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Translation, Ribosomal Structure and Biogenesis

COG Name Group Contig Gene COG ID Score Evalue
16S RNA G1207 methylase RsmC J Contig13 Neut0065 COG2813 42 5e-05
16S RNA G1207 methylase RsmC J Contig13 Neut0197 COG2813 46 3e-06
16S RNA G1207 methylase RsmC J Contig13 Neut0320 COG2813 35 0.010
16S RNA G1207 methylase RsmC J Contig13 Neut0527 COG2813 36 0.002
16S RNA G1207 methylase RsmC J Contig13 Neut0593 COG2813 70 3e-13
16S RNA G1207 methylase RsmC J Contig13 Neut0682 COG2813 44 2e-05
16S RNA G1207 methylase RsmC J Contig13 Neut0828 COG2813 80 2e-16
16S RNA G1207 methylase RsmC J Contig13 Neut1059 COG2813 41 7e-05
16S RNA G1207 methylase RsmC J Contig13 Neut1898 COG2813 45 6e-06
16S RNA G1207 methylase RsmC J Contig13 Neut2436 COG2813 39 4e-04
16S RNA G1207 methylase RsmC J Contig13 Neut2507 COG2813 39 3e-04
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase J Contig13 Neut0005 COG1187 199 1e-52
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase J Contig13 Neut0592 COG1187 237 9e-64
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase J Contig13 Neut1230 COG1187 52 7e-08
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase J Contig13 Neut1706 COG1187 39 4e-04
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase J Contig13 Neut2203 COG1187 124 3e-30
23S rRNA methylase J Contig13 Neut0065 COG0293 36 0.005
23S rRNA methylase J Contig13 Neut0997 COG0293 227 5e-61
2'-5' RNA ligase J Contig13 Neut1299 COG1514 102 2e-23
2-methylthioadenine synthetase J Contig13 Neut1389 COG0621 448 1.0e-127
2-methylthioadenine synthetase J Contig13 Neut1789 COG0621 538 1.0e-154
Acetyltransferase including N-acetylase of ribosomal protein J Contig13 Neut0349 COG1670 42 3e-05

AMINOACYL-TRNA SYNTHETASES AND ALTERNATIVE SYSTEMS FOR AMINO ACID ACTIVATION

COG Name Group Contig Gene COG ID Score Evalue
Alanyl-tRNA synthetase J Contig13 Neut0791 COG0013 1155 0.0
Alanyl-tRNA synthetase J Contig13 Neut2331 COG0013 62 1e-10
Arginyl-tRNA synthetase J Contig13 Neut0499 COG0018 41 2e-04
Arginyl-tRNA synthetase J Contig13 Neut0602 COG0018 45 2e-05
Arginyl-tRNA synthetase J Contig13 Neut1429 COG0018 45 2e-05
Arginyl-tRNA synthetase J Contig13 Neut1439 COG0018 40 0.001
Arginyl-tRNA synthetase J Contig13 Neut1605 COG0018 513 1.0e-146
Arginyl-tRNA synthetase J Contig13 Neut1868 COG0018 38 0.003
Aspartyl/asparaginyl-tRNA synthetase J Contig13 Neut0616 COG0017 181 1e-46
Aspartyl/asparaginyl-tRNA synthetase J Contig13 Neut0872 COG0017 184 2e-47
Aspartyl-tRNA synthetase J Contig13 Neut0616 COG0173 941 0.0
Aspartyl-tRNA synthetase J Contig13 Neut0872 COG0173 115 9e-27
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase J Contig13 Neut1594 COG0154 507 1.0e-145
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) J Contig13 Neut1595 COG0064 686 0.0
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit J Contig13 Neut1593 COG0721 94 3e-21
Cysteinyl-tRNA synthetase J Contig13 Neut0191 COG0215 664 0.0
Cysteinyl-tRNA synthetase J Contig13 Neut1429 COG0215 47 5e-06
Cysteinyl-tRNA synthetase J Contig13 Neut1439 COG0215 63 9e-11
Cysteinyl-tRNA synthetase J Contig13 Neut1921 COG0215 51 3e-07
Glutamyl- and glutaminyl-tRNA synthetase J Contig13 Neut0499 COG0008 479 1.0e-136
Glutamyl- and glutaminyl-tRNA synthetase J Contig13 Neut0871 COG0008 357 1e-99
Glycyl-tRNA synthetase alpha subunit J Contig13 Neut1869 COG0752 502 1.0e-143
Glycyl-tRNA synthetase beta subunit J Contig13 Neut1605 COG0751 39 0.001
Glycyl-tRNA synthetase beta subunit J Contig13 Neut1868 COG0751 689 0.0
Glycyl-tRNA synthetase (class II) J Contig13 Neut1247 COG0423 45 2e-05
Glycyl-tRNA synthetase (class II) J Contig13 Neut2331 COG0423 38 0.002
Histidyl-tRNA synthetase J Contig13 Neut0966 COG0124 117 1e-27
Histidyl-tRNA synthetase J Contig13 Neut1247 COG0124 40 5e-04
Histidyl-tRNA synthetase J Contig13 Neut2167 COG0124 480 1.0e-137
