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DNA Replication, Recombination and Repair

COG Name Group Contig Gene COG ID Score Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L AL954747 NE0056 COG0122 36 0.005
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L AL954747 NE0981 COG0122 167 4e-43
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L AL954747 NE2223 COG0122 53 2e-08
3-methyladenine DNA glycosylase L AL954747 NE0447 COG2818 95 5e-21
5'-3' exonuclease (including N-terminal domain of PolI) L AL954747 NE1468 COG0258 269 6e-73
Adenine specific DNA methylase Mod L AL954747 NE2309 COG2189 174 1e-44
A/G-specific DNA glycosylase L AL954747 NE0056 COG1194 359 1.0e-100
A/G-specific DNA glycosylase L AL954747 NE2223 COG1194 91 6e-20
ATPase involved in DNA repair L AL954747 NE0107 COG0419 51 8e-08
ATPase involved in DNA repair L AL954747 NE0159 COG0419 41 3e-04
ATPase involved in DNA repair L AL954747 NE0376 COG0419 44 2e-05
ATPase involved in DNA repair L AL954747 NE0477 COG0419 38 0.001
ATPase involved in DNA repair L AL954747 NE0576 COG0419 45 7e-06
ATPase involved in DNA repair L AL954747 NE0588 COG0497 40 5e-04
ATPase involved in DNA repair L AL954747 NE0588 COG0419 42 1e-04
ATPase involved in DNA repair L AL954747 NE0734 COG0419 43 9e-05
ATPase involved in DNA repair L AL954747 NE0764 COG0419 45 5e-06
ATPase involved in DNA repair L AL954747 NE0827 COG0419 50 1e-07
ATPase involved in DNA repair L AL954747 NE0919 COG0419 40 5e-04
ATPase involved in DNA repair L AL954747 NE1001 COG0419 39 3e-04
ATPase involved in DNA repair L AL954747 NE1031 COG0419 43 3e-05
ATPase involved in DNA repair L AL954747 NE1056 COG0419 46 2e-06
ATPase involved in DNA repair L AL954747 NE1081 COG0419 57 5e-09
ATPase involved in DNA repair L AL954747 NE1117 COG0419 37 0.009
ATPase involved in DNA repair L AL954747 NE1195 COG0419 40 2e-04
ATPase involved in DNA repair L AL954747 NE1209 COG0419 45 2e-05
ATPase involved in DNA repair L AL954747 NE1392 COG0419 139 1e-33
ATPase involved in DNA repair L AL954747 NE1404 COG0419 47 1e-06
ATPase involved in DNA repair L AL954747 NE1414 COG0419 57 1e-09
ATPase involved in DNA repair L AL954747 NE1454 COG0419 53 2e-08
ATPase involved in DNA repair L AL954747 NE1479 COG0497 526 1.0e-150
ATPase involved in DNA repair L AL954747 NE1479 COG0419 43 5e-05
ATPase involved in DNA repair L AL954747 NE1538 COG0419 44 2e-05
ATPase involved in DNA repair L AL954747 NE1613 COG0419 49 1e-06
ATPase involved in DNA repair L AL954747 NE1737 COG0419 37 0.001
ATPase involved in DNA repair L AL954747 NE1781 COG0419 38 9e-04
ATPase involved in DNA repair L AL954747 NE1784 COG0419 36 0.009
ATPase involved in DNA repair L AL954747 NE1806 COG0419 45 1e-05
ATPase involved in DNA repair L AL954747 NE1870 COG0419 35 0.006
ATPase involved in DNA repair L AL954747 NE1899 COG0419 52 4e-08
ATPase involved in DNA repair L AL954747 NE1947 COG0419 57 7e-09
ATPase involved in DNA repair L AL954747 NE2244 COG0419 38 4e-04
ATPase involved in DNA repair L AL954747 NE2284 COG0497 53 1e-07
ATPase involved in DNA repair L AL954747 NE2284 COG0419 80 1e-15
ATPase involved in DNA repair L AL954747 NE2310 COG0497 39 0.001
ATPase involved in DNA repair L AL954747 NE2310 COG0419 55 2e-08
ATPase involved in DNA repair L AL954747 NE2379 COG0419 40 2e-04
ATPase involved in DNA repair L AL954747 NE2384 COG0419 45 4e-06
ATPase involved in DNA repair L AL954747 NE2452 COG0419 44 3e-05
ATPase involved in DNA repair L AL954747 NE2455 COG0419 56 1e-08
ATPase involved in DNA repair L AL954747 NE2480 COG0419 38 0.003
ATPase involved in DNA repair L AL954747 NE2549 COG0419 37 0.001
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0032 COG2256 44 2e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0033 COG2256 50 6e-07
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0213 COG2256 91 2e-19
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0433 COG2256 95 1e-20
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0474 COG2256 36 0.006
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0528 COG2256 53 8e-08
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE0906 COG2256 54 2e-08
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE1053 COG2256 574 1.0e-165
