Cell Motility and Secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type uncharacterized transport system involved in gliding motility auxiliary component	N	AL954747	NE2551	COG3225	68	1e-12
Chemotaxis protein	N	AL954747	NE1924	COG3143	116	1e-27
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE0049	COG0643	48	3e-06
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE0377	COG0643	65	2e-11
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE1006	COG0643	37	6e-04
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE1250	COG0643	353	6e-98
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE1408	COG0643	48	2e-06
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE1865	COG0643	43	1e-05
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE1866	COG0643	612	1.0e-176
Chemotaxis protein histidine kinase and related kinase	N	AL954747	NE2082	COG0643	61	1e-10
Chemotaxis protein; stimulates methylation of MCP protein	N	AL954747	NE1860	COG1871	167	6e-43
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0017	COG2201	38	0.002
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0344	COG2201	58	7e-10
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0514	COG2201	51	5e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0566	COG2201	66	6e-12
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0667	COG2201	50	1e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE0937	COG2201	46	3e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1007	COG2201	66	5e-13
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1124	COG2201	48	1e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1250	COG2201	70	1e-12
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1313	COG2201	41	6e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1409	COG2201	52	4e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1700	COG2201	39	0.002
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1836	COG2201	68	3e-13
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1859	COG2201	395	1.0e-111
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1923	COG2201	60	5e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE1975	COG2201	64	2e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE2081	COG2201	50	3e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	N	AL954747	NE2131	COG2201	50	2e-07
Chemotaxis signal transduction protein	N	AL954747	NE1006	COG0835	72	3e-14
Chemotaxis signal transduction protein	N	AL954747	NE1397	COG0835	81	2e-16
Chemotaxis signal transduction protein	N	AL954747	NE1865	COG0835	142	2e-35
Chemotaxis signal transduction protein	N	AL954747	NE1866	COG0835	40	0.001
Flagellar basal body rod protein	N	AL954747	NE0302	COG4787	33	0.007
Flagellar basal body rod protein	N	AL954747	NE0302	COG4786	34	0.006
Flagellar basal body rod protein	N	AL954747	NE0303	COG4786	42	2e-05
Flagellar basal body rod protein	N	AL954747	NE0305	COG4787	57	2e-09
Flagellar basal body rod protein	N	AL954747	NE0305	COG4786	111	1e-25
Flagellar basal body rod protein	N	AL954747	NE0306	COG4787	266	1e-72
Flagellar basal body rod protein	N	AL954747	NE0306	COG4786	156	1e-39
Flagellar basal body rod protein	N	AL954747	NE0307	COG4787	125	5e-30
Flagellar basal body rod protein	N	AL954747	NE0307	COG4786	309	1e-85
Flagellar basal body rod protein	N	AL954747	NE0311	COG4786	39	5e-04
Flagellar biogenesis protein	N	AL954747	NE0462	COG3190	78	3e-16
Flagellar biosynthesis/type III secretory pathway chaperone	N	AL954747	NE2477	COG3418	35	0.002
Flagellar hook-length control protein	N	AL954747	NE2088	COG3144	82	5e-17

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar basal body-associated protein	N	AL954747	NE0465	COG1580	85	3e-18
Flagellar basal body L-ring protein	N	AL954747	NE0308	COG2063	196	1e-51
Flagellar basal body P-ring biosynthesis protein	N	AL954747	NE0301	COG1261	130	1e-31
Flagellar basal-body P-ring protein	N	AL954747	NE0309	COG1706	427	1.0e-121
