155	2e-38
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig13	Neut0773	COG1074	194	2e-50
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig13	Neut1356	COG1074	676	0.0
ATP-dependent nuclease subunit B	L	Contig13	Neut0773	COG3857	46	1e-05
Bacterial nucleoid DNA-binding protein	L	Contig13	Neut0401	COG0776	110	2e-26
Bacterial nucleoid DNA-binding protein	L	Contig13	Neut0661	COG0776	110	3e-26
Bacterial nucleoid DNA-binding protein	L	Contig13	Neut2325	COG0776	110	2e-26

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	Contig13	Neut0543	COG0470	51	2e-07
ATPase involved in DNA replication	L	Contig13	Neut0590	COG0470	45	2e-05
ATPase involved in DNA replication initiation	L	Contig13	Neut0001	COG0593	433	1.0e-122
ATPase involved in DNA replication initiation	L	Contig13	Neut0284	COG0593	41	2e-04
ATPase involved in DNA replication initiation	L	Contig13	Neut0895	COG0593	34	0.008
ATPase involved in DNA replication initiation	L	Contig13	Neut0998	COG0593	41	2e-04
ATPase involved in DNA replication initiation	L	Contig13	Neut1384	COG0593	36	0.007
ATPase involved in DNA replication initiation	L	Contig13	Neut1655	COG0593	39	5e-04
ATPase involved in DNA replication initiation	L	Contig13	Neut2247	COG0593	133	1e-32
ATPase involved in DNA replication initiation	L	Contig13	Neut2490	COG0593	50	5e-07
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig13	Neut0778	COG0749	759	0.0
DNA primase	L	Contig13	Neut0299	COG0358	416	1.0e-117
DNA replication protein	L	Contig13	Neut0001	COG1484	48	2e-06
DNA replication protein	L	Contig13	Neut0284	COG1484	35	0.006
DNA replication protein	L	Contig13	Neut2247	COG1484	38	7e-04
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig13	Neut0946	COG0272	906	0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig13	Neut0129	COG1198	75	2e-14
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig13	Neut1082	COG1198	55	1e-08
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig13	Neut1558	COG1198	59	1e-09
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig13	Neut1682	COG1198	717	0.0
Replicative DNA helicase	L	Contig13	Neut1754	COG0305	39	6e-04
Replicative DNA helicase	L	Contig13	Neut2378	COG0305	536	1.0e-153
Ribonuclease HI	L	Contig13	Neut2176	COG0328	187	3e-49
Ribonuclease HII	L	Contig13	Neut2024	COG0164	205	2e-54
Ribonuclease HIII	L	Contig13	Neut2024	COG1039	48	6e-07
Single-stranded DNA-binding protein	L	Contig13	Neut0117	COG0629	76	7e-16
Single-stranded DNA-binding protein	L	Contig13	Neut2461	COG0629	145	2e-36
Topoisomerase IA	L	Contig13	Neut0116	COG0550	486	1.0e-138
Topoisomerase IA	L	Contig13	Neut0396	COG0550	458	1.0e-130
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig13	Neut0734	COG0188	40	8e-04
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig13	Neut1573	COG0188	1041	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig13	Neut0003	COG0187	873	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig13	Neut1828	COG0187	39	0.001

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut0590	COG1474	39	8e-04
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut0654	COG1474	37	0.002
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut0895	COG1474	43	2e-05
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut0998	COG1474	37	0.005
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut1384	COG1474	36	0.005
Cdc6-related protein AAA superfamily ATPase	L	Contig13	Neut2490	COG1474	52	1e-07
DNA mismatch repair enzyme (predicted ATPase)	L	Contig13	Neut1828	COG0323	608	1.0e-175
DNA modification methylase	L	Contig11	Neut2604	COG0863	62	2e-10
DNA modification methylase	L	Contig12	Neut2546	COG0863	62	2e-10
DNA or RNA helicase of superfamily II	L	Contig11	Neut2603	COG1061	38	0.003
DNA or RNA helicase of superfamily II	L	Contig12	Neut2547	COG1061	38	0.003
DNA or RNA helicase of superfamily II	L	Contig12	Neut2561	COG1061	102	2e-22
DNA or RNA helicase of superfamily II	L	Contig13	Neut0104	COG1061	37	0.006
DNA or RNA helicase of superfamily II	L	Contig13	Neut0129	COG1061	63	9e-11
DNA or RNA helicase of superfamily II	L	Contig13	Neut0537	COG1061	53	1e-07
DNA or RNA helicase of superfamily II	L	Contig13	Neut0889	COG1061	67	4e-12
DNA or RNA helicase of superfamily II	L	Contig13	Neut1082	COG1061	59	8e-10
DNA or RNA helicase of superfamily II	L	Contig13	Neut1335	COG1061	66	1e-11
DNA or RNA helicase of superfamily II	L	Contig13	Neut1558	COG1061	69	1e-12