Histidyl-tRNA synthetase J Contig13 Neut2331 COG0124 53 9e-08
Isoleucyl-tRNA synthetase J Contig13 Neut0191 COG0060 46 8e-06
Isoleucyl-tRNA synthetase J Contig13 Neut0602 COG0060 369 1.0e-103
Isoleucyl-tRNA synthetase J Contig13 Neut1429 COG0060 248 1e-66
Isoleucyl-tRNA synthetase J Contig13 Neut1439 COG0060 1158 0.0
Isoleucyl-tRNA synthetase J Contig13 Neut1921 COG0060 66 1e-11
Leucyl-tRNA synthetase J Contig13 Neut0191 COG0495 59 9e-10
Leucyl-tRNA synthetase J Contig13 Neut0602 COG0495 213 4e-56
Leucyl-tRNA synthetase J Contig13 Neut1429 COG0495 1027 0.0
Leucyl-tRNA synthetase J Contig13 Neut1439 COG0495 180 3e-46
Leucyl-tRNA synthetase J Contig13 Neut1921 COG0495 79 9e-16
Lysyl-tRNA synthetase (class I) J Contig13 Neut0191 COG1384 44 3e-05
Lysyl-tRNA synthetase (class I) J Contig13 Neut1439 COG1384 38 0.003
Lysyl-tRNA synthetase (class I) J Contig13 Neut1921 COG1384 40 6e-04
Lysyl-tRNA synthetase (class II) J Contig13 Neut0616 COG1190 128 1e-30
Lysyl-tRNA synthetase (class II) J Contig13 Neut0872 COG1190 678 0.0
Phenylalanyl-tRNA synthetase alpha subunit J Contig13 Neut2327 COG0016 421 1.0e-119
Phenylalanyl-tRNA synthetase alpha subunit J Contig13 Neut2327 COG2024 52 6e-08
Phenylalanyl-tRNA synthetase beta subunit J Contig13 Neut2326 COG0072 591 1.0e-170
Prolyl-tRNA synthetase J Contig13 Neut0263 COG0442 49 7e-07
Prolyl-tRNA synthetase J Contig13 Neut1247 COG0442 561 1.0e-161
Prolyl-tRNA synthetase J Contig13 Neut2331 COG0442 109 5e-25
Seryl-tRNA synthetase J Contig13 Neut0263 COG0172 568 1.0e-163
Seryl-tRNA synthetase J Contig13 Neut1247 COG0172 44 2e-05
Seryl-tRNA synthetase J Contig13 Neut2331 COG0172 69 1e-12
Threonyl-tRNA synthetase J Contig13 Neut0263 COG0441 48 1e-06
Threonyl-tRNA synthetase J Contig13 Neut1247 COG0441 69 8e-13
Threonyl-tRNA synthetase J Contig13 Neut2167 COG0441 47 3e-06
Threonyl-tRNA synthetase J Contig13 Neut2331 COG0441 798 0.0
Tryptophanyl-tRNA synthetase J Contig13 Neut1545 COG0180 65 1e-11
Tryptophanyl-tRNA synthetase J Contig13 Neut2042 COG0180 228 4e-61
Tyrosyl-tRNA synthetase J Contig13 Neut1545 COG0162 408 1.0e-115
Valyl-tRNA synthetase J Contig13 Neut0191 COG0525 44 3e-05
Valyl-tRNA synthetase J Contig13 Neut0602 COG0525 1172 0.0
Valyl-tRNA synthetase J Contig13 Neut1429 COG0525 296 5e-81
Valyl-tRNA synthetase J Contig13 Neut1439 COG0525 408 1.0e-114
Valyl-tRNA synthetase J Contig13 Neut1921 COG0525 53 8e-08
COG Name Group Contig Gene COG ID Score Evalue
Cytosine/adenosine deaminase J Contig13 Neut0187 COG0590 87 6e-19
Cytosine/adenosine deaminase J Contig13 Neut0594 COG0590 182 1e-47
Cytosine/adenosine deaminase J Contig13 Neut1091 COG0590 72 9e-14
Cytosine/adenosine deaminase J Contig13 Neut1711 COG0590 88 3e-19
Dimethyladenosine transferase (rRNA methylation) J Contig13 Neut0197 COG0030 53 2e-08
Dimethyladenosine transferase (rRNA methylation) J Contig13 Neut0682 COG0030 42 4e-05
Dimethyladenosine transferase (rRNA methylation) J Contig13 Neut1059 COG0030 38 6e-04
Dimethyladenosine transferase (rRNA methylation) J Contig13 Neut1219 COG0030 273 9e-75
Dimethyladenosine transferase (rRNA methylation) J Contig13 Neut2507 COG0030 39 3e-04
Diphthamide biosynthesis methyltransferase J Contig13 Neut1002 COG1798 42 9e-05
Diphthamide biosynthesis methyltransferase J Contig13 Neut1660 COG1798 40 2e-04
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut0243 COG0189 53 4e-08
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut0327 COG0189 53 3e-08
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut0455 COG0189 42 2e-04
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut0904 COG0189 79 4e-16
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut0953 COG0189 222 4e-59
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut1401 COG0189 70 4e-13
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut1402 COG0189 50 9e-07
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut1899 COG0189 46 7e-06