Flagellar basal body protein	N	AL954747	NE0302	COG1815	128	1e-31
Flagellar basal body protein	N	AL954747	NE0303	COG1815	37	6e-04
Flagellar basal body protein	N	AL954747	NE0305	COG1815	36	0.005
Flagellar basal body protein	N	AL954747	NE0307	COG1815	40	1e-04
Flagellar basal body rod protein	N	AL954747	NE0303	COG1558	156	4e-40
Flagellar basal body rod protein	N	AL954747	NE0307	COG1558	49	3e-07
Flagellar biosynthesis chaperone	N	AL954747	NE2087	COG2882	60	7e-11
Flagellar biosynthesis pathway component FlhA	N	AL954747	NE2488	COG1298	853	0.0
Flagellar biosynthesis pathway component FlhB	N	AL954747	NE2078	COG1377	76	7e-16
Flagellar biosynthesis pathway component FlhB	N	AL954747	NE2487	COG1377	392	1.0e-110
Flagellar biosynthesis pathway component FliP	N	AL954747	NE0461	COG1338	283	1e-77
Flagellar biosynthesis pathway component FliQ	N	AL954747	NE0460	COG1987	83	4e-18
Flagellar biosynthesis pathway component FliR	N	AL954747	NE0459	COG1684	168	3e-43
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE0204	COG1157	198	6e-52
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE0206	COG1157	245	3e-66
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE0827	COG1157	34	0.008
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE0976	COG1157	35	0.009
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE1035	COG1157	115	8e-27
Flagellar biosynthesis/type III secretory pathway ATPase	N	AL954747	NE2086	COG1157	580	1.0e-167
Flagellar biosynthesis/type III secretory pathway lipoprotein	N	AL954747	NE2083	COG1766	400	1.0e-112
Flagellar biosynthesis/type III secretory pathway protein	N	AL954747	NE0492	COG1317	41	1e-04
Flagellar biosynthesis/type III secretory pathway protein	N	AL954747	NE1223	COG1317	42	6e-05
Flagellar biosynthesis/type III secretory pathway protein	N	AL954747	NE1302	COG1317	40	2e-04
Flagellar biosynthesis/type III secretory pathway protein	N	AL954747	NE2085	COG1317	102	2e-23
Flagellar capping protein	N	AL954747	NE1595	COG1345	227	1e-60
Flagellar GTP-binding protein	N	AL954747	NE1257	COG1419	38	0.002
Flagellar GTP-binding protein	N	AL954747	NE1415	COG1419	79	4e-16
Flagellar GTP-binding protein	N	AL954747	NE1460	COG1419	95	1e-20
Flagellar GTP-binding protein	N	AL954747	NE2379	COG1419	40	2e-04
Flagellar GTP-binding protein	N	AL954747	NE2402	COG1419	40	0.001
Flagellar GTP-binding protein	N	AL954747	NE2489	COG1419	281	5e-77
Flagellar hook-associated protein	N	AL954747	NE0303	COG1256	33	0.008
Flagellar hook-associated protein	N	AL954747	NE0305	COG1256	40	4e-04
Flagellar hook-associated protein	N	AL954747	NE0307	COG1256	40	2e-04
Flagellar hook-associated protein	N	AL954747	NE0311	COG1256	234	1e-62
Flagellar hook-basal body protein	N	AL954747	NE2080	COG1677	67	3e-13
Flagellar hook capping protein	N	AL954747	NE0304	COG1843	141	5e-35
Flagellar hook protein FlgE	N	AL954747	NE0305	COG1749	309	2e-85
Flagellar hook protein FlgE	N	AL954747	NE0306	COG1749	80	2e-16
Flagellar hook protein FlgE	N	AL954747	NE0307	COG1749	107	6e-25
Flagellar hook protein FlgE	N	AL954747	NE0311	COG1749	41	1e-04
Flagellar motor component	N	AL954747	NE0046	COG1291	263	9e-72
Flagellar motor component	N	AL954747	NE0215	COG1291	39	3e-04
Flagellar motor component	N	AL954747	NE1171	COG1291	37	0.001
Flagellar motor protein	N	AL954747	NE0045	COG1360	169	2e-43
Flagellar motor protein	N	AL954747	NE0219	COG1360	58	4e-10
Flagellar motor protein	N	AL954747	NE1025	COG1360	107	8e-25
Flagellar motor protein	N	AL954747	NE2548	COG1360	56	3e-09
Flagellar motor switch protein	N	AL954747	NE0463	COG1868	45	2e-06
Flagellar motor switch protein	N	AL954747	NE0464	COG1868	307	1e-84
Flagellar motor switch protein	N	AL954747	NE2084	COG1536	289	3e-79
Flagellar motor switch/type III secretory pathway protein	N	AL954747	NE0463	COG1886	99	2e-22
Flagellar motor switch/type III secretory pathway protein	N	AL954747	NE0464	COG1886	35	0.007
Flagellin and related hook-associated protein	N	AL954747	NE0312	COG1344	108	6e-25