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE1278 COG2256 44 3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE1733 COG2256 57 5e-09
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE2261 COG2256 43 4e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L AL954747 NE2402 COG2256 44 4e-05
ATP-dependent DNA ligase homolog of eukaryotic ligase III L AL954747 NE1884 COG1423 55 6e-09
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L AL954747 NE0093 COG1074 92 3e-19
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L AL954747 NE1473 COG1074 199 4e-52
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L AL954747 NE2166 COG1074 289 1e-78
ATP-dependent nuclease subunit B L AL954747 NE1473 COG3857 44 4e-05
ATP-dependent nuclease subunit B L AL954747 NE2178 COG3857 74 5e-14
Bacterial nucleoid DNA-binding protein L AL954747 NE0952 COG0776 110 2e-26
Bacterial nucleoid DNA-binding protein L AL954747 NE1961 COG0776 107 2e-25
Bacterial nucleoid DNA-binding protein L AL954747 NE2207 COG0776 109 4e-26

BASAL REPLICATION MACHINERY

COG Name Group Contig Gene COG ID Score Evalue
ATPase involved in DNA replication L AL954747 NE0433 COG0470 44 3e-05
ATPase involved in DNA replication L AL954747 NE2180 COG0470 49 5e-07
ATPase involved in DNA replication initiation L AL954747 NE0001 COG0593 424 1.0e-120
ATPase involved in DNA replication initiation L AL954747 NE0098 COG0593 131 3e-32
ATPase involved in DNA replication initiation L AL954747 NE0213 COG0593 44 2e-05
ATPase involved in DNA replication initiation L AL954747 NE0528 COG0593 44 2e-05
ATPase involved in DNA replication initiation L AL954747 NE0732 COG0593 36 0.006
ATPase involved in DNA replication initiation L AL954747 NE1053 COG0593 50 3e-07
DNA polymerase I - 3'-5' exonuclease and polymerase domains L AL954747 NE1468 COG0749 758 0.0
DNA polymerase II small subunit/DNA polymerase delta subunit B L AL954747 NE1390 COG1311 37 0.003
DNA primase L AL954747 NE0228 COG0358 411 1.0e-116
DNA replication protein L AL954747 NE0001 COG1484 49 8e-07
DNA replication protein L AL954747 NE0098 COG1484 35 0.005
DNA replication protein L AL954747 NE1278 COG1484 36 0.009
NAD-dependent DNA ligase (contains BRCT domain type II) L AL954747 NE0940 COG0272 33 0.006
NAD-dependent DNA ligase (contains BRCT domain type II) L AL954747 NE1464 COG0272 39 2e-04
NAD-dependent DNA ligase (contains BRCT domain type II) L AL954747 NE1753 COG0272 920 0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE0008 COG1198 75 3e-14
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE0785 COG1198 58 3e-09
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE0834 COG1198 37 0.005
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE1505 COG1198 715 0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE1850 COG1198 60 4e-10
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE1932 COG1198 36 0.006
Primosomal protein N' (replication factor Y) - superfamily II helicase L AL954747 NE2499 COG1198 38 0.004
Replicative DNA helicase L AL954747 NE0194 COG0305 538 1.0e-154
Replicative DNA helicase L AL954747 NE1808 COG0305 40 3e-04
Ribonuclease HI L AL954747 NE0140 COG0328 175 1e-45
Ribonuclease HII L AL954747 NE1707 COG0164 213 8e-57
Ribonuclease HIII L AL954747 NE1707 COG1039 49 4e-07
Single-stranded DNA-binding protein L AL954747 NE2453 COG0629 147 5e-37
Topoisomerase IA L AL954747 NE1966 COG0550 454 1.0e-129
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L AL954747 NE0332 COG0188 1056 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L AL954747 NE2402 COG0188 40 6e-04
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L AL954747 NE0003 COG0187 864 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L AL954747 NE0666 COG0187 41 2e-04
COG Name Group Contig Gene COG ID Score Evalue
Cdc6-related protein AAA superfamily ATPase L AL954747 NE0213 COG1474 41 2e-04
Cdc6-related protein AAA superfamily ATPase L AL954747 NE0528 COG1474 39 0.001
Cdc6-related protein AAA superfamily ATPase L AL954747 NE0906 COG1474 40 4e-04
Cdc6-related protein AAA superfamily ATPase L AL954747 NE1053 COG1474 47 4e-06
Cdc6-related protein AAA superfamily ATPase L AL954747 NE1801 COG1474 43 2e-05
Cdc6-related protein AAA superfamily ATPase L AL954747 NE2214 COG1474 37 0.002
DNA mismatch repair enzyme (predicted ATPase) L AL954747 NE1314 COG0323 36 0.005
