Signal Transduction Mechanisms

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP0455	COG0834	131	4e-32
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP0550	COG0834	134	5e-33
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP0712	COG0834	99	3e-22
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP0770	COG0834	113	9e-27
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP1224	COG0834	124	7e-30
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP1225	COG0834	122	2e-29
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX950229	MMP1632	COG0834	118	3e-28
ACT domain-containing protein	T	BX950229	MMP0400	COG3830	34	0.009
ACT domain-containing protein	T	BX950229	MMP0657	COG3830	97	2e-22
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	T	BX950229	MMP0529	COG1366	40	5e-04
Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component	T	BX950229	MMP0399	COG4219	36	0.004
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX950229	MMP0927	COG4251	43	1e-04
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX950229	MMP1120	COG4251	125	1e-29
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX950229	MMP1303	COG4251	137	3e-33
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX950229	MMP0402	COG0664	35	0.009
CBS-domain-containing membrane protein	T	BX950229	MMP0052	COG3448	54	1e-08
CBS-domain-containing membrane protein	T	BX950229	MMP0101	COG3448	40	9e-05
CBS-domain-containing membrane protein	T	BX950229	MMP0133	COG3448	74	3e-14
CBS-domain-containing membrane protein	T	BX950229	MMP0278	COG3448	52	2e-08
CBS-domain-containing membrane protein	T	BX950229	MMP0287	COG3448	55	7e-09
CBS-domain-containing membrane protein	T	BX950229	MMP0407	COG3448	86	1e-18
CBS-domain-containing membrane protein	T	BX950229	MMP0420	COG3448	74	2e-14
CBS-domain-containing membrane protein	T	BX950229	MMP0453	COG3448	66	3e-12
CBS-domain-containing membrane protein	T	BX950229	MMP0863	COG3448	38	3e-04
CBS-domain-containing membrane protein	T	BX950229	MMP0908	COG3448	53	4e-09
CBS-domain-containing membrane protein	T	BX950229	MMP1016	COG3448	55	1e-08
CBS-domain-containing membrane protein	T	BX950229	MMP1251	COG3448	63	2e-11
CBS-domain-containing membrane protein	T	BX950229	MMP1252	COG3448	77	2e-15
CBS-domain-containing membrane protein	T	BX950229	MMP1359	COG3448	70	4e-13
CBS-domain-containing membrane protein	T	BX950229	MMP1466	COG3448	55	5e-09
Chemotaxis protein CheC inhibitor of MCP methylation	T	BX950229	MMP0931	COG1776	53	2e-08
Chemotaxis protein CheC inhibitor of MCP methylation	T	BX950229	MMP0932	COG1776	66	2e-12
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP0487	COG0643	39	0.001
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP0788	COG0643	37	0.004
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP0925	COG0643	45	3e-06
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP0927	COG0643	492	1.0e-140
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP1120	COG0643	55	2e-08
Chemotaxis protein histidine kinase and related kinase	T	BX950229	MMP1303	COG0643	59	9e-10
Chemotaxis protein; stimulates methylation of MCP protein	T	BX950229	MMP0928	COG1871	145	2e-36
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX950229	MMP0926	COG2201	358	1.0e-100
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX950229	MMP0933	COG2201	85	1e-18
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX950229	MMP1304	COG2201	52	1e-08
Chemotaxis signal transduction protein	T	BX950229	MMP0925	COG0835	111	2e-26
Chemotaxis signal transduction protein	T	BX950229	MMP0927	COG0835	43	8e-05
DNA-binding transcriptional activator of the SARP family	T	BX950229	MMP0885	COG3629	36	0.005
FOG: CheY-like receiver	T	BX950229	MMP0926	COG0784	80	3e-16
FOG: CheY-like receiver	T	BX950229	MMP0933	COG0784	80	4e-17
FOG: CheY-like receiver	T	BX950229	MMP1304	COG0784	88	2e-19
FOG: HAMP domain	T	BX950229	MMP0413	COG2770	50	6e-07
FOG: HAMP domain	T	BX950229	MMP0487	COG2770	40	4e-04
FOG: HAMP domain	T	BX950229	MMP0788	COG2770	38	0.003
FOG: HAMP domain	T	BX950229	MMP1120	COG2770	39	8e-04
FOG: HAMP domain	T	BX950229	MMP1303	COG2770	52	1e-07
FOG: HPt domain	T	BX950229	MMP0927	COG2198	37	0.009