Flagellin and related hook-associated protein	N	AL954747	NE1593	COG1344	129	2e-31
Flagellin-specific chaperone FliS	N	AL954747	NE1596	COG1516	110	7e-26
Muramidase (flagellum-specific)	N	AL954747	NE0310	COG1705	164	1e-41
Predicted ATPase involved in biogenesis of flagella	N	AL954747	NE1808	COG2874	47	3e-06
Predicted ATPase involved in biogenesis of flagella	N	AL954747	NE1932	COG2874	36	0.004
Uncharacterized flagellar protein FlaG	N	AL954747	NE1594	COG1334	65	1e-12

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Methyl-accepting chemotaxis protein	N	AL954747	NE0049	COG0840	46	1e-05
Methyl-accepting chemotaxis protein	N	AL954747	NE0515	COG0840	57	4e-09
Methyl-accepting chemotaxis protein	N	AL954747	NE0666	COG0840	40	3e-04
Methyl-accepting chemotaxis protein	N	AL954747	NE1154	COG0840	48	1e-06
Methyl-accepting chemotaxis protein	N	AL954747	NE1251	COG0840	152	8e-38
Methyl-accepting chemotaxis protein	N	AL954747	NE1863	COG0840	216	8e-57
Methyl-accepting chemotaxis protein	N	AL954747	NE1864	COG0840	195	1e-50
Methyl-accepting chemotaxis protein	N	AL954747	NE1909	COG0840	44	4e-05
Methyl-accepting chemotaxis protein	N	AL954747	NE1974	COG0840	49	1e-06
Methylase of chemotaxis methyl-accepting protein	N	AL954747	NE1861	COG1352	259	1e-70
Methylase of chemotaxis methyl-accepting protein	N	AL954747	NE2401	COG1352	40	7e-04
Negative regulator of flagellin synthesis (anti-sigma28 factor)	N	AL954747	NE2478	COG2747	46	7e-07
Rod binding protein	N	AL954747	NE0310	COG3951	97	2e-21
Tfp pilus assembly protein ATPase PilM	N	AL954747	NE0996	COG4972	68	2e-12
Tfp pilus assembly protein ATPase PilM	N	AL954747	NE2070	COG4972	36	0.004
Tfp pilus assembly protein ATPase PilM	N	AL954747	NE2316	COG4972	312	2e-86
Tfp pilus assembly protein ATPase PilU	N	AL954747	NE0964	COG5008	562	1.0e-161
Tfp pilus assembly protein ATPase PilU	N	AL954747	NE0965	COG5008	346	1e-96
Tfp pilus assembly protein ATPase PilU	N	AL954747	NE1257	COG5008	123	3e-29
Tfp pilus assembly protein ATPase PilU	N	AL954747	NE1609	COG5008	105	1e-23
Tfp pilus assembly protein ATPase PilU	N	AL954747	NE2290	COG5008	108	1e-24
Tfp pilus assembly protein FimT	N	AL954747	NE1308	COG4970	47	7e-07
Tfp pilus assembly protein FimT	N	AL954747	NE1602	COG4970	45	2e-06
Tfp pilus assembly protein FimT	N	AL954747	NE1603	COG4970	50	6e-08
Tfp pilus assembly protein FimT	N	AL954747	NE1611	COG4970	44	6e-06
Tfp pilus assembly protein FimT	N	AL954747	NE1746	COG4970	45	3e-06
Tfp pilus assembly protein FimT	N	AL954747	NE1751	COG4970	106	9e-25
Tfp pilus assembly protein FimV	N	AL954747	NE0690	COG3170	140	4e-34
Tfp pilus assembly protein FimV	N	AL954747	NE0791	COG3170	38	0.002
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1308	COG4969	75	1e-15
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1602	COG4969	45	2e-06
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1603	COG4969	47	6e-07
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1611	COG4969	49	2e-07
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1746	COG4969	53	9e-09
Tfp pilus assembly protein major pilin PilA	N	AL954747	NE1751	COG4969	46	2e-06
Tfp pilus assembly protein PilE	N	AL954747	NE1253	COG4968	40	5e-05
Tfp pilus assembly protein PilE	N	AL954747	NE1308	COG4968	62	2e-11
Tfp pilus assembly protein PilE	N	AL954747	NE1602	COG4968	59	1e-10
Tfp pilus assembly protein PilE	N	AL954747	NE1603	COG4968	54	4e-09
Tfp pilus assembly protein PilE	N	AL954747	NE1611	COG4968	54	5e-09
Tfp pilus assembly protein PilE	N	AL954747	NE1746	COG4968	108	1e-25
Tfp pilus assembly protein PilE	N	AL954747	NE1751	COG4968	50	8e-08
Tfp pilus assembly protein PilF	N	AL954747	NE0146	COG3063	155	2e-39
Tfp pilus assembly protein PilF	N	AL954747	NE1298	COG3063	59	2e-09
Tfp pilus assembly protein PilF	N	AL954747	NE1444	COG3063	59	1e-09
Tfp pilus assembly protein PilF	N	AL954747	NE1600	COG3063	41	2e-04