DNA or RNA helicase of superfamily II	L	Contig13	Neut1668	COG1061	67	4e-12
DNA or RNA helicase of superfamily II	L	Contig13	Neut1682	COG1061	43	9e-05
DNA or RNA helicase of superfamily II	L	Contig13	Neut2181	COG1061	58	3e-09
DNA or RNA helicase of superfamily II	L	Contig13	Neut2523	COG1061	44	3e-05

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	Contig13	Neut0384	COG0587	1237	0.0
DNA polymerase III alpha subunit	L	Contig13	Neut2039	COG0587	51	1e-07
DNA polymerase III alpha subunit (gram-positive type)	L	Contig13	Neut0384	COG2176	167	5e-42
DNA polymerase III alpha subunit (gram-positive type)	L	Contig13	Neut1887	COG2176	38	0.002
DNA polymerase III alpha subunit (gram-positive type)	L	Contig13	Neut2039	COG2176	46	4e-06
DNA polymerase III alpha subunit (gram-positive type)	L	Contig13	Neut2175	COG2176	118	5e-28
DNA polymerase III chi subunit	L	Contig13	Neut0600	COG2927	95	2e-21
DNA polymerase III delta subunit	L	Contig13	Neut1427	COG1466	178	5e-46
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig13	Neut1887	COG0847	51	3e-07
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig13	Neut2175	COG0847	171	3e-44
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig13	Neut2290	COG0847	39	2e-04
DNA polymerase III gamma/tau subunits	L	Contig13	Neut0284	COG2812	45	5e-06
DNA polymerase III gamma/tau subunits	L	Contig13	Neut0543	COG2812	98	8e-22
DNA polymerase III gamma/tau subunits	L	Contig13	Neut0590	COG2812	424	1.0e-119
DNA polymerase III gamma/tau subunits	L	Contig13	Neut2048	COG2812	36	0.010
DNA polymerase III gamma/tau subunits	L	Contig13	Neut2247	COG2812	37	0.001
DNA polymerase III gamma/tau subunits	L	Contig13	Neut2490	COG2812	99	5e-22
DNA polymerase sliding clamp subunit (PCNA homolog)	L	Contig13	Neut0002	COG0592	247	7e-67

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA recombination-dependent growth factor C	L	Contig13	Neut1228	COG2974	242	2e-65
DNA repair exonuclease	L	Contig13	Neut1267	COG0420	34	0.002
DNA repair exonuclease	L	Contig13	Neut2424	COG0420	156	3e-39
DNA repair protein	L	Contig11	Neut2601	COG2003	148	3e-37
DNA repair protein	L	Contig13	Neut0079	COG2003	146	6e-37
DNA repair protein	L	Contig13	Neut0782	COG2003	275	2e-75
DNA topoisomerase VI subunit B	L	Contig13	Neut1565	COG1389	38	0.002
DNA topoisomerase VI subunit B	L	Contig13	Neut1828	COG1389	38	0.003
DNA uptake protein and related DNA-binding protein	L	Contig13	Neut0664	COG1555	53	8e-08
DNA uptake protein and related DNA-binding protein	L	Contig13	Neut2073	COG1555	76	4e-16
Endonuclease I	L	Contig11	Neut2614	COG2356	246	2e-66
Endonuclease I	L	Contig12	Neut2534	COG2356	147	6e-37
Endonuclease I	L	Contig12	Neut2586	COG2356	58	9e-11
ERCC4-like helicase	L	Contig12	Neut2561	COG1111	40	0.001
ERCC4-like helicase	L	Contig13	Neut0129	COG1111	46	2e-05
ERCC4-like helicase	L	Contig13	Neut0889	COG1111	59	8e-10
ERCC4-like helicase	L	Contig13	Neut1082	COG1111	58	2e-09
ERCC4-like helicase	L	Contig13	Neut1558	COG1111	40	4e-04
ERCC4-like helicase	L	Contig13	Neut1668	COG1111	62	1e-10
ERCC4-like helicase	L	Contig13	Neut2523	COG1111	37	0.003
ERCC4-type nuclease	L	Contig13	Neut0782	COG1948	39	4e-04
ERCC4-type nuclease	L	Contig13	Neut1412	COG1948	51	2e-07
Excinuclease ATPase subunit	L	Contig13	Neut0063	COG0178	34	0.009
Excinuclease ATPase subunit	L	Contig13	Neut0236	COG0178	46	4e-06
Excinuclease ATPase subunit	L	Contig13	Neut0504	COG0178	51	2e-07
Excinuclease ATPase subunit	L	Contig13	Neut0628	COG0178	44	8e-06
Excinuclease ATPase subunit	L	Contig13	Neut0767	COG0178	36	0.007
Excinuclease ATPase subunit	L	Contig13	Neut0851	COG0178	60	2e-10
Excinuclease ATPase subunit	L	Contig13	Neut0856	COG0178	38	7e-04
Excinuclease ATPase subunit	L	Contig13	Neut0890	COG0178	47	3e-06
Excinuclease ATPase subunit	L	Contig13	Neut0915	COG0178	44	2e-05
Excinuclease ATPase subunit	L	Contig13	Neut0974	COG0178	44	9e-06
Excinuclease ATPase subunit	L	Contig13	Neut1009	COG0178	36	0.008
Excinuclease ATPase subunit	L	Contig13	Neut1024	COG0178	55	9e-09
Excinuclease ATPase subunit	L	Contig13	Neut1342	COG0178	42	2e-05
Excinuclease ATPase subunit	L	Contig13	Neut1397	COG0178	49	1e-06
Excinuclease ATPase subunit	L	Contig13	Neut1516	COG0178	37	9e-04
Excinuclease ATPase subunit	L	Contig13	Neut1528	COG0178	42	3e-05
Excinuclease ATPase subunit	L	Contig13	Neut1643	COG0178	44	7e-06
Excinuclease ATPase subunit	L	Contig13	Neut1653	COG0178	40	5e-04
Excinuclease ATPase subunit	L	Contig13	Neut1661	COG0178	56	1e-08