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut2116 COG0189 59 4e-10
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) J Contig13 Neut2470 COG0189 39 0.002
Glu-tRNAGln amidotransferase subunit E (contains GAD domain) J Contig13 Neut1595 COG2511 91 1e-19
GTP-binding protein required for 40S ribosome biogenesis J Contig13 Neut0890 COG5192 36 0.010
Methionyl-tRNA synthetase J Contig13 Neut0191 COG0143 54 3e-08
Methionyl-tRNA synthetase J Contig13 Neut0602 COG0143 96 1e-20
Methionyl-tRNA synthetase J Contig13 Neut1429 COG0143 118 2e-27
Methionyl-tRNA synthetase J Contig13 Neut1439 COG0143 78 3e-15
Methionyl-tRNA synthetase J Contig13 Neut1921 COG0143 591 1.0e-170
Methylase of polypeptide chain release factors J Contig13 Neut0065 COG2890 35 0.009
Methylase of polypeptide chain release factors J Contig13 Neut0106 COG2890 36 0.005
Methylase of polypeptide chain release factors J Contig13 Neut0197 COG2890 54 8e-09
Methylase of polypeptide chain release factors J Contig13 Neut0320 COG2890 50 3e-07
Methylase of polypeptide chain release factors J Contig13 Neut0527 COG2890 34 0.007
Methylase of polypeptide chain release factors J Contig13 Neut0593 COG2890 202 3e-53
Methylase of polypeptide chain release factors J Contig13 Neut0682 COG2890 48 5e-07
Methylase of polypeptide chain release factors J Contig13 Neut0828 COG2890 252 2e-68
Methylase of polypeptide chain release factors J Contig13 Neut1059 COG2890 42 4e-05
Methylase of polypeptide chain release factors J Contig13 Neut1350 COG2890 35 0.003
Methylase of polypeptide chain release factors J Contig13 Neut1898 COG2890 53 3e-08
Methylase of polypeptide chain release factors J Contig13 Neut2342 COG2890 39 3e-04
Methylase of polypeptide chain release factors J Contig13 Neut2436 COG2890 36 0.003
Methylase of polypeptide chain release factors J Contig13 Neut2507 COG2890 52 3e-08
N2 N2-dimethylguanosine tRNA methyltransferase J Contig13 Neut0828 COG1867 42 6e-05
N2 N2-dimethylguanosine tRNA methyltransferase J Contig13 Neut2342 COG1867 37 0.001
NAD(FAD)-utilizing enzyme possibly involved in translation J Contig13 Neut2437 COG1206 79 1e-15
NMD protein affecting ribosome stability and mRNA decay J Contig13 Neut0972 COG1499 38 4e-04
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0159 COG1208 174 5e-45
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0229 COG1208 41 6e-05
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0268 COG1208 99 4e-22
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0279 COG1208 116 4e-27
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0618 COG1208 56 6e-09
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0698 COG1208 104 9e-24
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut0991 COG1208 41 4e-05
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut1292 COG1208 172 5e-44
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut1525 COG1208 45 6e-06
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut1880 COG1208 127 1e-30
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) J Contig13 Neut2374 COG1208 158 3e-40
Peptide chain release factor RF-3 J Contig13 Neut0555 COG4108 215 8e-57
Peptide chain release factor RF-3 J Contig13 Neut0556 COG4108 74 1e-14
Peptide chain release factor RF-3 J Contig13 Neut1189 COG4108 58 2e-09
Peptide chain release factor RF-3 J Contig13 Neut1646 COG4108 52 2e-07
Peptide chain release factor RF-3 J Contig13 Neut1781 COG4108 110 2e-25
Peptide chain release factor RF-3 J Contig13 Neut1802 COG4108 74 1e-14
Peptide chain release factor RF-3 J Contig13 Neut2442 COG4108 771 0.0
Peptide chain release factor RF-3 J Contig13 Neut2514 COG4108 112 7e-26
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) J Contig13 Neut0308 COG1185 58 9e-10
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) J Contig13 Neut0400 COG1185 70 4e-13
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) J Contig13 Neut0664 COG1185 46 1e-05