DNA mismatch repair enzyme (predicted ATPase) L AL954747 NE1742 COG0323 612 1.0e-176
DNA modification methylase L AL954747 NE2309 COG0863 55 1e-08
DNA or RNA helicase of superfamily II L AL954747 NE0008 COG1061 67 5e-12
DNA or RNA helicase of superfamily II L AL954747 NE0093 COG1061 49 4e-06
DNA or RNA helicase of superfamily II L AL954747 NE0382 COG1061 46 1e-05
DNA or RNA helicase of superfamily II L AL954747 NE0785 COG1061 57 4e-09
DNA or RNA helicase of superfamily II L AL954747 NE0834 COG1061 49 1e-06
DNA or RNA helicase of superfamily II L AL954747 NE1505 COG1061 40 4e-04
DNA or RNA helicase of superfamily II L AL954747 NE1807 COG1061 71 2e-13
DNA or RNA helicase of superfamily II L AL954747 NE1850 COG1061 67 6e-12
DNA or RNA helicase of superfamily II L AL954747 NE2040 COG1061 67 4e-12
DNA or RNA helicase of superfamily II L AL954747 NE2306 COG1061 58 3e-09
DNA or RNA helicase of superfamily II L AL954747 NE2311 COG1061 56 1e-08
DNA or RNA helicase of superfamily II L AL954747 NE2499 COG1061 119 8e-28
DNA or RNA helicase of superfamily II L AL954747 NE2520 COG1061 69 8e-13
DNA or RNA helicase of superfamily II L AL954747 NE2527 COG1061 60 9e-10
DNA or RNA helicase of superfamily II L AL954747 NE2564 COG1061 45 1e-05

DNA POLYMERASE III SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA polymerase III alpha subunit L AL954747 NE1724 COG0587 55 8e-09
DNA polymerase III alpha subunit L AL954747 NE1978 COG0587 1230 0.0
DNA polymerase III alpha subunit (gram-positive type) L AL954747 NE0141 COG2176 119 1e-28
DNA polymerase III alpha subunit (gram-positive type) L AL954747 NE1724 COG2176 47 2e-06
DNA polymerase III alpha subunit (gram-positive type) L AL954747 NE1978 COG2176 167 5e-42
DNA polymerase III chi subunit L AL954747 NE0442 COG2927 79 8e-17
DNA polymerase III delta subunit L AL954747 NE1137 COG1466 188 7e-49
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L AL954747 NE0075 COG0847 40 1e-04
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L AL954747 NE0141 COG0847 168 3e-43
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L AL954747 NE0671 COG0847 44 3e-05
DNA polymerase III gamma/tau subunits L AL954747 NE0213 COG2812 45 6e-06
DNA polymerase III gamma/tau subunits L AL954747 NE0433 COG2812 436 1.0e-123
DNA polymerase III gamma/tau subunits L AL954747 NE1053 COG2812 95 1e-20
DNA polymerase III gamma/tau subunits L AL954747 NE2180 COG2812 109 4e-25
DNA polymerase sliding clamp subunit (PCNA homolog) L AL954747 NE0002 COG0592 252 4e-68
COG Name Group Contig Gene COG ID Score Evalue
DNA recombination-dependent growth factor C L AL954747 NE0507 COG2974 240 1e-64
DNA recombination-dependent growth factor C L AL954747 NE0511 COG2974 43 3e-06
DNA repair exonuclease L AL954747 NE1390 COG0420 163 3e-41
DNA repair protein L AL954747 NE1464 COG2003 272 1e-74
DNA topoisomerase VI subunit B L AL954747 NE0343 COG1389 36 0.005
DNA topoisomerase VI subunit B L AL954747 NE0515 COG1389 38 0.002
DNA topoisomerase VI subunit B L AL954747 NE0666 COG1389 36 0.006
DNA topoisomerase VI subunit B L AL954747 NE1742 COG1389 36 0.008
DNA uptake protein and related DNA-binding protein L AL954747 NE0940 COG1555 79 1e-16
DNA uptake protein and related DNA-binding protein L AL954747 NE2197 COG1555 57 5e-09
ERCC4-like helicase L AL954747 NE0008 COG1111 46 1e-05
ERCC4-like helicase L AL954747 NE0093 COG1111 56 1e-08
ERCC4-like helicase L AL954747 NE0785 COG1111 63 8e-11
ERCC4-like helicase L AL954747 NE1807 COG1111 60 4e-10
ERCC4-like helicase L AL954747 NE1850 COG1111 48 2e-06
ERCC4-like helicase L AL954747 NE2040 COG1111 65 1e-11
ERCC4-like helicase L AL954747 NE2311 COG1111 43 1e-04
ERCC4-like helicase L AL954747 NE2499 COG1111 51 3e-07
ERCC4-type nuclease L AL954747 NE0933 COG1948 54 3e-08
ERCC4-type nuclease L AL954747 NE1464 COG1948 43 3e-05
Excinuclease ATPase subunit L AL954747 NE0054 COG0178 37 0.003
Excinuclease ATPase subunit L AL954747 NE0063 COG0178 58 6e-10
Excinuclease ATPase subunit L AL954747 NE0107 COG0178 52 3e-08
Excinuclease ATPase subunit L AL954747 NE0159 COG0178 43 6e-05
Excinuclease ATPase subunit L AL954747 NE0376 COG0178 55 1e-08
Excinuclease ATPase subunit L AL954747 NE0477 COG0178 37 0.004
Excinuclease ATPase subunit L AL954747 NE0576 COG0178 54 2e-08
