files

Summary of the tRNAs found by tRNAscan-se

Amino Acid	Count
Ala	4
Arg	8
Asn	2
Asp	2
Cys	2
Gln	2
Glu	2
Gly	6
His	2
Ile	2
Leu	10
Lys	2
Met	6
Phe	2
Pro	6
Pseudo	0
Ser	8
Thr	6
Trp	2
Tyr	2
Undet	0
Val	6

List of tRNAs found by tRNAscan-se

Amino Acid	Anticodon	Contig	tRNA	tRNA Location	Intron Location	Cove Score	HMM Score
Ala	GGC	all_bases	22	2134754..2134829	0..0	82.62	67.58
Ala	GGC	all_bases	22	2134754..2134829	0..0	82.62	67.58
Ala	TGC	all_bases	6	70852..70927	0..0	90.96	78.83
Ala	TGC	all_bases	6	70852..70927	0..0	90.96	78.83
Arg	ACG	all_bases	35	1432641..1432565	0..0	86.25	70.42
Arg	ACG	all_bases	35	1432641..1432565	0..0	86.25	70.42
Arg	CCG	all_bases	31	1630188..1630113	0..0	82.17	53.16
Arg	CCG	all_bases	31	1630188..1630113	0..0	82.17	53.16
Arg	CCT	all_bases	15	545460..545535	0..0	78.20	46.79
Arg	CCT	all_bases	15	545460..545535	0..0	78.20	46.79
Arg	TCT	all_bases	33	1460903..1460827	0..0	89.17	66.59
Arg	TCT	all_bases	33	1460903..1460827	0..0	89.17	66.59
Asn	GTT	all_bases	37	1258761..1258686	0..0	85.92	62.24
Asn	GTT	all_bases	37	1258761..1258686	0..0	85.92	62.24
Asp	GTC	all_bases	26	2396719..2396643	0..0	94.55	73.65
Asp	GTC	all_bases	26	2396719..2396643	0..0	94.55	73.65
Cys	GCA	all_bases	2	6941..7014	0..0	66.41	47.55
Cys	GCA	all_bases	2	6941..7014	0..0	66.41	47.55
Gln	TTG	all_bases	29	1974145..1974071	0..0	76.23	51.24
Gln	TTG	all_bases	29	1974145..1974071	0..0	76.23	51.24
Glu	TTC	all_bases	23	2134857..2134932	0..0	61.55	32.62
Glu	TTC	all_bases	23	2134857..2134932	0..0	61.55	32.62
Gly	CCC	all_bases	8	317975..318048	0..0	73.37	55.79
Gly	CCC	all_bases	8	317975..318048	0..0	73.37	55.79
Gly	GCC	all_bases	1	6774..6849	0..0	88.26	64.10
Gly	GCC	all_bases	1	6774..6849	0..0	88.26	64.10
Gly	TCC	all_bases	12	451659..451732	0..0	82.17	64.72
Gly	TCC	all_bases	12	451659..451732	0..0	82.17	64.72
His	GTG	all_bases	34	1460775..1460700	0..0	82.63	61.86
His	GTG	all_bases	34	1460775..1460700	0..0	82.63	61.86
Ile	GAT	all_bases	5	70772..70848	0..0	100.23	77.52
Ile	GAT	all_bases	5	70772..70848	0..0	100.23	77.52
Leu	CAA	all_bases	10	414084..414170	0..0	76.49	46.28
Leu	CAA	all_bases	10	414084..414170	0..0	76.49	46.28
Leu	CAG	all_bases	41	392236..392152	0..0	72.70	46.30
Leu	CAG	all_bases	41	392236..392152	0..0	72.70	46.30
Leu	GAG	all_bases	30	1922568..1922484	0..0	64.80	35.40
Leu	GAG	all_bases	30	1922568..1922484	0..0	64.80	35.40
Leu	TAA	all_bases	3	7040..7128	0..0	79.93	45.70
Leu	TAA	all_bases	3	7040..7128	0..0	79.93	45.70
Leu	TAG	all_bases	4	37623..37708	0..0	72.91	45.74
Leu	TAG	all_bases	4	37623..37708	0..0	72.91	45.74
Lys	TTT	all_bases	18	1898153..1898228	0..0	86.05	64.26
Lys	TTT	all_bases	18	1898153..1898228	0..0	86.05	64.26
Met	CAT	all_bases	17	1258060..1258136	0..0	85.01	60.51
Met	CAT	all_bases	17	1258060..1258136	0..0	85.01	60.51
Met	CAT	all_bases	39	840408..840333	0..0	89.90	68.72
Met	CAT	all_bases	39	840408..840333	0..0	89.90	68.72
Met	CAT	all_bases	7	263039..263115	0..0	93.50	70.54
Met	CAT	all_bases	7	263039..263115	0..0	93.50	70.54
Phe	GAA	all_bases	36	1432503..1432428	0..0	89.38	71.20
Phe	GAA	all_bases	36	1432503..1432428	0..0	89.38	71.20
Pro	CGG	all_bases	21	2069234..2069310	0..0	78.58	55.46
Pro	CGG	all_bases	21	2069234..2069310	0..0	78.58	55.46
Pro	GGG	all_bases	38	1036573..1036497	0..0	80.07	58.41
Pro	GGG	all_bases	38	1036573..1036497	0..0	80.07	58.41
Pro	TGG	all_bases	32	1461024..1460948	0..0	83.20	60.50
Pro	TGG	all_bases	32	1461024..1460948	0..0	83.20	60.50
Ser	CGA	all_bases	19	1957547..1957639	0..0	65.57	36.49
Ser	CGA	all_bases	19	1957547..1957639	0..0	65.57	36.49
Ser	GCT	all_bases	27	2314560..2314468	0..0	73.41	43.52
Ser	GCT	all_bases	27	2314560..2314468	0..0	73.41	43.52
Ser	GGA	all_bases	20	1988654..1988744	0..0	73.12	45.32
Ser	GGA	all_bases	20	1988654..1988744	0..0	73.12	45.32
Ser	TGA	all_bases	9	366875..366962	0..0	77.42	36.50
Ser	TGA	all_bases	9	366875..366962	0..0	77.42	36.50
Thr	CGT	all_bases	14	467261..467336	0..0	89.05	64.42
Thr	CGT	all_bases	14	467261..467336	0..0	89.05	64.42
Thr	GGT	all_bases	13	451760..451834	0..0	91.25	65.32
Thr	GGT	all_bases	13	451760..451834	0..0	91.25	65.32
Thr	TGT	all_bases	16	883969..884044	0..0	92.74	75.64
Thr	TGT	all_bases	16	883969..884044	0..0	92.74	75.64
Trp	CCA	all_bases	28	2228091..2228016	0..0	80.36	57.49
Trp	CCA	all_bases	28	2228091..2228016	0..0	80.36	57.49
Tyr	GTA	all_bases	11	451457..451541	0..0	72.08	42.61
Tyr	GTA	all_bases	11	451457..451541	0..0	72.08	42.61
Val	CAC	all_bases	40	429964..429890	0..0	73.46	48.37
Val	CAC	all_bases	40	429964..429890	0..0	73.46	48.37
Val	GAC	all_bases	24	2444876..2444800	0..0	93.06	68.31
Val	GAC	all_bases	24	2444876..2444800	0..0	93.06	68.31
Val	TAC	all_bases	25	2396864..2396789	0..0	93.71	72.19
Val	TAC	all_bases	25	2396864..2396789	0..0	93.71	72.19