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) J Contig13 Neut1619 COG1185 38 0.003
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) J Contig13 Neut2157 COG1185 975 0.0
Predicted exonuclease of the beta-lactamase fold involved in RNA processing J Contig13 Neut0209 COG1236 295 6e-81
Predicted exonuclease of the beta-lactamase fold involved in RNA processing J Contig13 Neut2129 COG1236 69 4e-13
Predicted GTPase probable translation factor J Contig13 Neut0957 COG0012 99 3e-22
Predicted GTPase probable translation factor J Contig13 Neut0962 COG0012 45 9e-06
Predicted GTPase probable translation factor J Contig13 Neut1143 COG0012 520 1.0e-149
Predicted GTPase probable translation factor J Contig13 Neut1777 COG0012 35 0.008
Predicted GTPase probable translation factor J Contig13 Neut2164 COG0012 44 3e-05
Predicted RNA-binding protein containing KH domain possibly ribosomal protein J Contig13 Neut0996 COG1534 83 8e-18
Predicted RNA-binding protein (contains PUA domain) J Contig13 Neut0958 COG2016 35 0.009
Predicted RNA methylase J Contig13 Neut0065 COG2263 43 2e-05
Predicted RNA methylase J Contig13 Neut0320 COG2263 39 6e-04
Predicted RNA methylase J Contig13 Neut0593 COG2263 41 8e-05
Predicted RNA methylase J Contig13 Neut0682 COG2263 35 0.005
Predicted RNA methylase J Contig13 Neut0828 COG2263 53 4e-08
Predicted RNA methylase J Contig13 Neut1059 COG2263 43 2e-05
Predicted RNA methylase J Contig13 Neut1898 COG2263 60 3e-10
Predicted RNA methylase J Contig13 Neut2342 COG2263 50 1e-07
Predicted RNA methylase J Contig13 Neut2507 COG2263 49 4e-07
Predicted rRNA methylase J Contig13 Neut0582 COG1189 44 6e-06
Predicted rRNA methylase J Contig13 Neut0997 COG1189 47 9e-07
Predicted rRNA methylase J Contig13 Neut2524 COG1189 47 5e-07
Predicted rRNA methylase (SpoU class) J Contig13 Neut0408 COG0219 55 5e-09
Predicted rRNA methylase (SpoU class) J Contig13 Neut1618 COG0219 50 2e-07
Predicted rRNA methylase (SpoU class) J Contig13 Neut1631 COG0219 69 2e-13
Predicted rRNA methylase (SpoU class) J Contig13 Neut2140 COG0219 228 1e-61
Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain J Contig13 Neut2336 COG2117 37 0.002
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain J Contig13 Neut2065 COG0482 43 5e-05
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain J Contig13 Neut2251 COG0482 51 2e-07
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain J Contig13 Neut2336 COG0482 486 1.0e-138
Pseudouridine synthase J Contig13 Neut1644 COG0130 209 2e-55
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut0005 COG0564 50 1e-07
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut0582 COG0564 35 0.005
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut0592 COG0564 55 7e-09
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut1230 COG0564 301 5e-83
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut1706 COG0564 232 2e-62
Pseudouridylate synthase 23S RNA-specific J Contig13 Neut2524 COG0564 40 9e-05
Pseudouridylate synthase J Contig13 Neut1150 COG0101 304 4e-84
Putative translation factor (SUA5) J Contig13 Neut2040 COG0009 203 1e-53
Putative translation factor (SUA5) J Contig13 Neut2320 COG0009 229 2e-61
Putative translation initiation inhibitor yjgF family J Contig13 Neut1514 COG0251 90 7e-20
Putative translation initiation inhibitor yjgF family J Contig13 Neut1557 COG0251 118 1e-28
Queuine/archaeosine tRNA-ribosyltransferase J Contig13 Neut1431 COG0343 534 1.0e-153
Ribonuclease D J Contig13 Neut0778 COG0349 41 3e-04
Ribonuclease D J Contig13 Neut2175 COG0349 34 0.010
Ribonuclease G and E J Contig13 Neut1614 COG1530 473 1.0e-134
Ribonuclease G and E J Contig13 Neut1707 COG1530 509 1.0e-145
Ribosomal protein L11 methylase J Contig13 Neut0197 COG2264 43 2e-05
Ribosomal protein L11 methylase J Contig13 Neut0320 COG2264 48 8e-07
Ribosomal protein L11 methylase J Contig13 Neut0527 COG2264 34 0.009
