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Transcription

COG Name Group Contig Gene COG ID Score Evalue
AraC-type DNA-binding domain-containing protein K Contig13 Neut1221 COG2207 61 2e-10
AraC-type DNA-binding domain-containing protein K Contig13 Neut1346 COG2207 86 2e-18

BASAL TRANSCRIPTION FACTORS

COG Name Group Contig Gene COG ID Score Evalue
Predicted transcription factor homolog of eukaryotic MBF1 K Contig13 Neut0009 COG1813 40 5e-05
Transcription antiterminator K Contig13 Neut1800 COG0250 197 4e-52
Transcription elongation factor K Contig13 Neut0456 COG0782 162 1e-41
Transcription elongation factor K Contig13 Neut1560 COG0782 148 3e-37
Transcription elongation factor K Contig13 Neut1647 COG0195 180 2e-46
Transcription elongation factor K Contig13 Neut2081 COG0782 87 5e-19
Transcription termination factor K Contig13 Neut0275 COG1158 38 0.002
Transcription termination factor K Contig13 Neut0277 COG1158 53 3e-08
Transcription termination factor K Contig13 Neut0390 COG0781 36 0.004
Transcription termination factor K Contig13 Neut0742 COG1158 82 8e-17
Transcription termination factor K Contig13 Neut2013 COG1158 38 0.002
Transcription termination factor K Contig13 Neut2020 COG1158 54 2e-08
Transcription termination factor K Contig13 Neut2479 COG1158 696 0.0
Transcription termination factor K Contig13 Neut2518 COG0781 130 4e-32
COG Name Group Contig Gene COG ID Score Evalue
Biotin operon repressor K Contig13 Neut0232 COG1654 49 5e-07
Cold shock protein K Contig13 Neut0302 COG1278 107 1e-25
Cold shock protein K Contig13 Neut1619 COG1278 36 0.010
Cold shock protein K Contig13 Neut2046 COG1278 110 2e-26
DNA-binding HTH domain-containing protein K Contig13 Neut1839 COG2771 49 2e-07
DNA-binding winged-HTH domains K Contig13 Neut0018 COG3710 55 4e-09
DNA-binding winged-HTH domains K Contig13 Neut0040 COG3710 55 5e-09
DNA-binding winged-HTH domains K Contig13 Neut1362 COG3710 57 1e-09
DNA-binding winged-HTH domains K Contig13 Neut1564 COG3710 52 3e-08
DNA-binding winged-HTH domains K Contig13 Neut2082 COG3710 61 6e-11

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit K Contig13 Neut0583 COG0202 326 2e-90
DNA-directed RNA polymerase beta subunit/140 kD subunit K Contig13 Neut1795 COG0085 731 0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit K Contig13 Neut1794 COG0086 869 0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig13 Neut0300 COG0568 333 2e-92
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig13 Neut1031 COG0568 223 1e-59
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig13 Neut2447 COG0568 90 1e-19
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut0300 COG1191 108 2e-24
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut1031 COG1191 100 1e-22
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut1395 COG1191 41 4e-05
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut1785 COG1191 36 0.003
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut2090 COG1191 40 9e-05
DNA-directed RNA polymerase specialized sigma subunit K Contig13 Neut2447 COG1191 197 5e-52
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig13 Neut1395 COG1595 86 1e-18
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig13 Neut1785 COG1595 133 9e-33
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig13 Neut2090 COG1595 92 2e-20
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig13 Neut2447 COG1595 40 2e-04
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog K Contig11 Neut2616 COG1508 35 0.002
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog K Contig13 Neut2303 COG1508 393 1.0e-110
DNA-directed RNA polymerase subunit E' K Contig13 Neut0400 COG1095 41 2e-04
DNA-directed RNA polymerase subunit E' K Contig13 Neut1619 COG1095 56 1e-08
DNA-directed RNA polymerase subunit E' K Contig13 Neut2157 COG1095 41 4e-04
DNA-directed RNA polymerase subunit K/omega K Contig13 Neut0613 COG1758 54 2e-09
COG Name Group Contig Gene COG ID Score Evalue
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut0284 COG1224 46 3e-06
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut0590 COG1224 45 1e-05
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut0998 COG1224 50 4e-07
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut1384 COG1224 54 3e-08
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut2377 COG1224 41 2e-04
DNA helicase TIP49 TBP-interacting protein K Contig13 Neut2490 COG1224 41 2e-04
DNA or RNA helicase of superfamily II K Contig11 Neut2603 COG1061 38 0.003
DNA or RNA helicase of superfamily II K Contig12 Neut2547 COG1061 38 0.003