Tfp pilus assembly protein PilF	N	AL954747	NE2159	COG3063	43	1e-05
Tfp pilus assembly protein PilN	N	AL954747	NE1607	COG3166	38	5e-04
Tfp pilus assembly protein PilN	N	AL954747	NE2315	COG3166	118	3e-28
Tfp pilus assembly protein PilO	N	AL954747	NE2314	COG3167	177	6e-46
Tfp pilus assembly protein PilP	N	AL954747	NE2313	COG3168	124	3e-30
Tfp pilus assembly protein pilus retraction ATPase PilT	N	AL954747	NE0964	COG2805	380	1.0e-107
Tfp pilus assembly protein pilus retraction ATPase PilT	N	AL954747	NE0965	COG2805	538	1.0e-154
Tfp pilus assembly protein pilus retraction ATPase PilT	N	AL954747	NE1257	COG2805	185	8e-48
Tfp pilus assembly protein pilus retraction ATPase PilT	N	AL954747	NE1609	COG2805	157	2e-39
Tfp pilus assembly protein pilus retraction ATPase PilT	N	AL954747	NE2290	COG2805	156	5e-39
Tfp pilus assembly protein PilV	N	AL954747	NE1750	COG4967	65	3e-12
Tfp pilus assembly protein PilW	N	AL954747	NE1602	COG4966	39	2e-04
Tfp pilus assembly protein PilW	N	AL954747	NE1749	COG4966	84	2e-17
Tfp pilus assembly protein PilX	N	AL954747	NE1308	COG4726	33	0.005
Tfp pilus assembly protein PilX	N	AL954747	NE1602	COG4726	34	0.004
Tfp pilus assembly protein PilX	N	AL954747	NE1748	COG4726	101	9e-23
Tfp pilus assembly protein tip-associated adhesin PilY1	N	AL954747	NE1747	COG3419	404	1.0e-113
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE0964	COG2804	156	3e-39
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE0965	COG2804	178	6e-46
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE1257	COG2804	479	1.0e-136
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE1609	COG2804	486	1.0e-138
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE2290	COG2804	426	1.0e-120
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	N	AL954747	NE2402	COG2804	37	0.004
Type II secretory pathway component PulD	N	AL954747	NE0558	COG1450	35	0.006
Type II secretory pathway component PulD	N	AL954747	NE0705	COG1450	253	5e-68
Type II secretory pathway component PulD	N	AL954747	NE1088	COG1450	36	0.009
Type II secretory pathway component PulD	N	AL954747	NE1604	COG1450	138	1e-33
Type II secretory pathway component PulD	N	AL954747	NE2312	COG1450	153	3e-38
Type II secretory pathway component PulF	N	AL954747	NE0596	COG1459	384	1.0e-108
Type II secretory pathway component PulF	N	AL954747	NE1256	COG1459	236	3e-63
Type II secretory pathway component PulF	N	AL954747	NE1610	COG1459	287	7e-79
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	N	AL954747	NE0597	COG1989	142	3e-35
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1252	COG2165	44	1e-05
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1253	COG2165	45	2e-06
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1255	COG2165	72	1e-14
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1308	COG2165	50	7e-08
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1601	COG2165	50	1e-07
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1602	COG2165	65	2e-12
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1603	COG2165	72	2e-14
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1611	COG2165	96	1e-21
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1746	COG2165	54	5e-09
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1749	COG2165	37	0.002
Type II secretory pathway pseudopilin PulG	N	AL954747	NE1751	COG2165	47	8e-07
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE0720	COG0630	37	0.004
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE0964	COG0630	78	1e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE0965	COG0630	76	3e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE1257	COG0630	88	2e-18
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE1609	COG0630	91	2e-19
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE2290	COG0630	75	2e-14
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	N	AL954747	NE2528	COG0630	37	0.007

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