Excinuclease ATPase subunit	L	Contig13	Neut1704	COG0178	43	2e-05
Excinuclease ATPase subunit	L	Contig13	Neut1764	COG0178	56	1e-08
Excinuclease ATPase subunit	L	Contig13	Neut1936	COG0178	43	3e-05
Excinuclease ATPase subunit	L	Contig13	Neut2011	COG0178	47	2e-06
Excinuclease ATPase subunit	L	Contig13	Neut2053	COG0178	48	7e-07
Excinuclease ATPase subunit	L	Contig13	Neut2235	COG0178	56	2e-09
Excinuclease ATPase subunit	L	Contig13	Neut2302	COG0178	54	1e-08
Excinuclease ATPase subunit	L	Contig13	Neut2426	COG0178	36	0.005
Excinuclease ATPase subunit	L	Contig13	Neut2441	COG0178	44	3e-05
Excinuclease ATPase subunit	L	Contig13	Neut2459	COG0178	1542	0.0
Excinuclease ATPase subunit	L	Contig13	Neut2462	COG0178	54	2e-08
Excinuclease ATPase subunit	L	Contig13	Neut2491	COG0178	48	6e-07
Excinuclease ATPase subunit	L	Contig13	Neut2509	COG0178	36	0.002
Exonuclease I	L	Contig13	Neut1887	COG2925	551	1.0e-158
Exonuclease I	L	Contig13	Neut2290	COG2925	35	0.003
Exonuclease III	L	Contig13	Neut0211	COG0708	297	5e-82
Exonuclease III	L	Contig13	Neut0691	COG0708	279	1e-76
Exonuclease III	L	Contig13	Neut2298	COG0708	41	9e-05
Exonuclease V gamma subunit	L	Contig13	Neut1355	COG1330	789	0.0
Exonuclease VII large subunit	L	Contig13	Neut1510	COG1570	454	1.0e-129
Exonuclease VII small subunit	L	Contig13	Neut1499	COG1722	48	1e-07
Factor for inversion stimulation Fis transcriptional activator	L	Contig13	Neut1209	COG2901	85	1e-18
Formamidopyrimidine-DNA glycosylase	L	Contig13	Neut2512	COG0266	337	5e-94
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut0129	COG0556	64	5e-11
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut0889	COG0556	52	9e-08
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut1082	COG0556	1070	0.0
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut1412	COG0556	37	0.005
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut1558	COG0556	37	0.005
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut1668	COG0556	39	0.001
Helicase subunit of the DNA excision repair complex	L	Contig13	Neut1682	COG0556	45	2e-05
Holliday junction resolvasome DNA-binding subunit	L	Contig13	Neut0283	COG0632	188	2e-49
Holliday junction resolvasome endonuclease subunit	L	Contig13	Neut0282	COG0817	201	2e-53
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0001	COG2255	38	0.001
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0201	COG2255	41	3e-04
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0202	COG2255	42	1e-04
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0284	COG2255	523	1.0e-150
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0590	COG2255	64	4e-11
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0970	COG2255	43	1e-04
Holliday junction resolvasome helicase subunit	L	Contig13	Neut0998	COG2255	41	2e-04
Holliday junction resolvasome helicase subunit	L	Contig13	Neut1384	COG2255	46	6e-06
Holliday junction resolvasome helicase subunit	L	Contig13	Neut2048	COG2255	42	2e-04
Holliday junction resolvasome helicase subunit	L	Contig13	Neut2490	COG2255	71	1e-13
HrpA-like helicase	L	Contig13	Neut0889	COG1643	45	1e-05
HrpA-like helicase	L	Contig13	Neut1336	COG1643	666	0.0
HrpA-like helicase	L	Contig13	Neut1558	COG1643	51	3e-07
HrpA-like helicase	L	Contig13	Neut1668	COG1643	39	0.001
Integrase	L	Contig13	Neut0006	COG0582	46	9e-06
Integrase	L	Contig13	Neut0680	COG0582	57	3e-09
Integrase	L	Contig13	Neut1125	COG0582	58	1e-09
Integrase	L	Contig13	Neut1366	COG0582	39	4e-04
Integrase	L	Contig13	Neut1567	COG0582	57	2e-09
Integrase	L	Contig13	Neut1708	COG0582	51	1e-07
Integrase	L	Contig13	Neut1755	COG0582	58	1e-09
Integrase	L	Contig13	Neut2252	COG0582	57	3e-09
Integrase	L	Contig13	Neut2505	COG0582	58	1e-09
Methylated DNA-protein cysteine methyltransferase	L	Contig13	Neut1220	COG0350	168	2e-43
Methylated DNA-protein cysteine methyltransferase	L	Contig13	Neut1346	COG0350	141	5e-35
Mg-dependent DNase	L	Contig13	Neut1285	COG0084	300	7e-83
Micrococcal nuclease (thermonuclease) homologs	L	Contig13	Neut0850	COG1525	83	2e-17
Micrococcal nuclease (thermonuclease) homologs	L	Contig13	Neut1491	COG1525	97	7e-22
Mismatch repair ATPase (MutS family)	L	Contig13	Neut0793	COG1193	53	1e-08
Mismatch repair ATPase (MutS family)	L	Contig13	Neut1339	COG1193	106	3e-24
Mismatch repair ATPase (MutS family)	L	Contig13	Neut1339	COG0249	163	4e-41
Mismatch repair ATPase (MutS family)	L	Contig13	Neut2022	COG1193	123	6e-29