DNA or RNA helicase of superfamily II K Contig12 Neut2561 COG1061 102 2e-22
DNA or RNA helicase of superfamily II K Contig13 Neut0104 COG1061 37 0.006
DNA or RNA helicase of superfamily II K Contig13 Neut0129 COG1061 63 9e-11
DNA or RNA helicase of superfamily II K Contig13 Neut0537 COG1061 53 1e-07
DNA or RNA helicase of superfamily II K Contig13 Neut0889 COG1061 67 4e-12
DNA or RNA helicase of superfamily II K Contig13 Neut1082 COG1061 59 8e-10
DNA or RNA helicase of superfamily II K Contig13 Neut1335 COG1061 66 1e-11
DNA or RNA helicase of superfamily II K Contig13 Neut1558 COG1061 69 1e-12
DNA or RNA helicase of superfamily II K Contig13 Neut1668 COG1061 67 4e-12
DNA or RNA helicase of superfamily II K Contig13 Neut1682 COG1061 43 9e-05
DNA or RNA helicase of superfamily II K Contig13 Neut2181 COG1061 58 3e-09
DNA or RNA helicase of superfamily II K Contig13 Neut2523 COG1061 44 3e-05
dsRNA-specific ribonuclease K Contig13 Neut1778 COG0571 226 1e-60
Exoribonuclease II K Contig13 Neut0498 COG4776 110 3e-25
Exoribonuclease II K Contig13 Neut1619 COG4776 276 6e-75
Exoribonuclease R K Contig13 Neut0400 COG0557 42 2e-04
Exoribonuclease R K Contig13 Neut0498 COG0557 155 6e-39
Exoribonuclease R K Contig13 Neut1619 COG0557 701 0.0
Exoribonuclease R K Contig13 Neut2157 COG0557 38 0.003
Exoribonuclease R K Contig13 Neut2479 COG0557 36 0.006
Factor for inversion stimulation Fis transcriptional activator K Contig13 Neut1209 COG2901 85 1e-18
Guanosine polyphosphate pyrophosphohydrolase/synthetase K Contig13 Neut0865 COG0317 43 6e-05
Guanosine polyphosphate pyrophosphohydrolase/synthetase K Contig13 Neut1601 COG0317 814 0.0
Histone acetyltransferase K Contig13 Neut1789 COG1243 36 0.007
Negative regulator of flagellin synthesis (anti-sigma28 factor) K Contig13 Neut2439 COG2747 38 1e-04
Nucleosome binding factor SPN SPT16 subunit K Contig13 Neut0307 COG5406 54 9e-09
Predicted nucleotide-binding protein containing TIR -like domain K Contig13 Neut0096 COG4271 53 2e-08
Predicted RNA polymerase sigma factor containing a TPR repeat domain K Contig13 Neut1785 COG4941 46 2e-06
Predicted RNA polymerase sigma factor containing a TPR repeat domain K Contig13 Neut2166 COG4941 37 0.001
Predicted transcriptional regulator BolA superfamily protein K Contig13 Neut0858 COG5007 83 3e-18
Predicted transcriptional regulator BolA superfamily protein K Contig13 Neut1391 COG5007 60 3e-11
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut0285 COG4109 34 0.005
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut0642 COG4109 38 0.002
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut0971 COG4109 40 7e-05
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut0994 COG4109 37 5e-04
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut0995 COG4109 39 1e-04
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut1526 COG4109 35 0.002
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut1995 COG4109 44 3e-05
Predicted transcriptional regulator protein containing CBS domains K Contig13 Neut2250 COG4109 49 1e-06
Predicted transcriptional regulator protein K Contig13 Neut0353 COG4189 40 3e-05
Predicted transcriptional regulator protein K Contig13 Neut0667 COG4189 42 8e-06
Predicted transcriptional regulator protein K Contig13 Neut0667 COG3888 33 0.003
Predicted transcriptional regulator protein K Contig13 Neut1057 COG4190 36 0.004
Predicted transcriptional regulator protein K Contig13 Neut1057 COG4742 42 4e-05
Predicted transcriptional regulator protein K Contig13 Neut2264 COG4189 42 8e-06
Predicted transcriptional regulator protein K Contig13 Neut2264 COG3888 33 0.003
Predicted transcriptional regulator protein K Contig13 Neut2527 COG4189 41 5e-05
Rad3-related DNA helicase K Contig13 Neut0889 COG1199 38 0.001
Rad3-related DNA helicase K Contig13 Neut1215 COG1199 453 1.0e-128
Rad3-related DNA helicase K Contig13 Neut2523 COG1199 40 5e-04
RecG-like helicase K Contig13 Neut0129 COG1200 364 1.0e-101
RecG-like helicase K Contig13 Neut0889 COG1200 58 1e-09
RecG-like helicase K Contig13 Neut1082 COG1200 45 2e-05
RecG-like helicase K Contig13 Neut1558 COG1200 791 0.0
RecG-like helicase K Contig13 Neut1668 COG1200 45 1e-05
RecG-like helicase K Contig13 Neut1682 COG1200 51 3e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0018 COG4567 52 5e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0040 COG4567 59 3e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0138 COG4567 69 8e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0219 COG4567 42 3e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0387 COG4567 62 9e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut0747 COG4567 67 2e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1019 COG4567 46 5e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1162 COG4567 53 2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1173 COG4567 38 0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1251 COG4567 216 7e-58