Excinuclease ATPase subunit L AL954747 NE0720 COG0178 57 5e-09
Excinuclease ATPase subunit L AL954747 NE0734 COG0178 43 8e-05
Excinuclease ATPase subunit L AL954747 NE0764 COG0178 41 5e-05
Excinuclease ATPase subunit L AL954747 NE0827 COG0178 42 5e-05
Excinuclease ATPase subunit L AL954747 NE0919 COG0178 49 2e-06
Excinuclease ATPase subunit L AL954747 NE0976 COG0178 37 0.004
Excinuclease ATPase subunit L AL954747 NE1001 COG0178 46 3e-06
Excinuclease ATPase subunit L AL954747 NE1031 COG0178 36 0.006
Excinuclease ATPase subunit L AL954747 NE1056 COG0178 47 1e-06
Excinuclease ATPase subunit L AL954747 NE1081 COG0178 60 5e-10
Excinuclease ATPase subunit L AL954747 NE1117 COG0178 52 3e-07
Excinuclease ATPase subunit L AL954747 NE1195 COG0178 39 3e-04
Excinuclease ATPase subunit L AL954747 NE1209 COG0178 38 0.002
Excinuclease ATPase subunit L AL954747 NE1404 COG0178 37 0.001
Excinuclease ATPase subunit L AL954747 NE1414 COG0178 41 1e-04
Excinuclease ATPase subunit L AL954747 NE1454 COG0178 42 5e-05
Excinuclease ATPase subunit L AL954747 NE1613 COG0178 47 4e-06
Excinuclease ATPase subunit L AL954747 NE1737 COG0178 46 4e-06
Excinuclease ATPase subunit L AL954747 NE1784 COG0178 47 4e-06
Excinuclease ATPase subunit L AL954747 NE1806 COG0178 46 6e-06
Excinuclease ATPase subunit L AL954747 NE1899 COG0178 43 2e-05
Excinuclease ATPase subunit L AL954747 NE2244 COG0178 50 1e-07
Excinuclease ATPase subunit L AL954747 NE2379 COG0178 38 9e-04
Excinuclease ATPase subunit L AL954747 NE2384 COG0178 61 1e-10
Excinuclease ATPase subunit L AL954747 NE2452 COG0178 56 1e-08
Excinuclease ATPase subunit L AL954747 NE2455 COG0178 1547 0.0
Excinuclease ATPase subunit L AL954747 NE2480 COG0178 46 1e-05
Excinuclease ATPase subunit L AL954747 NE2549 COG0178 38 8e-04
Exonuclease I L AL954747 NE0075 COG2925 43 2e-05
Exonuclease I L AL954747 NE0671 COG2925 549 1.0e-157
Exonuclease III L AL954747 NE0023 COG0708 298 2e-82
Exonuclease III L AL954747 NE2192 COG0708 280 8e-77
Exonuclease VII large subunit L AL954747 NE1172 COG1570 459 1.0e-130
Exonuclease VII small subunit L AL954747 NE1159 COG1722 50 5e-08
Factor for inversion stimulation Fis transcriptional activator L AL954747 NE0875 COG2901 83 3e-18
Factor for inversion stimulation Fis transcriptional activator L AL954747 NE1124 COG2901 36 0.005
Formamidopyrimidine-DNA glycosylase L AL954747 NE2552 COG0266 349 2e-97
G:T/U mismatch-specific DNA glycosylase L AL954747 NE1560 COG3663 99 2e-22
Helicase subunit of the DNA excision repair complex L AL954747 NE0008 COG0556 67 8e-12
Helicase subunit of the DNA excision repair complex L AL954747 NE0093 COG0556 45 5e-05
Helicase subunit of the DNA excision repair complex L AL954747 NE0785 COG0556 1076 0.0
Helicase subunit of the DNA excision repair complex L AL954747 NE0933 COG0556 43 7e-05
Helicase subunit of the DNA excision repair complex L AL954747 NE1505 COG0556 48 2e-06
Helicase subunit of the DNA excision repair complex L AL954747 NE1807 COG0556 53 5e-08
Helicase subunit of the DNA excision repair complex L AL954747 NE1850 COG0556 44 5e-05
Helicase subunit of the DNA excision repair complex L AL954747 NE2040 COG0556 39 8e-04
Helicase subunit of the DNA excision repair complex L AL954747 NE2499 COG0556 37 0.006
Holliday junction resolvasome DNA-binding subunit L AL954747 NE0212 COG0632 199 1e-52
Holliday junction resolvasome endonuclease subunit L AL954747 NE0211 COG0817 198 2e-52
Holliday junction resolvasome helicase subunit L AL954747 NE0001 COG2255 38 0.001
Holliday junction resolvasome helicase subunit L AL954747 NE0032 COG2255 41 1e-04
Holliday junction resolvasome helicase subunit L AL954747 NE0033 COG2255 40 0.001
Holliday junction resolvasome helicase subunit L AL954747 NE0213 COG2255 523 1.0e-150
Holliday junction resolvasome helicase subunit L AL954747 NE0433 COG2255 64 3e-11
Holliday junction resolvasome helicase subunit L AL954747 NE0528 COG2255 41 4e-04
Holliday junction resolvasome helicase subunit L AL954747 NE0906 COG2255 45 1e-05
Holliday junction resolvasome helicase subunit L AL954747 NE1053 COG2255 71 2e-13
Holliday junction resolvasome helicase subunit L AL954747 NE1278 COG2255 40 5e-04
Holliday junction resolvasome helicase subunit L AL954747 NE1733 COG2255 40 5e-04
HrpA-like helicase L AL954747 NE0833 COG1643 663 0.0