Mismatch repair ATPase (MutS family)	L	Contig13	Neut2022	COG0249	904	0.0
N6-adenine-specific methylase	L	Contig13	Neut0593	COG0742	38	0.001
N6-adenine-specific methylase	L	Contig13	Neut0828	COG0742	45	7e-06
N6-adenine-specific methylase	L	Contig13	Neut1898	COG0742	46	4e-06
N6-adenine-specific methylase	L	Contig13	Neut2342	COG0742	156	8e-40
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig13	Neut0259	COG2816	41	4e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig13	Neut0615	COG2816	42	2e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig13	Neut0653	COG2816	39	6e-04
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig13	Neut1448	COG2816	70	1e-13
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut0259	COG0494	46	1e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut0615	COG0494	52	2e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut0653	COG0494	60	3e-10
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut1248	COG0494	52	4e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut1448	COG0494	44	8e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig13	Neut2370	COG0494	40	1e-04
Nuclease subunit of the excinuclease complex	L	Contig13	Neut1082	COG0322	40	5e-04
Nuclease subunit of the excinuclease complex	L	Contig13	Neut1412	COG0322	626	1.0e-180
Nucleosome binding factor SPN SPT16 subunit	L	Contig13	Neut0307	COG5406	54	9e-09
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig11	Neut2622	COG0389	176	3e-45
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig12	Neut2575	COG0389	185	5e-48
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig13	Neut1620	COG0389	264	9e-72
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig13	Neut1739	COG0389	38	2e-04
Phage terminase small subunit	L	Contig13	Neut1473	COG3747	54	4e-09
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig13	Neut0519	COG1241	35	0.005
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig13	Neut0747	COG1241	38	0.002
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig13	Neut1754	COG1241	40	4e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig13	Neut2377	COG1241	57	3e-09
Predicted ATP-dependent endonuclease of the OLD family	L	Contig13	Neut0767	COG3593	38	0.003
Predicted ATP-dependent endonuclease of the OLD family	L	Contig13	Neut1342	COG3593	36	0.003
Predicted ATP-dependent endonuclease of the OLD family	L	Contig13	Neut1965	COG3593	43	5e-05
Predicted ATP-dependent endonuclease of the OLD family	L	Contig13	Neut2122	COG3593	37	0.009
Predicted DNA modification methylase	L	Contig13	Neut0065	COG1041	43	3e-05
Predicted DNA modification methylase	L	Contig13	Neut0541	COG1041	39	0.001
Predicted DNA modification methylase	L	Contig13	Neut0682	COG1041	37	0.002
Predicted DNA modification methylase	L	Contig13	Neut1059	COG1041	40	3e-04
Predicted DNA modification methylase	L	Contig13	Neut1512	COG1041	35	0.010
Predicted DNA modification methylase	L	Contig13	Neut1898	COG1041	36	0.003
Predicted DNA modification methylase	L	Contig13	Neut2280	COG1041	36	0.006
Predicted EndoIII-related endonuclease	L	Contig13	Neut0644	COG0177	294	5e-81
Predicted EndoIII-related endonuclease	L	Contig13	Neut1221	COG0177	41	3e-04
Predicted EndoIII-related endonuclease	L	Contig13	Neut2309	COG0177	109	4e-25
Predicted endonuclease containing a URI domain	L	Contig13	Neut1823	COG2827	100	2e-23
Predicted endonuclease distantly related to Holliday junction resolvase	L	Contig13	Neut1662	COG0792	135	8e-34
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	Contig13	Neut0449	COG0816	129	6e-32
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig13	Neut1220	COG3695	72	2e-14
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig13	Neut1346	COG3695	69	4e-13
Predicted N6-adenine-specific DNA methylase	L	Contig13	Neut0828	COG0116	41	1e-04
Predicted N6-adenine-specific DNA methylase	L	Contig13	Neut1512	COG0116	355	2e-99
Predicted NTP pyrophosphohydrolase	L	Contig13	Neut0653	COG4119	35	0.008
Predicted NTP pyrophosphohydrolase	L	Contig13	Neut1248	COG4119	36	0.002
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig13	Neut0394	COG0758	318	5e-88
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig13	Neut0777	COG0758	36	0.003
Primosomal replication protein N	L	Contig13	Neut2381	COG2965	58	1e-10
Primosomal replication protein N	L	Contig13	Neut2461	COG2965	37	7e-04
Rad3-related DNA helicase	L	Contig13	Neut0889	COG1199	38	0.001
Rad3-related DNA helicase	L	Contig13	Neut1215	COG1199	453	1.0e-128