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1276 COG4567 45 3e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1362 COG4567 70 2e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1416 COG4567 65 1e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1564 COG4567 58 4e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut1839 COG4567 52 3e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut2082 COG4567 46 2e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig13 Neut2386 COG4567 52 1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0018 COG3437 92 4e-20
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0040 COG3437 100 8e-23
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0138 COG3437 88 1e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0219 COG3437 71 5e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0387 COG3437 75 8e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0420 COG3437 36 0.002
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0747 COG3437 92 9e-20
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut0796 COG3437 33 0.003
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1019 COG3437 70 4e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1130 COG3437 75 1e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1162 COG3437 78 4e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1173 COG3437 61 1e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1251 COG3437 58 4e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1276 COG3437 76 6e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1362 COG3437 82 3e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1416 COG3437 38 0.001
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1564 COG3437 81 9e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut1839 COG3437 59 2e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut2082 COG3437 103 1e-23
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut2201 COG3437 181 1e-46
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut2285 COG3437 36 0.006
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig13 Neut2386 COG3437 87 3e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0018 COG2197 75 3e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0040 COG2197 85 4e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0138 COG2197 74 2e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0219 COG2197 60 1e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0387 COG2197 77 4e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0420 COG2197 48 5e-07
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0747 COG2197 77 2e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut0796 COG2197 35 0.002
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1019 COG2197 63 4e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1084 COG2197 42 7e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1130 COG2197 70 4e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1162 COG2197 62 4e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1173 COG2197 78 1e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1251 COG2197 67 7e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1276 COG2197 79 1e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1362 COG2197 80 1e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1416 COG2197 68 1e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1564 COG2197 83 1e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1839 COG2197 184 6e-48
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut1840 COG2197 38 0.002
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut2082 COG2197 77 9e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut2285 COG2197 48 3e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig13 Neut2386 COG2197 74 4e-15
Response regulator of citrate/malate metabolism K Contig13 Neut0018 COG4565 71 5e-14
Response regulator of citrate/malate metabolism K Contig13 Neut0040 COG4565 71 6e-14
Response regulator of citrate/malate metabolism K Contig13 Neut0138 COG4565 52 7e-08
Response regulator of citrate/malate metabolism K Contig13 Neut0219 COG4565 57 7e-09
Response regulator of citrate/malate metabolism K Contig13 Neut0387 COG4565 79 4e-16