Ribosomal protein L11 methylase J Contig13 Neut0593 COG2264 46 4e-06
Ribosomal protein L11 methylase J Contig13 Neut0682 COG2264 50 3e-07
Ribosomal protein L11 methylase J Contig13 Neut0828 COG2264 60 2e-10
Ribosomal protein L11 methylase J Contig13 Neut0881 COG2264 38 5e-04
Ribosomal protein L11 methylase J Contig13 Neut1059 COG2264 36 0.004
Ribosomal protein L11 methylase J Contig13 Neut1898 COG2264 284 5e-78
Ribosomal protein L11 methylase J Contig13 Neut2342 COG2264 34 0.007
Ribosomal protein L11 methylase J Contig13 Neut2507 COG2264 51 7e-08

RIBOSOMAL PROTEINS - LARGE SUBUNIT

COG Name Group Contig Gene COG ID Score Evalue
Ribosomal protein L10 J Contig13 Neut1797 COG0244 144 3e-36
Ribosomal protein L11 J Contig13 Neut1799 COG0080 193 5e-51
Ribosomal protein L13 J Contig13 Neut0762 COG0102 200 5e-53
Ribosomal protein L14 J Contig13 Neut0568 COG0093 181 2e-47
Ribosomal protein L15 J Contig13 Neut0577 COG0200 105 2e-24
Ribosomal protein L16/L10E J Contig13 Neut0565 COG0197 176 4e-46
Ribosomal protein L17 J Contig13 Neut0584 COG0203 167 2e-43
Ribosomal protein L18 J Contig13 Neut0574 COG0256 109 7e-26
Ribosomal protein L19 J Contig13 Neut0442 COG0335 146 7e-37
Ribosomal protein L1 J Contig13 Neut1798 COG0081 285 1e-78
Ribosomal protein L20 J Contig13 Neut2328 COG0292 152 7e-39
Ribosomal protein L21 J Contig13 Neut0955 COG0261 136 4e-34
Ribosomal protein L22 J Contig13 Neut0563 COG0091 123 5e-30
Ribosomal protein L23 J Contig13 Neut0560 COG0089 78 2e-16
Ribosomal protein L24 J Contig13 Neut0569 COG0198 76 5e-16
Ribosomal protein L25 (general stress protein Ctc) J Contig13 Neut1141 COG1825 93 1e-20
Ribosomal protein L27 J Contig13 Neut0956 COG0211 117 1e-28
Ribosomal protein L28 J Contig13 Neut0781 COG0227 92 6e-21
Ribosomal protein L2 J Contig13 Neut0561 COG0090 364 1.0e-102
Ribosomal protein L30/L7E J Contig13 Neut0576 COG1841 58 1e-10
Ribosomal protein L32 J Contig13 Neut0472 COG0333 65 9e-13
Ribosomal protein L33 J Contig13 Neut0780 COG0267 56 8e-10
Ribosomal protein L35 J Contig13 Neut2329 COG0291 60 3e-11
Ribosomal protein L3 J Contig13 Neut0558 COG0087 245 3e-66
Ribosomal protein L4 J Contig13 Neut0559 COG0088 203 8e-54
Ribosomal protein L5 J Contig13 Neut0570 COG0094 263 4e-72
Ribosomal protein L6P/L9E J Contig13 Neut0573 COG0097 189 1e-49
Ribosomal protein L7/L12 J Contig13 Neut1796 COG0222 111 2e-26
Ribosomal protein L9 J Contig13 Neut2379 COG0359 152 1e-38

RIBOSOMAL PROTEINS - SMALL SUBUNIT

COG Name Group Contig Gene COG ID Score Evalue
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut0400 COG1098 63 7e-11
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut0664 COG1098 48 2e-06
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut0681 COG1098 32 0.009
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut1614 COG1098 37 0.003
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut1619 COG1098 37 0.005
Predicted RNA binding protein (contains ribosomal protein S1 domain) J Contig13 Neut2157 COG1098 78 2e-15
Ribosomal protein S10 J Contig13 Neut0557 COG0051 149 3e-38
Ribosomal protein S11 J Contig13 Neut0581 COG0100 183 3e-48
Ribosomal protein S12 J Contig13 Neut0553 COG0048 181 1e-47
Ribosomal protein S13 J Contig13 Neut0580 COG0099 151 2e-38
Ribosomal protein S14 J Contig13 Neut0571 COG0199 74 2e-15
Ribosomal protein S15P/S13E J Contig13 Neut2156 COG0184 102 4e-24
Ribosomal protein S16 J Contig13 Neut0445 COG0228 106 3e-25
Ribosomal protein S17 J Contig13 Neut0567 COG0186 91 2e-20
Ribosomal protein S18 J Contig13 Neut2380 COG0238 84 2e-18
Ribosomal protein S19 J Contig13 Neut0562 COG0185 136 4e-34
Ribosomal protein S1 J Contig13 Neut0400 COG0539 576 1.0e-165
Ribosomal protein S1 J Contig13 Neut0664 COG0539 56 1e-08
Ribosomal protein S1 J Contig13 Neut0681 COG0539 38 9e-05
Ribosomal protein S1 J Contig13 Neut1619 COG0539 42 2e-04
Ribosomal protein S1 J Contig13 Neut2157 COG0539 77 4e-15
Ribosomal protein S20 J Contig13 Neut1673 COG0268 65 8e-13