Glycosyl transferase related to UDP-glucuronosyltransferase	T	BX950229	MMP0403	COG1819	182	3e-47
Guanosine polyphosphate pyrophosphohydrolase/synthetase	T	BX950229	MMP0657	COG0317	36	5e-04
Guanosine polyphosphate pyrophosphohydrolase/synthetase	T	BX950229	MMP1122	COG0317	46	6e-06
HD-GYP domain	T	BX950229	MMP1121	COG2206	34	0.007
Methyl-accepting chemotaxis protein	T	BX950229	MMP0413	COG0840	141	2e-34
Methyl-accepting chemotaxis protein	T	BX950229	MMP0487	COG0840	143	4e-35
Methyl-accepting chemotaxis protein	T	BX950229	MMP0788	COG0840	137	4e-33
Methyl-accepting chemotaxis protein	T	BX950229	MMP0929	COG0840	117	1e-27
Methyl-accepting chemotaxis protein	T	BX950229	MMP1120	COG0840	53	6e-08
Methyl-accepting chemotaxis protein	T	BX950229	MMP1303	COG0840	56	7e-09
Methylase of chemotaxis methyl-accepting protein	T	BX950229	MMP0930	COG1352	237	5e-64
Mn2+-dependent serine/threonine protein kinase	T	BX950229	MMP0004	COG3642	37	0.002
Mn2+-dependent serine/threonine protein kinase	T	BX950229	MMP0415	COG3642	214	2e-56
Mn2+-dependent serine/threonine protein kinase	T	BX950229	MMP0604	COG3642	36	0.003
Mn2+-dependent serine/threonine protein kinase	T	BX950229	MMP1612	COG3642	49	2e-07
Osmosensitive K+ channel histidine kinase	T	BX950229	MMP0585	COG2205	37	5e-04
Osmosensitive K+ channel histidine kinase	T	BX950229	MMP0927	COG2205	54	3e-08
Osmosensitive K+ channel histidine kinase	T	BX950229	MMP1120	COG2205	182	7e-47
Osmosensitive K+ channel histidine kinase	T	BX950229	MMP1303	COG2205	182	5e-47
Phosphohistidine swiveling domain	T	BX950229	MMP1094	COG3848	103	4e-23
Predicted membrane GTPase involved in stress response	T	BX950229	MMP0284	COG1217	57	3e-09
Predicted membrane GTPase involved in stress response	T	BX950229	MMP1208	COG1217	62	9e-11
Predicted membrane GTPase involved in stress response	T	BX950229	MMP1336	COG1217	87	3e-18
Predicted membrane GTPase involved in stress response	T	BX950229	MMP1369	COG1217	210	3e-55
Predicted membrane GTPase involved in stress response	T	BX950229	MMP1370	COG1217	95	1e-20
Predicted secreted protein containing a PDZ domain	T	BX950229	MMP0169	COG3480	40	2e-04
Predicted secreted protein containing a PDZ domain	T	BX950229	MMP1062	COG3480	60	4e-10
Predicted Ser/Thr protein kinase	T	BX950229	MMP0415	COG2112	41	3e-04
Predicted Ser/Thr protein kinase	T	BX950229	MMP1612	COG2112	109	2e-25
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain	T	BX950229	MMP0219	COG3887	50	2e-07
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain	T	BX950229	MMP0244	COG3887	86	3e-18
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain	T	BX950229	MMP0285	COG3887	83	4e-17
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0052	COG2905	58	8e-10
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0101	COG2905	35	0.003
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0133	COG2905	73	6e-14
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0278	COG2905	47	7e-07
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0287	COG2905	50	2e-07
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0407	COG2905	62	1e-11
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0420	COG2905	58	1e-09
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0453	COG2905	48	8e-07
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP0908	COG2905	50	5e-08
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1016	COG2905	69	5e-13
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1152	COG2905	40	6e-05
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1251	COG2905	85	4e-18
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1252	COG2905	61	8e-11
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1359	COG2905	73	7e-14
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX950229	MMP1466	COG2905	53	2e-08
Predicted signal transduction protein with a C-terminal ATPase domain	T	BX950229	MMP1120	COG2972	53	7e-08
Predicted signal transduction protein with a C-terminal ATPase domain	T	BX950229	MMP1303	COG2972	47	3e-06
Protein involved in regulation of cellular morphogenesis/cytokinesis	T	BX950229	MMP1341	COG5261	37	0.006
Protein-tyrosine-phosphatase	T	BX950229	MMP0488	COG0394	75	1e-15