HrpA-like helicase L AL954747 NE1807 COG1643 46 7e-06
HrpA-like helicase L AL954747 NE1850 COG1643 41 3e-04
Inactivated superfamily I helicase L AL954747 NE2178 COG3893 55 2e-08
Integrase L AL954747 NE0235 COG0582 38 0.001
Integrase L AL954747 NE0338 COG0582 55 7e-09
Integrase L AL954747 NE0450 COG0582 45 8e-06
Integrase L AL954747 NE1458 COG0582 61 1e-10
Integrase L AL954747 NE2189 COG0582 47 2e-06
Methylated DNA-protein cysteine methyltransferase L AL954747 NE0885 COG0350 167 3e-43
Mg-dependent DNase L AL954747 NE1516 COG0084 302 2e-83
Micrococcal nuclease (thermonuclease) homologs L AL954747 NE2385 COG1525 84 1e-17
Mismatch repair ATPase (MutS family) L AL954747 NE0474 COG0249 36 0.004
Mismatch repair ATPase (MutS family) L AL954747 NE0830 COG1193 104 2e-23
Mismatch repair ATPase (MutS family) L AL954747 NE0830 COG0249 145 1e-35
Mismatch repair ATPase (MutS family) L AL954747 NE1705 COG1193 124 3e-29
Mismatch repair ATPase (MutS family) L AL954747 NE1705 COG0249 911 0.0
Mismatch repair ATPase (MutS family) L AL954747 NE1928 COG1193 46 1e-06
N6-adenine-specific methylase L AL954747 NE0436 COG0742 36 0.005
N6-adenine-specific methylase L AL954747 NE0654 COG0742 48 9e-07
N6-adenine-specific methylase L AL954747 NE0969 COG0742 167 3e-43
N6-adenine-specific methylase L AL954747 NE1912 COG0742 44 2e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L AL954747 NE0184 COG2816 44 5e-06
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L AL954747 NE1158 COG2816 71 5e-14
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L AL954747 NE2215 COG2816 44 2e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L AL954747 NE2253 COG2816 40 8e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L AL954747 NE2470 COG2816 34 0.007
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE0184 COG0494 46 1e-06
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE1158 COG0494 43 2e-05
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE1316 COG0494 51 6e-08
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE2215 COG0494 59 4e-10
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE2253 COG0494 57 4e-10
NTP pyrophosphohydrolase including oxidative damage repair protein L AL954747 NE2470 COG0494 39 2e-04
Nuclease subunit of the excinuclease complex L AL954747 NE0785 COG0322 43 6e-05
Nuclease subunit of the excinuclease complex L AL954747 NE0933 COG0322 634 0.0
Nucleosome binding factor SPN SPT16 subunit L AL954747 NE0275 COG5406 47 1e-06
Nucleosome binding factor SPN SPT16 subunit L AL954747 NE0959 COG5406 34 0.009
Nucleosome binding factor SPN SPT16 subunit L AL954747 NE2336 COG5406 34 0.009
Nucleotidyltransferase/DNA polymerase involved in DNA repair L AL954747 NE1219 COG0389 262 3e-71
Predicted ATPase involved in replication control Cdc46/Mcm family L AL954747 NE0017 COG1241 36 0.006
Predicted ATPase involved in replication control Cdc46/Mcm family L AL954747 NE0193 COG1241 60 5e-10
Predicted ATPase involved in replication control Cdc46/Mcm family L AL954747 NE1808 COG1241 37 0.003
Predicted ATPase involved in replication control Cdc46/Mcm family L AL954747 NE2005 COG1241 37 0.002
Predicted ATPase involved in replication control Cdc46/Mcm family L AL954747 NE2081 COG1241 37 0.003
Predicted ATP-dependent endonuclease of the OLD family L AL954747 NE1479 COG3593 43 5e-05
Predicted ATP-dependent endonuclease of the OLD family L AL954747 NE1882 COG3593 50 2e-07
Predicted ATP-dependent endonuclease of the OLD family L AL954747 NE2284 COG3593 38 0.004
Predicted DNA modification methylase L AL954747 NE0085 COG1041 35 0.008
Predicted DNA modification methylase L AL954747 NE0604 COG1041 37 0.001
Predicted DNA modification methylase L AL954747 NE1146 COG1041 35 0.006
Predicted DNA modification methylase L AL954747 NE1174 COG1041 45 1e-05
Predicted DNA modification methylase L AL954747 NE2522 COG1041 52 1e-07
Predicted DNA modification methylase L AL954747 NE2524 COG1041 53 5e-08
Predicted EndoIII-related endonuclease L AL954747 NE0056 COG0177 106 4e-24
Predicted EndoIII-related endonuclease L AL954747 NE0981 COG0177 49 2e-07
Predicted EndoIII-related endonuclease L AL954747 NE2223 COG0177 295 1e-81
Predicted endonuclease distantly related to Holliday junction resolvase L AL954747 NE0711 COG0792 118 8e-29