Ribosomal protein S21 J Contig13 Neut0297 COG0828 49 9e-08
Ribosomal protein S2 J Contig13 Neut2035 COG0052 337 3e-94
Ribosomal protein S3 J Contig13 Neut0564 COG0092 267 4e-73
Ribosomal protein S4 and related protein J Contig13 Neut0582 COG0522 198 3e-52
Ribosomal protein S5 J Contig13 Neut0575 COG0098 198 2e-52
Ribosomal protein S6 J Contig13 Neut2382 COG0360 135 1e-33
Ribosomal protein S7 J Contig13 Neut0554 COG0049 191 2e-50
Ribosomal protein S8 J Contig13 Neut0572 COG0096 166 4e-43
Ribosomal protein S9 J Contig13 Neut0763 COG0103 168 1e-43
COG Name Group Contig Gene COG ID Score Evalue
Ribosome-associated chaperone zuotin J Contig13 Neut0413 COG5269 59 4e-10
Ribosome-associated chaperone zuotin J Contig13 Neut1445 COG5269 42 4e-05
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) J Contig13 Neut2524 COG1188 95 2e-21
Ribosome-associated protein Y (PSrp-1) J Contig13 Neut2304 COG1544 98 2e-22
Ribosome-binding factor A J Contig13 Neut1645 COG0858 118 8e-29
RimM protein required for 16S rRNA processing J Contig13 Neut0444 COG0806 152 1e-38
RNA-binding protein Rrp4 and related protein (contain S1 domain and KH domain) J Contig13 Neut0400 COG1097 37 0.003
RNase PH J Contig13 Neut0308 COG0689 275 2e-75
RNase PH J Contig13 Neut2157 COG0689 99 1e-21
RNase PH-related exoribonuclease J Contig13 Neut0308 COG2123 76 3e-15
RNase PH-related exoribonuclease J Contig13 Neut2157 COG2123 46 9e-06
RNase P protein component J Contig13 Neut2152 COG0594 63 7e-12
rRNA methylase J Contig13 Neut0408 COG0565 238 3e-64
rRNA methylase J Contig13 Neut0408 COG0566 57 1e-09
rRNA methylase J Contig13 Neut1618 COG0565 52 5e-08
rRNA methylase J Contig13 Neut1618 COG0566 233 8e-63
rRNA methylase J Contig13 Neut1631 COG0565 50 1e-07
rRNA methylase J Contig13 Neut1631 COG0566 175 3e-45
rRNA methylase J Contig13 Neut2140 COG0565 54 5e-09
rRNA methylase J Contig13 Neut2140 COG0566 77 8e-16
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) J Contig13 Neut1430 COG0809 437 1.0e-124
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0065 COG2265 35 0.007
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0197 COG2265 55 4e-09
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0320 COG2265 39 5e-04
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0390 COG2265 35 0.008
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0593 COG2265 39 5e-04
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0682 COG2265 45 8e-06
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut0828 COG2265 53 3e-08
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut1059 COG2265 36 0.002
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut1898 COG2265 45 9e-06
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut2280 COG2265 35 0.008
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut2342 COG2265 48 5e-07
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase J Contig13 Neut2507 COG2265 38 5e-04
Selenocysteine-specific translation elongation factor J Contig13 Neut0164 COG3276 58 1e-09
Selenocysteine-specific translation elongation factor J Contig13 Neut0555 COG3276 48 3e-06
Selenocysteine-specific translation elongation factor J Contig13 Neut0556 COG3276 187 9e-49
Selenocysteine-specific translation elongation factor J Contig13 Neut1189 COG3276 125 7e-30
Selenocysteine-specific translation elongation factor J Contig13 Neut1646 COG3276 95 2e-20
Selenocysteine-specific translation elongation factor J Contig13 Neut1781 COG3276 85 1e-17
Selenocysteine-specific translation elongation factor J Contig13 Neut1802 COG3276 189 4e-49
Selenocysteine-specific translation elongation factor J Contig13 Neut2155 COG3276 38 0.002
Selenocysteine-specific translation elongation factor J Contig13 Neut2442 COG3276 52 9e-08
Selenocysteine-specific translation elongation factor J Contig13 Neut2514 COG3276 54 3e-08
Small protein A (tmRNA-binding) J Contig13 Neut1939 COG2913 97 7e-22