Putative regulator of cell autolysis	T	BX950229	MMP1120	COG3275	38	0.003
RecA-superfamily ATPase implicated in signal transduction	T	BX950229	MMP0617	COG0467	47	1e-06
RecA-superfamily ATPase implicated in signal transduction	T	BX950229	MMP1222	COG0467	41	1e-04
RecA-superfamily ATPase implicated in signal transduction	T	BX950229	MMP1674	COG0467	66	2e-12
Response regulator	T	BX950229	MMP0926	COG4566	57	2e-09
Response regulator	T	BX950229	MMP0933	COG4566	41	2e-05
Response regulator	T	BX950229	MMP1304	COG4566	64	3e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX950229	MMP0933	COG4567	50	5e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX950229	MMP1304	COG4567	53	7e-09
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX950229	MMP0926	COG3706	64	1e-11
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX950229	MMP0933	COG3706	70	4e-14
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX950229	MMP1304	COG3706	72	1e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX950229	MMP0926	COG3437	61	1e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX950229	MMP0933	COG3437	71	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX950229	MMP1304	COG3437	86	9e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX950229	MMP0926	COG2197	92	8e-20
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX950229	MMP0933	COG2197	99	7e-23
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX950229	MMP1304	COG2197	70	4e-14
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP0470	COG2204	43	7e-05
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP0748	COG2204	36	0.009
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP0926	COG2204	78	1e-15
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP0933	COG2204	72	1e-14
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP1186	COG2204	44	5e-05
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX950229	MMP1304	COG2204	95	1e-21
Response regulator containing CheY-like receiver and SARP domains	T	BX950229	MMP0926	COG3947	66	5e-12
Response regulator containing CheY-like receiver and SARP domains	T	BX950229	MMP0933	COG3947	63	4e-12
Response regulator containing CheY-like receiver and SARP domains	T	BX950229	MMP1304	COG3947	65	1e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX950229	MMP0926	COG4753	86	3e-18
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX950229	MMP0933	COG4753	88	2e-19
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX950229	MMP1304	COG4753	75	1e-15
Response regulator of citrate/malate metabolism	T	BX950229	MMP0926	COG4565	64	2e-11
Response regulator of citrate/malate metabolism	T	BX950229	MMP0933	COG4565	79	7e-17
Response regulator of citrate/malate metabolism	T	BX950229	MMP1304	COG4565	70	4e-14
Response regulator of the LytR/AlgR family	T	BX950229	MMP0926	COG3279	66	5e-12
Response regulator of the LytR/AlgR family	T	BX950229	MMP0933	COG3279	60	4e-11
Response regulator of the LytR/AlgR family	T	BX950229	MMP1304	COG3279	46	6e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX950229	MMP0926	COG0745	72	6e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX950229	MMP0933	COG0745	78	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX950229	MMP1304	COG0745	107	2e-25
Response regulator with putative antiterminator output domain	T	BX950229	MMP0926	COG3707	57	2e-09
Response regulator with putative antiterminator output domain	T	BX950229	MMP0933	COG3707	58	2e-10
Response regulator with putative antiterminator output domain	T	BX950229	MMP1304	COG3707	45	2e-06
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	BX950229	MMP0004	COG0478	279	1e-76
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	BX950229	MMP0415	COG0478	47	3e-06
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	BX950229	MMP0604	COG0478	103	1e-23
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	BX950229	MMP1612	COG0478	44	7e-06
Serine/threonine protein kinase	T	BX950229	MMP0415	COG0515	46	9e-06
Serine/threonine protein kinase involved in cell cycle control	T	BX950229	MMP0004	COG1718	99	2e-22
Serine/threonine protein kinase involved in cell cycle control	T	BX950229	MMP0415	COG1718	38	0.002