Rad3-related DNA helicase	L	Contig13	Neut2523	COG1199	40	5e-04
RecA-family ATPase	L	Contig13	Neut0678	COG3598	68	8e-13
RecA-family ATPase	L	Contig13	Neut1754	COG3598	48	1e-06
RecA-family ATPase	L	Contig13	Neut2254	COG3598	68	8e-13
RecA/RadA recombinase	L	Contig11	Neut2592	COG0468	39	3e-04
RecA/RadA recombinase	L	Contig12	Neut2584	COG0468	38	4e-04
RecA/RadA recombinase	L	Contig13	Neut0789	COG0468	316	1e-87
RecA/RadA recombinase	L	Contig13	Neut1754	COG0468	55	1e-08
RecB family exonuclease	L	Contig13	Neut1014	COG1468	96	2e-21
RecB family exonuclease	L	Contig13	Neut1014	COG2887	37	0.001
RecG-like helicase	L	Contig13	Neut0129	COG1200	364	1.0e-101
RecG-like helicase	L	Contig13	Neut0889	COG1200	58	1e-09
RecG-like helicase	L	Contig13	Neut1082	COG1200	45	2e-05
RecG-like helicase	L	Contig13	Neut1558	COG1200	791	0.0
RecG-like helicase	L	Contig13	Neut1668	COG1200	45	1e-05
RecG-like helicase	L	Contig13	Neut1682	COG1200	51	3e-07
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig13	Neut0400	COG1107	37	0.003
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig13	Neut0413	COG1107	43	5e-05
Recombinational DNA repair ATPase (RecF pathway)	L	Contig13	Neut0767	COG1195	47	4e-06
Recombinational DNA repair ATPase (RecF pathway)	L	Contig13	Neut1936	COG1195	36	0.002
Recombinational DNA repair ATPase (RecF pathway)	L	Contig13	Neut1965	COG1195	35	0.010
Reverse gyrase	L	Contig13	Neut0116	COG1110	111	1e-25
Reverse gyrase	L	Contig13	Neut0129	COG1110	50	1e-06
Reverse gyrase	L	Contig13	Neut0396	COG1110	105	1e-23
Reverse gyrase	L	Contig13	Neut0889	COG1110	43	4e-05
Reverse gyrase	L	Contig13	Neut1082	COG1110	38	0.002
Single-stranded DNA-specific exonuclease	L	Contig13	Neut0131	COG0608	375	1.0e-105
Site-specific DNA methylase	L	Contig13	Neut0115	COG0270	135	6e-33
Site-specific recombinase DNA invertase Pin homologs	L	Contig11	Neut2608	COG1961	120	7e-29
Site-specific recombinase DNA invertase Pin homologs	L	Contig11	Neut2612	COG1961	114	6e-27
Site-specific recombinase DNA invertase Pin homologs	L	Contig12	Neut2538	COG1961	116	2e-27
Site-specific recombinase DNA invertase Pin homologs	L	Contig12	Neut2542	COG1961	120	7e-29
Site-specific recombinase DNA invertase Pin homologs	L	Contig12	Neut2563	COG1961	108	2e-25
Site-specific recombinase DNA invertase Pin homologs	L	Contig13	Neut0666	COG1961	71	8e-14
Site-specific recombinase DNA invertase Pin homologs	L	Contig13	Neut1313	COG1961	108	2e-25
Site-specific recombinase DNA invertase Pin homologs	L	Contig13	Neut2265	COG1961	71	8e-14
Site-specific recombinase XerC	L	Contig13	Neut0680	COG4973	43	4e-05
Site-specific recombinase XerC	L	Contig13	Neut1125	COG4973	56	4e-09
Site-specific recombinase XerC	L	Contig13	Neut1366	COG4973	98	8e-22
Site-specific recombinase XerC	L	Contig13	Neut1498	COG4973	37	0.002
Site-specific recombinase XerC	L	Contig13	Neut1567	COG4973	302	3e-83
Site-specific recombinase XerC	L	Contig13	Neut1708	COG4973	222	2e-59
Site-specific recombinase XerC	L	Contig13	Neut1737	COG4973	44	2e-06
Site-specific recombinase XerC	L	Contig13	Neut1755	COG4973	56	4e-09
Site-specific recombinase XerC	L	Contig13	Neut2252	COG4973	43	4e-05
Site-specific recombinase XerD	L	Contig13	Neut0006	COG4974	45	1e-05
Site-specific recombinase XerD	L	Contig13	Neut0680	COG4974	55	1e-08
Site-specific recombinase XerD	L	Contig13	Neut1035	COG4974	37	0.004
Site-specific recombinase XerD	L	Contig13	Neut1125	COG4974	43	4e-05
Site-specific recombinase XerD	L	Contig13	Neut1366	COG4974	158	6e-40
Site-specific recombinase XerD	L	Contig13	Neut1498	COG4974	43	3e-05
Site-specific recombinase XerD	L	Contig13	Neut1567	COG4974	262	2e-71
Site-specific recombinase XerD	L	Contig13	Neut1708	COG4974	373	1.0e-104
Site-specific recombinase XerD	L	Contig13	Neut1737	COG4974	48	2e-07
Site-specific recombinase XerD	L	Contig13	Neut1738	COG4974	40	2e-04
Site-specific recombinase XerD	L	Contig13	Neut1755	COG4974	43	4e-05
Site-specific recombinase XerD	L	Contig13	Neut2252	COG4974	55	1e-08
Superfamily I DNA and RNA helicase	L	Contig11	Neut2605	COG0210	293	3e-80
Superfamily I DNA and RNA helicase	L	Contig12	Neut2545	COG0210	293	3e-80
Superfamily I DNA and RNA helicase	L	Contig13	Neut0773	COG0210	582	1.0e-167
Superfamily I DNA and RNA helicase	L	Contig13	Neut1356	COG0210	107	6e-24
Superfamily II DNA and RNA helicase	L	Contig13	Neut0129	COG0513	72	2e-13
Superfamily II DNA and RNA helicase	L	Contig13	Neut0889	COG0513	415	1.0e-117