tRNA Models

all_bases.trna1 (6774-6849)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (6807-6809)	Score: 88.26
HMM Sc=64.10	Sec struct Sc=24.16
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna2 (6941-7014)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (6973-6975)	Score: 66.41
HMM Sc=47.55	Sec struct Sc=18.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGCGGGGTGGCAGAGTGGTTATGCAGCGGCCTGCAAAGCCGTCTACGCCGGTTCGATTCCGACCCCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....

all_bases.trna3 (7040-7128)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (7074-7076)	Score: 79.93
HMM Sc=45.70	Sec struct Sc=34.23
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCCCGGGTGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGACATTAACGTCCGTGCCGGTTCGATTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna4 (37623-37708)	Length: 86 bp
Type: Leu	Anticodon: TAG at 35-37 (37657-37659)	Score: 72.91
HMM Sc=45.74	Sec struct Sc=27.17
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGAAAGTGGCGGAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGATGaGGTGTGGGGGTTCGAGTCCCCCCTTTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna5 (70772-70848)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (70806-70808)	Score: 100.23
HMM Sc=77.52	Sec struct Sc=22.71
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGGGtCGGTGGTTCAAATCCACCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna6 (70852-70927)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (70885-70887)	Score: 90.96
HMM Sc=78.83	Sec struct Sc=12.13
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