Predicted endonuclease distantly related to Holliday junction resolvase L AL954747 NE0719 COG0792 127 2e-31
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) L AL954747 NE1667 COG0816 137 4e-34
Predicted methylated DNA-protein cysteine methyltransferase L AL954747 NE0885 COG3695 60 6e-11
Predicted N6-adenine-specific DNA methylase L AL954747 NE1174 COG0116 365 1.0e-102
Predicted N6-adenine-specific DNA methylase L AL954747 NE2497 COG0116 50 5e-07
Predicted NTP pyrophosphohydrolase L AL954747 NE1316 COG4119 35 0.004
Predicted NTP pyrophosphohydrolase L AL954747 NE2215 COG4119 36 0.003
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L AL954747 NE1469 COG0758 37 0.001
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L AL954747 NE1968 COG0758 318 4e-88
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L AL954747 NE2521 COG0758 159 3e-40
Predicted site-specific integrase-resolvase L AL954747 NE0836 COG2452 35 0.005
Primosomal replication protein N L AL954747 NE0197 COG2965 63 3e-12
Primosomal replication protein N L AL954747 NE2453 COG2965 39 2e-04
Rad3-related DNA helicase L AL954747 NE0880 COG1199 456 1.0e-129
Rad3-related DNA helicase L AL954747 NE1807 COG1199 37 0.002
Rad3-related DNA helicase L AL954747 NE2564 COG1199 41 3e-04
RecA-family ATPase L AL954747 NE1808 COG3598 49 5e-07
RecA/RadA recombinase L AL954747 NE1808 COG0468 53 3e-08
RecA/RadA recombinase L AL954747 NE1932 COG0468 313 9e-87
RecB family exonuclease L AL954747 NE2178 COG2887 57 9e-09
RecG-like helicase L AL954747 NE0008 COG1200 366 1.0e-102
RecG-like helicase L AL954747 NE0093 COG1200 50 1e-06
RecG-like helicase L AL954747 NE0785 COG1200 43 7e-05
RecG-like helicase L AL954747 NE1505 COG1200 52 2e-07
RecG-like helicase L AL954747 NE1807 COG1200 57 3e-09
RecG-like helicase L AL954747 NE1850 COG1200 792 0.0
RecG-like helicase L AL954747 NE2040 COG1200 43 4e-05
RecG-like helicase L AL954747 NE2520 COG1200 42 1e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain L AL954747 NE1962 COG1107 36 0.008
RecJ-like exonuclease contains DnaJ-type Zn finger domain L AL954747 NE2197 COG1107 36 0.007
Recombinational DNA repair ATPase (RecF pathway) L AL954747 NE1479 COG1195 50 4e-07
Retron-type reverse transcriptase L AL954747 NE2098 COG3344 168 7e-43
Retron-type reverse transcriptase L AL954747 NE2190 COG3344 168 7e-43
Reverse gyrase L AL954747 NE0008 COG1110 50 1e-06
Reverse gyrase L AL954747 NE0785 COG1110 38 0.002
Reverse gyrase L AL954747 NE0834 COG1110 51 3e-07
Reverse gyrase L AL954747 NE1807 COG1110 41 1e-04
Reverse gyrase L AL954747 NE1850 COG1110 38 0.002
Reverse gyrase L AL954747 NE1966 COG1110 110 3e-25
Reverse gyrase L AL954747 NE2490 COG1110 43 4e-05
Single-stranded DNA-specific exonuclease L AL954747 NE0010 COG0608 377 1.0e-105
Site-specific recombinase DNA invertase Pin homologs L AL954747 NE0236 COG1961 70 5e-13
Site-specific recombinase DNA invertase Pin homologs L AL954747 NE0257 COG1961 115 2e-27
Site-specific recombinase DNA invertase Pin homologs L AL954747 NE0751 COG1961 106 9e-25
Site-specific recombinase DNA invertase Pin homologs L AL954747 NE0836 COG1961 108 3e-25
Site-specific recombinase DNA invertase Pin homologs L AL954747 NE2541 COG1961 133 3e-32
Site-specific recombinase XerC L AL954747 NE0338 COG4973 307 9e-85
Site-specific recombinase XerC L AL954747 NE0450 COG4973 102 3e-23
Site-specific recombinase XerC L AL954747 NE1458 COG4973 227 1e-60
Site-specific recombinase XerC L AL954747 NE2189 COG4973 101 8e-23
Site-specific recombinase XerD L AL954747 NE0235 COG4974 45 1e-05
Site-specific recombinase XerD L AL954747 NE0338 COG4974 263 8e-72
Site-specific recombinase XerD L AL954747 NE0450 COG4974 154 5e-39
Site-specific recombinase XerD L AL954747 NE1458 COG4974 373 1.0e-104
Site-specific recombinase XerD L AL954747 NE2189 COG4974 163 1e-41
Superfamily I DNA and RNA helicase L AL954747 NE0093 COG0210 128 3e-30
Superfamily I DNA and RNA helicase L AL954747 NE1473 COG0210 579 1.0e-166
Superfamily I DNA and RNA helicase L AL954747 NE2166 COG0210 158 2e-39
Superfamily I DNA and RNA helicase L AL954747 NE2178 COG0210 44 6e-05
Superfamily II DNA and RNA helicase L AL954747 NE0008 COG0513 74 5e-14
Superfamily II DNA and RNA helicase L AL954747 NE0093 COG0513 112 3e-25
Superfamily II DNA and RNA helicase L AL954747 NE0785 COG0513 72 1e-13