Superfamily II DNA and RNA helicase	L	Contig13	Neut1082	COG0513	67	3e-12
Superfamily II DNA and RNA helicase	L	Contig13	Neut1215	COG0513	37	0.004
Superfamily II DNA and RNA helicase	L	Contig13	Neut1336	COG0513	41	5e-04
Superfamily II DNA and RNA helicase	L	Contig13	Neut1558	COG0513	72	1e-13
Superfamily II DNA and RNA helicase	L	Contig13	Neut1668	COG0513	408	1.0e-115
Superfamily II DNA and RNA helicase	L	Contig13	Neut2523	COG0513	98	2e-21
Superfamily II DNA helicase	L	Contig13	Neut0129	COG0514	54	5e-08
Superfamily II DNA helicase	L	Contig13	Neut0889	COG0514	111	1e-25
Superfamily II DNA helicase	L	Contig13	Neut1082	COG0514	45	1e-05
Superfamily II DNA helicase	L	Contig13	Neut1558	COG0514	52	2e-07
Superfamily II DNA helicase	L	Contig13	Neut1668	COG0514	100	2e-22
Superfamily II DNA helicase	L	Contig13	Neut2523	COG0514	599	1.0e-172
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig13	Neut0129	COG4098	73	8e-14
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig13	Neut0889	COG4098	36	0.007
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig13	Neut1082	COG4098	55	2e-08
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig13	Neut1558	COG4098	56	1e-08
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig13	Neut1682	COG4098	65	2e-11
Superfamily II DNA/RNA helicase SNF2 family	L	Contig13	Neut0104	COG0553	62	1e-10
Superfamily II DNA/RNA helicase SNF2 family	L	Contig13	Neut0889	COG0553	43	4e-05
Superfamily II DNA/RNA helicase SNF2 family	L	Contig13	Neut1668	COG0553	39	9e-04
Superfamily II DNA/RNA helicase SNF2 family	L	Contig13	Neut2181	COG0553	326	4e-90
Superfamily II RNA helicase	L	Contig13	Neut0129	COG4581	46	2e-05
Superfamily II RNA helicase	L	Contig13	Neut0889	COG4581	40	3e-04
Transcription-repair coupling factor (superfamily II helicase)	L	Contig13	Neut0129	COG1197	1311	0.0
Transcription-repair coupling factor (superfamily II helicase)	L	Contig13	Neut0889	COG1197	39	5e-04
Transcription-repair coupling factor (superfamily II helicase)	L	Contig13	Neut1082	COG1197	131	1e-31
Transcription-repair coupling factor (superfamily II helicase)	L	Contig13	Neut1558	COG1197	351	1e-97
Transcription-repair coupling factor (superfamily II helicase)	L	Contig13	Neut1682	COG1197	69	1e-12
Transposase and inactivated derivatives	L	Contig13	Neut0013	COG2801	75	4e-15
Transposase and inactivated derivatives	L	Contig13	Neut0016	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut0170	COG3328	49	9e-08
Transposase and inactivated derivatives	L	Contig13	Neut0174	COG3293	40	4e-05
Transposase and inactivated derivatives	L	Contig13	Neut0216	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut0303	COG2801	95	7e-21
Transposase and inactivated derivatives	L	Contig13	Neut0304	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut0355	COG3415	46	1e-06
Transposase and inactivated derivatives	L	Contig13	Neut0357	COG3328	181	8e-47
Transposase and inactivated derivatives	L	Contig13	Neut0358	COG2963	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut0360	COG2963	55	8e-10
Transposase and inactivated derivatives	L	Contig13	Neut0361	COG2801	84	8e-18
Transposase and inactivated derivatives	L	Contig13	Neut0376	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut0485	COG3316	35	0.007
Transposase and inactivated derivatives	L	Contig13	Neut0485	COG2801	37	0.001
Transposase and inactivated derivatives	L	Contig13	Neut0625	COG3316	35	0.005
Transposase and inactivated derivatives	L	Contig13	Neut0625	COG2801	37	0.001
Transposase and inactivated derivatives	L	Contig13	Neut0631	COG2801	35	0.007
Transposase and inactivated derivatives	L	Contig13	Neut0752	COG3415	46	1e-06
Transposase and inactivated derivatives	L	Contig13	Neut0753	COG3335	59	2e-10
Transposase and inactivated derivatives	L	Contig13	Neut0797	COG3293	37	5e-04
Transposase and inactivated derivatives	L	Contig13	Neut0883	COG3293	47	5e-07
Transposase and inactivated derivatives	L	Contig13	Neut0884	COG3293	44	4e-06
Transposase and inactivated derivatives	L	Contig13	Neut0886	COG2963	55	8e-10
Transposase and inactivated derivatives	L	Contig13	Neut0887	COG2801	94	8e-21
Transposase and inactivated derivatives	L	Contig13	Neut0939	COG3293	62	1e-11
Transposase and inactivated derivatives	L	Contig13	Neut0978	COG2801	37	0.001
Transposase and inactivated derivatives	L	Contig13	Neut0983	COG2801	95	7e-21