Response regulator of citrate/malate metabolism K Contig13 Neut0747 COG4565 67 3e-12
Response regulator of citrate/malate metabolism K Contig13 Neut0796 COG4565 34 0.001
Response regulator of citrate/malate metabolism K Contig13 Neut1019 COG4565 69 7e-13
Response regulator of citrate/malate metabolism K Contig13 Neut1130 COG4565 51 2e-08
Response regulator of citrate/malate metabolism K Contig13 Neut1162 COG4565 49 4e-06
Response regulator of citrate/malate metabolism K Contig13 Neut1173 COG4565 69 4e-13
Response regulator of citrate/malate metabolism K Contig13 Neut1251 COG4565 54 6e-09
Response regulator of citrate/malate metabolism K Contig13 Neut1276 COG4565 64 4e-12
Response regulator of citrate/malate metabolism K Contig13 Neut1362 COG4565 62 3e-11
Response regulator of citrate/malate metabolism K Contig13 Neut1416 COG4565 45 9e-06
Response regulator of citrate/malate metabolism K Contig13 Neut1564 COG4565 69 3e-13
Response regulator of citrate/malate metabolism K Contig13 Neut1839 COG4565 67 1e-12
Response regulator of citrate/malate metabolism K Contig13 Neut2082 COG4565 62 4e-11
Response regulator of citrate/malate metabolism K Contig13 Neut2101 COG4565 35 0.006
Response regulator of citrate/malate metabolism K Contig13 Neut2386 COG4565 58 2e-10
Response regulator of the LytR/AlgR family K Contig13 Neut0018 COG3279 54 7e-09
Response regulator of the LytR/AlgR family K Contig13 Neut0040 COG3279 54 9e-09
Response regulator of the LytR/AlgR family K Contig13 Neut0138 COG3279 57 3e-09
Response regulator of the LytR/AlgR family K Contig13 Neut0219 COG3279 42 2e-04
Response regulator of the LytR/AlgR family K Contig13 Neut0387 COG3279 56 6e-09
Response regulator of the LytR/AlgR family K Contig13 Neut0747 COG3279 57 3e-09
Response regulator of the LytR/AlgR family K Contig13 Neut1019 COG3279 57 3e-09
Response regulator of the LytR/AlgR family K Contig13 Neut1130 COG3279 49 1e-07
Response regulator of the LytR/AlgR family K Contig13 Neut1162 COG3279 48 4e-06
Response regulator of the LytR/AlgR family K Contig13 Neut1173 COG3279 63 2e-11
Response regulator of the LytR/AlgR family K Contig13 Neut1251 COG3279 44 8e-06
Response regulator of the LytR/AlgR family K Contig13 Neut1276 COG3279 47 4e-07
Response regulator of the LytR/AlgR family K Contig13 Neut1362 COG3279 58 4e-10
Response regulator of the LytR/AlgR family K Contig13 Neut1416 COG3279 49 8e-07
Response regulator of the LytR/AlgR family K Contig13 Neut1564 COG3279 58 4e-10
Response regulator of the LytR/AlgR family K Contig13 Neut1839 COG3279 70 9e-14
Response regulator of the LytR/AlgR family K Contig13 Neut2082 COG3279 44 9e-06
Response regulator of the LytR/AlgR family K Contig13 Neut2386 COG3279 53 4e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0018 COG0745 211 4e-56
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0040 COG0745 231 3e-62
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0138 COG0745 93 5e-20
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0219 COG0745 76 2e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0387 COG0745 97 2e-21
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0420 COG0745 52 3e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0747 COG0745 94 2e-20
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut0796 COG0745 46 5e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1019 COG0745 72 8e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1130 COG0745 92 2e-20
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1162 COG0745 81 6e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1173 COG0745 63 3e-11
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1251 COG0745 73 1e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1276 COG0745 86 1e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1362 COG0745 204 4e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1416 COG0745 54 2e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1564 COG0745 202 2e-53
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1839 COG0745 85 5e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut1840 COG0745 41 1e-04
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut2082 COG0745 214 3e-57
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut2285 COG0745 40 6e-04
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig13 Neut2386 COG0745 96 9e-22
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0138 COG4650 153 2e-38
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0387 COG4650 57 2e-09
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0519 COG4650 41 7e-05