Superfamily II DNA and RNA helicase L AL954747 NE0833 COG0513 41 8e-04
Superfamily II DNA and RNA helicase L AL954747 NE0834 COG0513 47 6e-06
Superfamily II DNA and RNA helicase L AL954747 NE0880 COG0513 37 0.005
Superfamily II DNA and RNA helicase L AL954747 NE1505 COG0513 45 2e-05
Superfamily II DNA and RNA helicase L AL954747 NE1807 COG0513 411 1.0e-116
Superfamily II DNA and RNA helicase L AL954747 NE1850 COG0513 72 1e-13
Superfamily II DNA and RNA helicase L AL954747 NE2040 COG0513 418 1.0e-118
Superfamily II DNA and RNA helicase L AL954747 NE2311 COG0513 67 8e-12
Superfamily II DNA and RNA helicase L AL954747 NE2520 COG0513 106 4e-24
Superfamily II DNA and RNA helicase L AL954747 NE2564 COG0513 102 5e-23
Superfamily II DNA helicase L AL954747 NE0008 COG0514 55 3e-08
Superfamily II DNA helicase L AL954747 NE0093 COG0514 323 5e-89
Superfamily II DNA helicase L AL954747 NE0785 COG0514 49 1e-06
Superfamily II DNA helicase L AL954747 NE1505 COG0514 39 0.001
Superfamily II DNA helicase L AL954747 NE1807 COG0514 114 1e-26
Superfamily II DNA helicase L AL954747 NE1850 COG0514 55 2e-08
Superfamily II DNA helicase L AL954747 NE2040 COG0514 108 8e-25
Superfamily II DNA helicase L AL954747 NE2499 COG0514 47 7e-06
Superfamily II DNA helicase L AL954747 NE2520 COG0514 340 1e-94
Superfamily II DNA helicase L AL954747 NE2564 COG0514 586 1.0e-168
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE0008 COG4098 70 7e-13
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE0785 COG4098 57 5e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE1505 COG4098 57 4e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE1807 COG4098 40 3e-04
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE1850 COG4098 56 7e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L AL954747 NE2520 COG4098 38 0.002
Superfamily II DNA/RNA helicase SNF2 family L AL954747 NE1807 COG0553 43 4e-05
Superfamily II DNA/RNA helicase SNF2 family L AL954747 NE2040 COG0553 43 5e-05
Superfamily II DNA/RNA helicase SNF2 family L AL954747 NE2311 COG0553 105 1e-23
Superfamily II RNA helicase L AL954747 NE0008 COG4581 45 3e-05
Superfamily II RNA helicase L AL954747 NE0093 COG4581 37 0.008
Superfamily II RNA helicase L AL954747 NE1807 COG4581 41 2e-04
Superfamily II RNA helicase L AL954747 NE2520 COG4581 47 7e-06
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE0008 COG1197 1344 0.0
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE0785 COG1197 129 6e-31
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE1505 COG1197 66 7e-12
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE1807 COG1197 39 6e-04
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE1850 COG1197 354 2e-98
Transcription-repair coupling factor (superfamily II helicase) L AL954747 NE2040 COG1197 36 0.006
Transposase and inactivated derivatives L AL954747 NE0134 COG3677 55 6e-09
Transposase and inactivated derivatives L AL954747 NE0154 COG2963 39 4e-05
Transposase and inactivated derivatives L AL954747 NE0155 COG2801 82 4e-17
Transposase and inactivated derivatives L AL954747 NE0253 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE0271 COG3293 42 9e-06
Transposase and inactivated derivatives L AL954747 NE0272 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE0341 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE0342 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE0451 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE0518 COG3293 62 1e-11
Transposase and inactivated derivatives L AL954747 NE0519 COG3293 66 1e-12
Transposase and inactivated derivatives L AL954747 NE0547 COG3415 35 0.004
Transposase and inactivated derivatives L AL954747 NE0560 COG3293 62 1e-11
Transposase and inactivated derivatives L AL954747 NE0561 COG3293 66 1e-12
Transposase and inactivated derivatives L AL954747 NE0708 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE0715 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE0716 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE0744 COG3677 55 6e-09
Transposase and inactivated derivatives L AL954747 NE1093 COG3666 58 1e-09
Transposase and inactivated derivatives L AL954747 NE1106 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE1107 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE1222 COG3293 64 1e-11