Transposase and inactivated derivatives	L	Contig13	Neut0984	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut0985	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1056	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1066	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut1067	COG2801	95	7e-21
Transposase and inactivated derivatives	L	Contig13	Neut1068	COG2801	50	5e-08
Transposase and inactivated derivatives	L	Contig13	Neut1069	COG2801	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1074	COG2801	70	1e-13
Transposase and inactivated derivatives	L	Contig13	Neut1116	COG3335	53	9e-09
Transposase and inactivated derivatives	L	Contig13	Neut1212	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1212	COG2801	38	0.001
Transposase and inactivated derivatives	L	Contig13	Neut1233	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1255	COG3415	44	3e-06
Transposase and inactivated derivatives	L	Contig13	Neut1256	COG3335	58	3e-10
Transposase and inactivated derivatives	L	Contig13	Neut1257	COG3335	53	4e-09
Transposase and inactivated derivatives	L	Contig13	Neut1278	COG2801	37	0.001
Transposase and inactivated derivatives	L	Contig13	Neut1318	COG3328	183	2e-47
Transposase and inactivated derivatives	L	Contig13	Neut1321	COG2801	95	7e-21
Transposase and inactivated derivatives	L	Contig13	Neut1322	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut1353	COG3293	59	2e-10
Transposase and inactivated derivatives	L	Contig13	Neut1371	COG2801	80	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut1375	COG2801	80	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut1421	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut1522	COG3293	36	7e-04
Transposase and inactivated derivatives	L	Contig13	Neut1524	COG3316	35	0.009
Transposase and inactivated derivatives	L	Contig13	Neut1524	COG2801	36	0.003
Transposase and inactivated derivatives	L	Contig13	Neut1624	COG2801	80	2e-16
Transposase and inactivated derivatives	L	Contig13	Neut1674	COG3335	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut1675	COG3415	48	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1693	COG2963	40	3e-05
Transposase and inactivated derivatives	L	Contig13	Neut1716	COG3328	32	0.007
Transposase and inactivated derivatives	L	Contig13	Neut1717	COG3328	103	2e-23
Transposase and inactivated derivatives	L	Contig13	Neut1719	COG2963	39	6e-05
Transposase and inactivated derivatives	L	Contig13	Neut1720	COG2801	69	2e-13
Transposase and inactivated derivatives	L	Contig13	Neut1746	COG2801	37	0.001
Transposase and inactivated derivatives	L	Contig13	Neut1756	COG3335	55	2e-09
Transposase and inactivated derivatives	L	Contig13	Neut1757	COG3415	48	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1813	COG2963	55	8e-10
Transposase and inactivated derivatives	L	Contig13	Neut1814	COG2801	98	8e-22
Transposase and inactivated derivatives	L	Contig13	Neut1818	COG3316	35	0.004
Transposase and inactivated derivatives	L	Contig13	Neut1818	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut1819	COG2801	81	7e-17
Transposase and inactivated derivatives	L	Contig13	Neut1825	COG2801	79	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut1844	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1844	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut1846	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1848	COG2801	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1860	COG2801	34	0.003
Transposase and inactivated derivatives	L	Contig13	Neut1862	COG3316	35	0.005
Transposase and inactivated derivatives	L	Contig13	Neut1862	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut1888	COG2801	79	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut1929	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut1931	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1931	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut1961	COG3316	36	0.004
Transposase and inactivated derivatives	L	Contig13	Neut1961	COG2801	38	0.001
Transposase and inactivated derivatives	L	Contig13	Neut1980	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut1992	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut1992	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut1994	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2001	COG2801	80	2e-16
Transposase and inactivated derivatives	L	Contig13	Neut2186	COG3316	35	0.008
Transposase and inactivated derivatives	L	Contig13	Neut2186	COG2801	36	0.006