all_bases.trna7 (263039-263115)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (263073-263075)	Score: 93.50
HMM Sc=70.54	Sec struct Sc=22.96
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTcAGAGCAGGGGACTCATAATCCCTTGGtCGTAGGTTCAAGTCCTACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna8 (317975-318048)	Length: 74 bp
Type: Gly	Anticodon: CCC at 33-35 (318007-318009)	Score: 73.37
HMM Sc=55.79	Sec struct Sc=17.58
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTGTAGTTCAATGGCAGAACGGTAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

all_bases.trna9 (366875-366962)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (366909-366911)	Score: 77.42
HMM Sc=36.50	Sec struct Sc=40.92
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *  
Seq: GGAAGCGTGGCCGAGCGGTttAAGGCACTGGTCTTGAAAACCAGCGATGGGCAACCATCCGTGAGTTCGAATCTCACCGCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna10 (414084-414170)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (414118-414120)	Score: 76.49
HMM Sc=46.28	Sec struct Sc=30.21
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCCGGGATGGCGGAATTGGTaGACGCACGGGACTCAAAATCCCGCGATGGTGACATCATGGGGGTTCGATTCCCCCTCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna11 (451457-451541)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (451491-451493)	Score: 72.08
HMM Sc=42.61	Sec struct Sc=29.47
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGGGGTTCCCGAGCGGTcaAAGGGATCAGACTGTAAATCTGACGGCTCTGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<....

all_bases.trna12 (451659-451732)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (451691-451693)	Score: 82.17
HMM Sc=64.72	Sec struct Sc=17.45
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna13 (451760-451834)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (451792-451794)	Score: 91.25
HMM Sc=65.32	Sec struct Sc=25.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCCCATGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGCCAGTTCAATCCTGGCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna14 (467261-467336)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (467294-467296)	Score: 89.05
HMM Sc=64.42	Sec struct Sc=24.63
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGCAGTAACTCAGTTGGTAGAGTAGCTGATTCGTAATCAGCAAGtCGGAGGTTCGACTCCTCTCTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna15 (545460-545535)	Length: 76 bp
Type: Arg	Anticodon: CCT at 34-36 (545493-545495)	Score: 78.20
HMM Sc=46.79	Sec struct Sc=31.41
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCCTGGTAGCTCAGGGGAtAGAGCGACCCCCTCCTAAGGGGTAGGtCGGACGTTCGATTCGTCTCCAGGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna16 (883969-884044)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (884002-884004)	Score: 92.74
HMM Sc=75.64	Sec struct Sc=17.10
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGGCATAGCTCAGTTGGTAGAGCAGCTGATTTGTAATCAGAAGGtCGCGAGTTCAATTCTTGCTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

all_bases.trna17 (1258060-1258136)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1258094-1258096)	Score: 85.01
HMM Sc=60.51	Sec struct Sc=24.50
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

all_bases.trna18 (1898153-1898228)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1898186-1898188)	Score: 86.05
HMM Sc=64.26	Sec struct Sc=21.79
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTCGTTAGCTCAGCCGGTAGAGCAGCGGACTTTTAATCCGTTGGtCGCGCGTTCGAATCGCGCACGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna19 (1957547-1957639)	Length: 93 bp
Type: Ser	Anticodon: CGA at 36-38 (1957582-1957584)	Score: 65.57
HMM Sc=36.49	Sec struct Sc=29.08
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGAGAGGTACCGAAGTGGCcatAACGGCGCTGACTCGAAATCAGATGGTCAGGATTTCCTGGCACGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna20 (1988654-1988744)	Length: 91 bp
Type: Ser	Anticodon: GGA at 35-37 (1988688-1988690)	Score: 73.12
HMM Sc=45.32	Sec struct Sc=27.80
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGAAGTGACCGAGTGGCtgAAGGTGCACGCCTGGAAAGCGTGTGTACGGTAATaCCGTACCGCGGGTTCGAATCCCGCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....

all_bases.trna21 (2069234-2069310)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (2069268-2069270)	Score: 78.58
HMM Sc=55.46	Sec struct Sc=23.12
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGTGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGAGcCGGAGGTTCAAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna22 (2134754-2134829)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (2134787-2134789)	Score: 82.62
HMM Sc=67.58	Sec struct Sc=15.04
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna23 (2134857-2134932)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2134891-2134893)	Score: 61.55
HMM Sc=32.62	Sec struct Sc=28.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTCCCCATCGTCTAGAGGCctAGGACACCACCCTTTCACGGTGGGTACAGGGGTTCGAATCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