Transposase and inactivated derivatives L AL954747 NE1261 COG2801 75 4e-15
Transposase and inactivated derivatives L AL954747 NE1271 COG2801 75 4e-15
Transposase and inactivated derivatives L AL954747 NE1521 COG3293 53 8e-09
Transposase and inactivated derivatives L AL954747 NE1522 COG3293 54 2e-09
Transposase and inactivated derivatives L AL954747 NE1552 COG3293 54 2e-09
Transposase and inactivated derivatives L AL954747 NE1553 COG3293 55 2e-09
Transposase and inactivated derivatives L AL954747 NE1557 COG3415 38 2e-04
Transposase and inactivated derivatives L AL954747 NE1558 COG3335 47 4e-07
Transposase and inactivated derivatives L AL954747 NE1585 COG3293 69 2e-13
Transposase and inactivated derivatives L AL954747 NE1586 COG3293 63 7e-12
Transposase and inactivated derivatives L AL954747 NE1630 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE1631 COG3293 42 9e-06
Transposase and inactivated derivatives L AL954747 NE1698 COG3677 55 6e-09
Transposase and inactivated derivatives L AL954747 NE1788 COG3293 62 1e-11
Transposase and inactivated derivatives L AL954747 NE1789 COG3293 69 2e-13
Transposase and inactivated derivatives L AL954747 NE1816 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE1990 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE1991 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE1995 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE2010 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE2011 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE2023 COG3293 44 3e-06
Transposase and inactivated derivatives L AL954747 NE2024 COG3293 43 7e-06
Transposase and inactivated derivatives L AL954747 NE2097 COG2801 75 5e-15
Transposase and inactivated derivatives L AL954747 NE2108 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE2155 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE2200 COG3293 63 7e-12
Transposase and inactivated derivatives L AL954747 NE2201 COG3293 69 2e-13
Transposase and inactivated derivatives L AL954747 NE2238 COG1943 106 5e-25
Transposase and inactivated derivatives L AL954747 NE2273 COG3293 62 1e-11
Transposase and inactivated derivatives L AL954747 NE2274 COG3293 66 1e-12
Transposase and inactivated derivatives L AL954747 NE2412 COG3293 62 1e-11
Transposase and inactivated derivatives L AL954747 NE2413 COG3293 57 6e-10
Transposase and inactivated derivatives L AL954747 NE2446 COG3293 69 2e-13
Transposase and inactivated derivatives L AL954747 NE2447 COG3293 63 7e-12
Transposase and inactivated derivatives L AL954747 NE2486 COG3415 35 0.007
Transposase and inactivated derivatives L AL954747 NE2515 COG2801 77 2e-15
Transposase and inactivated derivatives L AL954747 NE2532 COG2801 77 2e-15
Transposase and inactivated derivatives TnpA family L AL954747 NE0835 COG4644 282 6e-77
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0110 COG1343 43 3e-06
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0111 COG1518 175 5e-45
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0112 COG1343 41 2e-05
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0115 COG1517 37 0.002
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0122 COG1421 33 0.008
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0844 COG1518 157 7e-40
Uncharacterized protein predicted to be involved in DNA repair L AL954747 NE0845 COG1343 66 4e-13
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0119 COG1332 61 3e-10
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0120 COG1567 52 5e-08
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0121 COG1337 158 4e-40
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0121 COG1604 46 2e-06
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0121 COG1336 50 1e-07
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L AL954747 NE0121 COG1332 38 8e-04
Uncharacterized protein related to Endonuclease III L AL954747 NE0056 COG2231 49 6e-07
Uncharacterized protein related to Endonuclease III L AL954747 NE0981 COG2231 36 0.002
Uncharacterized protein related to Endonuclease III L AL954747 NE2223 COG2231 76 2e-15
Uracil-DNA glycosylase L AL954747 NE0931 COG1573 103 8e-24
Uracil-DNA glycosylase L AL954747 NE1122 COG1573 156 1e-39
Uracil-DNA glycosylase L AL954747 NE1398 COG1573 169 2e-43

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