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0747 COG4650 137 2e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0815 COG4650 43 3e-05
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut1416 COG4650 131 1e-31
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut1621 COG4650 135 7e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut2490 COG4650 35 0.007
SOS-response transcriptional repressors (RecA-mediated autopeptidase) K Contig11 Neut2624 COG1974 104 3e-24
SOS-response transcriptional repressors (RecA-mediated autopeptidase) K Contig12 Neut2574 COG1974 113 8e-27
Superfamily II DNA and RNA helicase K Contig13 Neut0129 COG0513 72 2e-13
Superfamily II DNA and RNA helicase K Contig13 Neut0889 COG0513 415 1.0e-117
Superfamily II DNA and RNA helicase K Contig13 Neut1082 COG0513 67 3e-12
Superfamily II DNA and RNA helicase K Contig13 Neut1215 COG0513 37 0.004
Superfamily II DNA and RNA helicase K Contig13 Neut1336 COG0513 41 5e-04
Superfamily II DNA and RNA helicase K Contig13 Neut1558 COG0513 72 1e-13
Superfamily II DNA and RNA helicase K Contig13 Neut1668 COG0513 408 1.0e-115
Superfamily II DNA and RNA helicase K Contig13 Neut2523 COG0513 98 2e-21
Superfamily II DNA/RNA helicase SNF2 family K Contig13 Neut0104 COG0553 62 1e-10
Superfamily II DNA/RNA helicase SNF2 family K Contig13 Neut0889 COG0553 43 4e-05
Superfamily II DNA/RNA helicase SNF2 family K Contig13 Neut1668 COG0553 39 9e-04
Superfamily II DNA/RNA helicase SNF2 family K Contig13 Neut2181 COG0553 326 4e-90
Transcriptional accessory protein K Contig13 Neut0400 COG2183 77 4e-15
Transcriptional accessory protein K Contig13 Neut0664 COG2183 905 0.0
Transcriptional accessory protein K Contig13 Neut0681 COG2183 58 1e-10
Transcriptional accessory protein K Contig13 Neut1619 COG2183 41 4e-04
Transcriptional accessory protein K Contig13 Neut2073 COG2183 53 6e-09
Transcriptional accessory protein K Contig13 Neut2157 COG2183 65 2e-11
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0138 COG3284 271 1e-73
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0202 COG3284 38 0.002
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0387 COG3284 134 1e-32
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0519 COG3284 35 0.006
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0747 COG3284 277 2e-75
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut0998 COG3284 46 1e-05
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut1209 COG3284 38 2e-04
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut1416 COG3284 284 9e-78
Transcriptional activator of acetoin/glycerol metabolism K Contig13 Neut1621 COG3284 183 1e-47
Transcriptional antiterminator K Contig13 Neut0257 COG4568 50 4e-08
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K Contig13 Neut1221 COG4977 57 4e-09
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K Contig13 Neut1346 COG4977 69 3e-13

TRANSCRIPTIONAL REGULATORS

COG Name Group Contig Gene COG ID Score Evalue
ATP-dependent transcriptional regulator protein K Contig13 Neut1839 COG2909 40 1e-04
Mn-dependent transcriptional regulator protein K Contig13 Neut0232 COG1321 35 0.007
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains K Contig13 Neut1551 COG1327 195 2e-51
Predicted transcriptional regulator protein containing the HTH domain K Contig13 Neut2044 COG1386 162 1e-41
Predicted transcriptional regulator protein K Contig11 Neut2594 COG1475 71 2e-13
Predicted transcriptional regulator protein K Contig11 Neut2616 COG1395 36 7e-04
Predicted transcriptional regulator protein K Contig11 Neut2624 COG2932 44 4e-06
Predicted transcriptional regulator protein K Contig12 Neut2556 COG1396 41 2e-05
Predicted transcriptional regulator protein K Contig12 Neut2556 COG3620 32 0.008
Predicted transcriptional regulator protein K Contig12 Neut2566 COG0789 53 5e-09
Predicted transcriptional regulator protein K Contig12 Neut2571 COG0789 86 1e-18
Predicted transcriptional regulator protein K Contig12 Neut2574 COG2932 44 3e-06
Predicted transcriptional regulator protein K Contig13 Neut0009 COG1396 37 2e-04
Predicted transcriptional regulator protein K Contig13 Neut0009 COG3620 45 1e-06
Predicted transcriptional regulator protein K Contig13 Neut0009 COG1395 35 0.001
Predicted transcriptional regulator protein K Contig13 Neut0009 COG1476 48 2e-07
Predicted transcriptional regulator protein K Contig13 Neut0034 COG0789 86 9e-19
Predicted transcriptional regulator protein K Contig13 Neut0068 COG0789 77 4e-16
Predicted transcriptional regulator protein K Contig13 Neut0085 COG0789 86 1e-18