Superfamily II DNA and RNA helicase J Contig13 Neut0129 COG0513 72 2e-13
Superfamily II DNA and RNA helicase J Contig13 Neut0889 COG0513 415 1.0e-117
Superfamily II DNA and RNA helicase J Contig13 Neut1082 COG0513 67 3e-12
Superfamily II DNA and RNA helicase J Contig13 Neut1215 COG0513 37 0.004
Superfamily II DNA and RNA helicase J Contig13 Neut1336 COG0513 41 5e-04
Superfamily II DNA and RNA helicase J Contig13 Neut1558 COG0513 72 1e-13
Superfamily II DNA and RNA helicase J Contig13 Neut1668 COG0513 408 1.0e-115
Superfamily II DNA and RNA helicase J Contig13 Neut2523 COG0513 98 2e-21
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut0164 COG5256 116 4e-27
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut0555 COG5256 63 5e-11
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut0556 COG5256 250 2e-67
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut1189 COG5256 261 6e-71
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut1646 COG5256 85 2e-17
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut1781 COG5256 111 1e-25
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut1802 COG5256 250 2e-67
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut2164 COG5256 39 7e-04
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut2442 COG5256 66 4e-12
Translation elongation factor EF-1alpha (GTPase) J Contig13 Neut2514 COG5256 105 1e-23

TRANSLATION FACTORS AND ENZYMES INVOLVED IN TRANSLATION

COG Name Group Contig Gene COG ID Score Evalue
GTPase - translation elongation factors J Contig13 Neut0164 COG0050 42 1e-04
GTPase - translation elongation factors J Contig13 Neut0555 COG0050 58 2e-09
GTPase - translation elongation factors J Contig13 Neut0556 COG0050 700 0.0
GTPase - translation elongation factors J Contig13 Neut1189 COG0050 113 3e-26
GTPase - translation elongation factors J Contig13 Neut1646 COG0050 76 1e-14
GTPase - translation elongation factors J Contig13 Neut1781 COG0050 99 5e-22
GTPase - translation elongation factors J Contig13 Neut1802 COG0050 700 0.0
GTPase - translation elongation factors J Contig13 Neut2442 COG0050 56 9e-09
GTPase - translation elongation factors J Contig13 Neut2514 COG0050 112 7e-26
Methionine aminopeptidase J Contig13 Neut0307 COG0024 323 1e-89
Methionine aminopeptidase J Contig13 Neut2095 COG0024 91 1e-19
Methionyl-tRNA formyltransferase J Contig13 Neut0391 COG0223 379 1.0e-106
Methionyl-tRNA formyltransferase J Contig13 Neut2278 COG0223 78 4e-16
N-formylmethionyl-tRNA deformylase J Contig13 Neut0392 COG0242 198 1e-52
N-formylmethionyl-tRNA deformylase J Contig13 Neut0944 COG0242 176 8e-46
Peptidyl-tRNA hydrolase J Contig13 Neut0907 COG0193 151 2e-37
Peptidyl-tRNA hydrolase J Contig13 Neut0908 COG0193 149 5e-37
Peptidyl-tRNA hydrolase J Contig13 Neut1142 COG0193 245 1e-66
Protein chain release factor A J Contig13 Neut0827 COG0216 511 1.0e-146
Protein chain release factor A J Contig13 Neut1316 COG0216 302 3e-83
Protein chain release factor B J Contig13 Neut0827 COG1186 206 1e-54
Protein chain release factor B J Contig13 Neut1316 COG1186 349 2e-97
Ribosome recycling factor J Contig13 Neut2032 COG0233 228 2e-61
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) J Contig13 Neut1302 COG0231 122 1e-29
Translation elongation factors (GTPase) J Contig13 Neut0555 COG0480 1019 0.0
Translation elongation factors (GTPase) J Contig13 Neut0556 COG0480 95 8e-21
Translation elongation factors (GTPase) J Contig13 Neut1189 COG0480 67 2e-12
Translation elongation factors (GTPase) J Contig13 Neut1646 COG0480 86 8e-18
Translation elongation factors (GTPase) J Contig13 Neut1781 COG0480 150 3e-37
Translation elongation factors (GTPase) J Contig13 Neut1802 COG0480 95 8e-21
Translation elongation factors (GTPase) J Contig13 Neut2442 COG0480 273 2e-74
Translation elongation factors (GTPase) J Contig13 Neut2514 COG0480 148 1e-36
Translation elongation factor Ts J Contig13 Neut2034 COG0264 324 3e-90