Serine/threonine protein kinase involved in cell cycle control	T	BX950229	MMP0604	COG1718	260	9e-71
Signal transduction histidine kinase	T	BX950229	MMP0413	COG5002	62	2e-10
Signal transduction histidine kinase	T	BX950229	MMP0487	COG5002	65	2e-11
Signal transduction histidine kinase	T	BX950229	MMP0788	COG5002	61	2e-10
Signal transduction histidine kinase	T	BX950229	MMP0927	COG0642	62	2e-10
Signal transduction histidine kinase	T	BX950229	MMP0927	COG4585	46	1e-05
Signal transduction histidine kinase	T	BX950229	MMP0927	COG5002	37	0.006
Signal transduction histidine kinase	T	BX950229	MMP0989	COG0642	46	9e-06
Signal transduction histidine kinase	T	BX950229	MMP1120	COG0642	183	4e-47
Signal transduction histidine kinase	T	BX950229	MMP1120	COG4585	58	2e-09
Signal transduction histidine kinase	T	BX950229	MMP1120	COG5002	158	1e-39
Signal transduction histidine kinase	T	BX950229	MMP1303	COG0642	198	8e-52
Signal transduction histidine kinase	T	BX950229	MMP1303	COG4585	62	1e-10
Signal transduction histidine kinase	T	BX950229	MMP1303	COG5002	185	9e-48
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP0413	COG5000	53	5e-08
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP0487	COG5000	54	4e-08
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP0788	COG5000	44	3e-05
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP0927	COG5000	40	6e-04
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP1120	COG5000	85	2e-17
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX950229	MMP1303	COG5000	78	1e-15
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX950229	MMP0413	COG3850	53	7e-08
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX950229	MMP0487	COG3850	42	1e-04
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX950229	MMP0788	COG3850	42	1e-04
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX950229	MMP1120	COG3850	51	2e-07
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX950229	MMP1303	COG3850	63	6e-11
Signal transduction histidine kinase nitrogen specific	T	BX950229	MMP1120	COG3852	100	6e-22
Signal transduction histidine kinase nitrogen specific	T	BX950229	MMP1303	COG3852	86	6e-18
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX950229	MMP0927	COG4191	55	4e-08
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX950229	MMP0989	COG4191	39	0.001
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX950229	MMP1120	COG4191	99	9e-22
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX950229	MMP1303	COG4191	96	9e-21
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP0413	COG3290	38	0.003
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP0487	COG3290	36	0.007
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP0927	COG3290	47	7e-06
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP0989	COG3290	42	1e-04
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP1120	COG3290	90	4e-19
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX950229	MMP1303	COG3290	88	2e-18
Signal transduction histidine kinase regulating phosphoglycerate transport system	T	BX950229	MMP1120	COG4192	81	2e-16
Signal transduction histidine kinase regulating phosphoglycerate transport system	T	BX950229	MMP1303	COG4192	102	1e-22
Signal transduction protein containing GAF and PtsI domains	T	BX950229	MMP1094	COG3605	198	1e-51

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Putative stress-responsive transcriptional regulator protein	T	BX950229	MMP1376	COG1983	76	7e-16
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	T	BX950229	MMP1186	COG3604	36	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	BX950229	MMP1186	COG3829	36	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	BX950229	MMP1647	COG3829	44	2e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX950229	MMP0470	COG1221	38	0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX950229	MMP0748	COG1221	38	0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX950229	MMP1647	COG1221	35	0.008

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Universal stress protein UspA and related nucleotide-binding protein	T	BX950229	MMP0585	COG0589	95	1e-21

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