Transposase and inactivated derivatives	L	Contig13	Neut2189	COG2801	46	7e-07
Transposase and inactivated derivatives	L	Contig13	Neut2190	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut2192	COG2801	99	4e-22
Transposase and inactivated derivatives	L	Contig13	Neut2194	COG2963	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2195	COG2801	95	7e-21
Transposase and inactivated derivatives	L	Contig13	Neut2197	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut2197	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut2198	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2206	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2210	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2267	COG3415	48	3e-07
Transposase and inactivated derivatives	L	Contig13	Neut2268	COG3316	35	0.009
Transposase and inactivated derivatives	L	Contig13	Neut2268	COG2801	57	2e-09
Transposase and inactivated derivatives	L	Contig13	Neut2270	COG3415	43	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2271	COG3335	53	1e-08
Transposase and inactivated derivatives	L	Contig13	Neut2361	COG3328	150	1e-37
Transposase and inactivated derivatives	L	Contig13	Neut2362	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2405	COG3328	181	7e-47
Transposase and inactivated derivatives	L	Contig13	Neut2407	COG3293	42	1e-05
Transposase and inactivated derivatives	L	Contig13	Neut2410	COG3316	35	0.006
Transposase and inactivated derivatives	L	Contig13	Neut2410	COG2801	37	0.002
Transposase and inactivated derivatives	L	Contig13	Neut2414	COG3415	44	4e-06
Transposase and inactivated derivatives	L	Contig13	Neut2418	COG3415	44	4e-06
Transposase and inactivated derivatives	L	Contig13	Neut2422	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2449	COG3415	48	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2450	COG3335	59	2e-10
Transposase and inactivated derivatives	L	Contig13	Neut2452	COG2801	79	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut2496	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2497	COG3316	35	0.009
Transposase and inactivated derivatives	L	Contig13	Neut2497	COG2801	37	0.003
Transposase and inactivated derivatives	L	Contig13	Neut2499	COG3293	47	4e-07
Transposase and inactivated derivatives	L	Contig13	Neut2501	COG2801	79	3e-16
Transposase and inactivated derivatives	L	Contig13	Neut2502	COG3293	42	1e-05
Transposase and inactivated derivatives IS5 family	L	Contig13	Neut0314	COG3039	32	0.010
Transposase and inactivated derivatives TnpA family	L	Contig12	Neut2533	COG4644	311	2e-85
Transposase and inactivated derivatives TnpA family	L	Contig12	Neut2562	COG4644	284	2e-77
Transposase and inactivated derivatives TnpA family	L	Contig13	Neut0046	COG4644	36	6e-04
Transposase and inactivated derivatives TnpA family	L	Contig13	Neut1314	COG4644	284	2e-77
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut1012	COG1343	60	3e-11
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut1013	COG1518	230	9e-62
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut1015	COG3649	140	1e-34
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut2217	COG1421	38	2e-04
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut2228	COG1343	41	1e-05
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut2229	COG1518	172	3e-44
Uncharacterized protein predicted to be involved in DNA repair	L	Contig13	Neut2230	COG1343	42	9e-06
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2218	COG1337	159	2e-40
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2218	COG1604	46	2e-06
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2218	COG1336	56	2e-09
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2218	COG1332	40	2e-04
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2219	COG1567	55	9e-09
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2220	COG1337	38	0.002
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig13	Neut2220	COG1332	73	3e-14
Uncharacterized protein related to Endonuclease III	L	Contig13	Neut0644	COG2231	83	2e-17
Uncharacterized protein related to Endonuclease III	L	Contig13	Neut2309	COG2231	53	2e-08
Uracil-DNA glycosylase	L	Contig13	Neut1296	COG1573	170	6e-44
Uracil-DNA glycosylase	L	Contig13	Neut1410	COG1573	104	5e-24
Uracil-DNA glycosylase	L	Contig13	Neut1414	COG1573	48	2e-07
Zn-finger domain associated with topoisomerase type I	L	Contig13	Neut0116	COG0551	42	1e-04

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