Predicted transcriptional regulator protein K Contig13 Neut0125 COG3311 72 8e-15
Predicted transcriptional regulator protein K Contig13 Neut0167 COG1476 32 0.009
Predicted transcriptional regulator protein K Contig13 Neut0353 COG0640 45 2e-06
Predicted transcriptional regulator protein K Contig13 Neut0642 COG2524 36 0.006
Predicted transcriptional regulator protein K Contig13 Neut0667 COG0640 57 4e-10
Predicted transcriptional regulator protein K Contig13 Neut0679 COG3311 51 2e-08
Predicted transcriptional regulator protein K Contig13 Neut0769 COG2524 46 3e-06
Predicted transcriptional regulator protein K Contig13 Neut0971 COG3620 51 5e-08
Predicted transcriptional regulator protein K Contig13 Neut0971 COG2524 66 9e-13
Predicted transcriptional regulator protein K Contig13 Neut0994 COG3620 53 6e-09
Predicted transcriptional regulator protein K Contig13 Neut0994 COG2524 70 5e-14
Predicted transcriptional regulator protein K Contig13 Neut0995 COG3620 36 0.001
Predicted transcriptional regulator protein K Contig13 Neut0995 COG2524 65 1e-12
Predicted transcriptional regulator protein K Contig13 Neut1223 COG2944 38 3e-04
Predicted transcriptional regulator protein K Contig13 Neut1223 COG1396 38 3e-04
Predicted transcriptional regulator protein K Contig13 Neut1223 COG1395 35 0.003
Predicted transcriptional regulator protein K Contig13 Neut1243 COG1959 142 1e-35
Predicted transcriptional regulator protein K Contig13 Neut1288 COG2944 35 0.002
Predicted transcriptional regulator protein K Contig13 Neut1288 COG3620 36 6e-04
Predicted transcriptional regulator protein K Contig13 Neut1305 COG0789 86 1e-18
Predicted transcriptional regulator protein K Contig13 Neut1310 COG0789 53 5e-09
Predicted transcriptional regulator protein K Contig13 Neut1407 COG1959 126 9e-31
Predicted transcriptional regulator protein K Contig13 Neut1484 COG2932 64 2e-11
Predicted transcriptional regulator protein K Contig13 Neut1526 COG3620 51 5e-08
Predicted transcriptional regulator protein K Contig13 Neut1526 COG2524 49 1e-07
Predicted transcriptional regulator protein K Contig13 Neut1786 COG2524 38 0.001
Predicted transcriptional regulator protein K Contig13 Neut1811 COG3636 100 3e-23
Predicted transcriptional regulator protein K Contig13 Neut1998 COG3620 32 0.007
Predicted transcriptional regulator protein K Contig13 Neut1998 COG1709 32 0.010
Predicted transcriptional regulator protein K Contig13 Neut1998 COG1476 32 0.008
Predicted transcriptional regulator protein K Contig13 Neut2101 COG3355 39 4e-04
Predicted transcriptional regulator protein K Contig13 Neut2101 COG1695 34 0.010
Predicted transcriptional regulator protein K Contig13 Neut2101 COG1777 35 0.007
Predicted transcriptional regulator protein K Contig13 Neut2101 COG2345 101 3e-23
Predicted transcriptional regulator protein K Contig13 Neut2169 COG1396 36 0.006
Predicted transcriptional regulator protein K Contig13 Neut2250 COG3620 54 2e-08
Predicted transcriptional regulator protein K Contig13 Neut2250 COG2524 71 1e-13
Predicted transcriptional regulator protein K Contig13 Neut2253 COG3311 51 2e-08
Predicted transcriptional regulator protein K Contig13 Neut2264 COG0640 57 4e-10
Predicted transcriptional regulator protein K Contig13 Neut2415 COG2865 47 3e-06
Predicted transcriptional regulator protein K Contig13 Neut2434 COG1475 136 2e-33
Predicted transcriptional regulator protein K Contig13 Neut2527 COG0640 56 1e-09
Predicted transcriptional regulator protein K Contig13 Neut2527 COG1733 37 7e-04
Putative transcriptional regulator protein K Contig13 Neut0233 COG1521 121 4e-29
Putative transcriptional regulator protein K Contig13 Neut0448 COG1678 194 3e-51
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut0138 COG3604 337 1e-93
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut0387 COG3604 136 2e-33
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut0747 COG3604 330 2e-91
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut1209 COG3604 36 5e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut1416 COG3604 340 1e-94
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig13 Neut1621 COG3604 257 6e-70
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0138 COG3829 350 1e-97
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0219 COG3829 42 2e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0387 COG3829 148 8e-37
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0422 COG3829 47 5e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0747 COG3829 364 1.0e-102
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut0998 COG3829 37 0.004