Translation initiation factor 1 (IF-1) J Contig13 Neut0579 COG0361 104 1e-24
Translation initiation factor 2 alpha subunit (eIF-2alpha) J Contig13 Neut0400 COG1093 63 5e-11
Translation initiation factor 2 alpha subunit (eIF-2alpha) J Contig13 Neut2157 COG1093 64 3e-11
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut0555 COG0532 58 3e-09
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut0556 COG0532 90 3e-19
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut1189 COG0532 59 9e-10
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut1646 COG0532 656 0.0
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut1777 COG0532 39 6e-04
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut1781 COG0532 99 6e-22
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut1802 COG0532 90 3e-19
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut2442 COG0532 63 4e-11
Translation initiation factor 2 (IF-2; GTPase) J Contig13 Neut2514 COG0532 73 7e-14
Translation initiation factor 3 (IF-3) J Contig13 Neut2330 COG0290 209 1e-55
COG Name Group Contig Gene COG ID Score Evalue
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut0556 COG5257 144 1e-35
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut1189 COG5257 60 2e-10
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut1646 COG5257 63 7e-11
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut1781 COG5257 61 2e-10
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut1802 COG5257 143 2e-35
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase) J Contig13 Neut2514 COG5257 62 2e-10
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0154 COG2519 37 0.003
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0197 COG2519 66 2e-12
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0320 COG2519 46 3e-06
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0438 COG2519 42 4e-05
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0527 COG2519 38 5e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0593 COG2519 40 2e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0682 COG2519 50 2e-07
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0828 COG2519 42 5e-05
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut0997 COG2519 34 0.007
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut1059 COG2519 38 8e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut1436 COG2519 36 0.002
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut1898 COG2519 37 0.002
tRNA(1-methyladenosine) methyltransferase and related methyltransferase J Contig13 Neut2507 COG2519 43 3e-05
tRNA and rRNA cytosine-C5-methylase J Contig13 Neut0065 COG0144 37 0.002
tRNA and rRNA cytosine-C5-methylase J Contig13 Neut0197 COG0144 34 0.007
tRNA and rRNA cytosine-C5-methylase J Contig13 Neut0390 COG0144 294 9e-81
tRNA and rRNA cytosine-C5-methylase J Contig13 Neut0828 COG0144 38 6e-04
tRNA and rRNA cytosine-C5-methylase J Contig13 Neut2280 COG0144 293 2e-80
tRNA delta(2)-isopentenylpyrophosphate transferase J Contig13 Neut0202 COG0324 38 0.002
tRNA delta(2)-isopentenylpyrophosphate transferase J Contig13 Neut0386 COG0324 335 3e-93
tRNA delta(2)-isopentenylpyrophosphate transferase J Contig13 Neut0611 COG0324 35 0.009
tRNA-dihydrouridine synthase J Contig13 Neut1208 COG0042 345 4e-96
tRNA-dihydrouridine synthase J Contig13 Neut1908 COG0042 47 1e-06
tRNA-dihydrouridine synthase J Contig13 Neut2182 COG0042 41 1e-04
tRNA-(guanine-N1)-methyltransferase J Contig13 Neut0443 COG0336 331 3e-92
tRNA nucleotidyltransferase/poly(A) polymerase J Contig13 Neut0503 COG0617 271 5e-74
tRNA nucleotidyltransferase/poly(A) polymerase J Contig13 Neut2296 COG0617 285 7e-78
Truncated possibly inactive lysyl-tRNA synthetase (class II) J Contig13 Neut0616 COG2269 58 2e-09
Truncated possibly inactive lysyl-tRNA synthetase (class II) J Contig13 Neut0872 COG2269 215 6e-57

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