all_bases.trna24 (2444876-2444800)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2444842-2444840)	Score: 93.06
HMM Sc=68.31	Sec struct Sc=24.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: AGGCGCGTAGCTCAGCTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna25 (2396864-2396789)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2396831-2396829)	Score: 93.71
HMM Sc=72.19	Sec struct Sc=21.52
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTGCTTAGCTCAGCTGGTAGAGCGTCGCCCTTACAAGGCGAATGtCGGGGGTTCGATCCCCTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna26 (2396719-2396643)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2396685-2396683)	Score: 94.55
HMM Sc=73.65	Sec struct Sc=20.90
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna27 (2314560-2314468)	Length: 93 bp
Type: Ser	Anticodon: GCT at 35-37 (2314526-2314524)	Score: 73.41
HMM Sc=43.52	Sec struct Sc=29.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGAGAGATGGCCGAGTGGTcgAAGGCGCTCCCCTGCTAAGGGAGTATAGGCTCAAAaAGCTTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

all_bases.trna28 (2228091-2228016)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (2228058-2228056)	Score: 80.36
HMM Sc=57.49	Sec struct Sc=22.87
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: AGGCCAGTAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGGGGGTTCGATGCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna29 (1974145-1974071)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1974113-1974111)	Score: 76.23
HMM Sc=51.24	Sec struct Sc=24.99
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TGGGGAGTCGCCAAGTGGTAAGGCACCGGATTTTGATTCCGGCATtCGTAGGTTCGATCCCTACCTCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna30 (1922568-1922484)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (1922534-1922532)	Score: 64.80
HMM Sc=35.40	Sec struct Sc=29.40
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCCGACGTGGTGGAATTGGTaGACACGCCGTCTTGAGGGGGCGGTGGCGAAAGCTGTGCGAGTTCGATTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

all_bases.trna31 (1630188-1630113)	Length: 76 bp
Type: Arg	Anticodon: CCG at 34-36 (1630155-1630153)	Score: 82.17
HMM Sc=53.16	Sec struct Sc=29.01
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGCCCATAGCTCAGTGGAtAGAGTACTGCCCTCCGAAGGCAGGGGtCACACGTTCGAATCGTGTTGGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna32 (1461024-1460948)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1460990-1460988)	Score: 83.20
HMM Sc=60.50	Sec struct Sc=22.70
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGTGTAGCGTAGCCtGGTAGCGCGCCTGGTTTGGGACCAGGATGtCGGGAGTTCAAATCTCTCCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna33 (1460903-1460827)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1460869-1460867)	Score: 89.17
HMM Sc=66.59	Sec struct Sc=22.58
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GTGCCCGTAGCTCAACCGGAtAGAGCACCAGCCTTCTAAGCTGGGGGtTACAGGTTCGATTCCTGTCGGGCACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna34 (1460775-1460700)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1460742-1460740)	Score: 82.63
HMM Sc=61.86	Sec struct Sc=20.77
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTTGtCGTGGGTTCGAGTCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna35 (1432641-1432565)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1432607-1432605)	Score: 86.25
HMM Sc=70.42	Sec struct Sc=15.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna36 (1432503-1432428)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1432470-1432468)	Score: 89.38
HMM Sc=71.20	Sec struct Sc=18.18
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCCAAGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTTGTGtCGGTGGTTCGATTCCGCCCTTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna37 (1258761-1258686)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (1258728-1258726)	Score: 85.92
HMM Sc=62.24	Sec struct Sc=23.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGtCCCAGGTTCGAGCCCTGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

all_bases.trna38 (1036573-1036497)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (1036539-1036537)	Score: 80.07
HMM Sc=58.41	Sec struct Sc=21.66
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGTACTTGCATGGGGTGCAAGTGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna39 (840408-840333)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (840375-840373)	Score: 89.90
HMM Sc=68.72	Sec struct Sc=21.18
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCGAATTAGCTCAGTGGTtAGAGCAGCGGAATCATAATCCGTTGGtCCGGGGTTCAAATCCCTGATTCGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna40 (429964-429890)	Length: 75 bp
Type: Val	Anticodon: CAC at 33-35 (429932-429930)	Score: 73.46
HMM Sc=48.37	Sec struct Sc=25.09
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGCGGTTAACTCAGCGGTAGAGTGTCACCTTCACACGGTGGAAGtCATTGGTTCGATTCCAGTACCGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

all_bases.trna41 (392236-392152)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (392202-392200)	Score: 72.70
HMM Sc=46.30	Sec struct Sc=26.40
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCCCAGATGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCCTTCGGGTGTGGAGGTTCGAGTCCTCTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....

Sequence		tRNA Bounds	tRNA	Anti	Intron Bounds	Cove	HMM	2'Str
Name     	tRNA #	Begin	End	Type	Codon	Begin	End	Score	Score	Score

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