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut1209 COG3829 40 4e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut1251 COG3829 45 3e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut1416 COG3829 359 1.0e-100
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut1425 COG3829 44 6e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut1621 COG3829 247 1e-66
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig13 Neut2377 COG3829 40 4e-04
Transcriptional regulator K Contig13 Neut0007 COG0583 39 1e-04
Transcriptional regulator K Contig13 Neut0008 COG0583 47 1e-06
Transcriptional regulator K Contig13 Neut0011 COG0583 126 2e-30
Transcriptional regulator K Contig13 Neut0415 COG1309 63 1e-11
Transcriptional regulator K Contig13 Neut0667 COG1414 33 0.006
Transcriptional regulator K Contig13 Neut0707 COG0583 153 2e-38
Transcriptional regulator K Contig13 Neut0803 COG0583 150 8e-38
Transcriptional regulator K Contig13 Neut1011 COG1309 48 4e-07
Transcriptional regulator K Contig13 Neut1186 COG0583 155 3e-39
Transcriptional regulator K Contig13 Neut1373 COG0583 150 8e-38
Transcriptional regulator K Contig13 Neut1554 COG0583 133 1e-32
Transcriptional regulator K Contig13 Neut1933 COG1309 54 9e-09
Transcriptional regulator K Contig13 Neut2264 COG1414 33 0.006
Transcriptional regulator of a riboflavin/FAD biosynthetic operon K Contig13 Neut1186 COG1339 35 0.006
Transcriptional regulator of aromatic amino acids metabolism K Contig13 Neut0138 COG3283 227 1e-60
Transcriptional regulator of aromatic amino acids metabolism K Contig13 Neut0387 COG3283 117 2e-27
Transcriptional regulator of aromatic amino acids metabolism K Contig13 Neut0747 COG3283 249 3e-67
Transcriptional regulator of aromatic amino acids metabolism K Contig13 Neut1416 COG3283 236 3e-63
Transcriptional regulator of aromatic amino acids metabolism K Contig13 Neut1621 COG3283 185 4e-48
Transcriptional regulator of heat shock gene K Contig13 Neut0769 COG1420 292 3e-80
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut0228 COG1167 117 1e-27
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut0269 COG1167 38 0.001
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut0837 COG1167 107 2e-24
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut0866 COG1167 113 3e-26
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1083 COG1167 110 3e-25
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1090 COG1167 33 0.008
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1238 COG1167 46 7e-06
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1569 COG1167 92 5e-20
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1905 COG1167 81 1e-16
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut1952 COG1167 38 0.002
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig13 Neut2137 COG1167 51 1e-07
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0138 COG1221 256 2e-69
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0202 COG1221 40 4e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0284 COG1221 43 4e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0387 COG1221 130 2e-31
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0611 COG1221 38 0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut0747 COG1221 251 8e-68
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut1209 COG1221 41 2e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut1416 COG1221 248 7e-67
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut1621 COG1221 208 5e-55
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut2048 COG1221 39 0.001
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut2377 COG1221 45 1e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 Neut2490 COG1221 37 0.004
Transcriptional regulators K Contig13 Neut0158 COG1737 49 3e-07
Transcriptional regulators K Contig13 Neut0280 COG1737 44 3e-05
Transcriptional regulators of sugar metabolism K Contig13 Neut1829 COG1349 38 9e-04
Transcriptional regulator/sugar kinase K Contig13 Neut2433 COG1940 73 1e-13
COG Name Group Contig Gene COG ID Score Evalue
Transcription-repair coupling factor (superfamily II helicase) K Contig13 Neut0129 COG1197 1311 0.0
Transcription-repair coupling factor (superfamily II helicase) K Contig13 Neut0889 COG1197 39 5e-04
Transcription-repair coupling factor (superfamily II helicase) K Contig13 Neut1082 COG1197 131 1e-31
Transcription-repair coupling factor (superfamily II helicase) K Contig13 Neut1558 COG1197 351 1e-97
Transcription-repair coupling factor (superfamily II helicase) K Contig13 Neut1682 COG1197 69 1e-12

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