Transcription

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component	K	BX950229	MMP0399	COG4219	36	0.004

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS	K	BX950229	MMP1429	COG1594	101	1e-23
Predicted transcription factor homolog of eukaryotic MBF1	K	BX950229	MMP0568	COG1813	39	2e-04
Predicted transcription factor homolog of eukaryotic MBF1	K	BX950229	MMP0674	COG1813	32	0.007
Predicted transcription factor homolog of eukaryotic MBF1	K	BX950229	MMP0678	COG1813	37	0.002
Predicted transcription factor homolog of eukaryotic MBF1	K	BX950229	MMP0993	COG1813	36	4e-04
Predicted transcription factor homolog of eukaryotic MBF1	K	BX950229	MMP1646	COG1813	112	1e-26
TATA-box binding protein (TBP) component of TFIID and TFIIIB	K	BX950229	MMP0257	COG2101	214	2e-57
Transcription antiterminator	K	BX950229	MMP1410	COG0250	35	0.001
Transcription antiterminator	K	BX950229	MMP1434	COG0250	84	3e-18
Transcription elongation factor	K	BX950229	MMP1366	COG0195	102	1e-23
Transcription factor homologous to NACalpha-BTF3	K	BX950229	MMP0290	COG1308	93	5e-21
Transcription initiation factor IIE alpha subunit	K	BX950229	MMP0036	COG1675	140	8e-35
Transcription initiation factor IIE alpha subunit	K	BX950229	MMP0095	COG1675	37	0.002
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	BX950229	MMP0041	COG1405	357	1.0e-100

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK cyclin H subunit	K	BX950229	MMP0041	COG5333	41	1e-04
DNA-binding HTH domain-containing protein	K	BX950229	MMP0018	COG2771	38	7e-04
DNA-binding protein	K	BX950229	MMP1613	COG1581	104	2e-24

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	BX950229	MMP1322	COG0202	96	2e-21
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	BX950229	MMP1361	COG0085	423	1.0e-119
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	BX950229	MMP1362	COG0085	691	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	BX950229	MMP1363	COG0086	782	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	BX950229	MMP1364	COG0086	226	2e-60
DNA-directed RNA polymerase subunit E'	K	BX950229	MMP0440	COG1095	218	2e-58
DNA-directed RNA polymerase subunit E''	K	BX950229	MMP0441	COG2093	68	1e-13
DNA-directed RNA polymerase subunit H RpoH/RPB5	K	BX950229	MMP1360	COG2012	86	3e-19
DNA-directed RNA polymerase subunit K/omega	K	BX950229	MMP1327	COG1758	39	8e-05
DNA-directed RNA polymerase subunit L	K	BX950229	MMP0261	COG1761	62	8e-12
DNA-directed RNA polymerase subunit N (RpoN/RPB10)	K	BX950229	MMP1326	COG1644	82	1e-17
DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger)	K	BX950229	MMP0248	COG1996	48	1e-07

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	BX950229	MMP0024	COG1224	51	1e-07
DNA helicase TIP49 TBP-interacting protein	K	BX950229	MMP0176	COG1224	50	8e-07
DNA helicase TIP49 TBP-interacting protein	K	BX950229	MMP0322	COG1224	38	0.001
DNA helicase TIP49 TBP-interacting protein	K	BX950229	MMP1647	COG1224	39	6e-04
DNA or RNA helicase of superfamily II	K	BX950229	MMP0028	COG1061	39	6e-04
DNA or RNA helicase of superfamily II	K	BX950229	MMP0457	COG1061	72	1e-13
DNA or RNA helicase of superfamily II	K	BX950229	MMP0494	COG1061	59	2e-09
DNA or RNA helicase of superfamily II	K	BX950229	MMP0727	COG1061	59	1e-09
DNA or RNA helicase of superfamily II	K	BX950229	MMP0890	COG1061	72	1e-13
DNA or RNA helicase of superfamily II	K	BX950229	MMP1141	COG1061	69	2e-12
DNA or RNA helicase of superfamily II	K	BX950229	MMP1284	COG1061	61	3e-10
DNA or RNA helicase of superfamily II	K	BX950229	MMP1395	COG1061	84	4e-17
dsRNA-specific ribonuclease	K	BX950229	MMP1526	COG0571	223	1e-59
Exoribonuclease R	K	BX950229	MMP0440	COG0557	59	3e-10
Exoribonuclease R	K	BX950229	MMP1707	COG0557	34	0.009
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	BX950229	MMP0657	COG0317	36	5e-04
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	BX950229	MMP1122	COG0317	46	6e-06
Histone acetyltransferase	K	BX950229	MMP0047	COG1243	43	4e-05
Histone acetyltransferase	K	BX950229	MMP1014	COG1243	41	2e-04
Histone acetyltransferase	K	BX950229	MMP1350	COG1243	46	5e-06
Histone acetyltransferase	K	BX950229	MMP1495	COG1243	115	4e-27
Histone acetyltransferase	K	BX950229	MMP1577	COG1243	661	0.0
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	BX950229	MMP0271	COG0378	178	4e-46
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	BX950229	MMP0833	COG0378	41	1e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	BX950229	MMP1520	COG0378	196	1e-51
Nucleosome binding factor SPN SPT16 subunit	K	BX950229	MMP0275	COG5406	41	3e-04
Nucleosome binding factor SPN SPT16 subunit	K	BX950229	MMP1204	COG5406	48	1e-06
Predicted metal-binding transcription factor	K	BX950229	MMP1704	COG4008	206	7e-55
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	BX950229	MMP1028	COG1293	312	5e-86
Predicted transcriptional regulator protein	K	BX950229	MMP0217	COG4742	33	0.004
Predicted transcriptional regulator protein	K	BX950229	MMP0402	COG4190	44	2e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0402	COG3888	37	0.002
Predicted transcriptional regulator protein	K	BX950229	MMP0499	COG4742	34	0.007
Predicted transcriptional regulator protein	K	BX950229	MMP0527	COG4190	36	0.003
Predicted transcriptional regulator protein	K	BX950229	MMP0527	COG3888	35	0.005
Predicted transcriptional regulator protein	K	BX950229	MMP0530	COG3888	35	0.003
Predicted transcriptional regulator protein	K	BX950229	MMP0637	COG4742	36	0.002
Predicted transcriptional regulator protein	K	BX950229	MMP0637	COG4189	38	5e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0752	COG4190	33	0.004
Predicted transcriptional regulator protein	K	BX950229	MMP0907	COG4189	33	0.008
Predicted transcriptional regulator protein	K	BX950229	MMP1100	COG4738	38	3e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1442	COG4189	44	3e-06
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0052	COG4109	44	1e-05
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0133	COG4109	58	2e-09
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0278	COG4109	44	4e-06
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0287	COG4109	65	7e-12
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0407	COG4109	53	1e-08
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0420	COG4109	55	9e-09
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0453	COG4109	43	3e-05
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0863	COG4109	41	3e-05
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP0908	COG4109	46	1e-06
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP1016	COG4109	55	1e-08
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP1251	COG4109	45	3e-06
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP1252	COG4109	45	5e-06
Predicted transcriptional regulator protein containing CBS domains	K	BX950229	MMP1359	COG4109	62	9e-11
Predicted transcriptional regulator protein with an HTH domain	K	BX950229	MMP1499	COG4800	160	4e-41
Predicted transcriptional regulator/sugar kinase	K	BX950229	MMP0072	COG1548	341	3e-95
Predicted transcription regulator containing HTH domain	K	BX950229	MMP1100	COG5625	40	9e-05
Rad3-related DNA helicase	K	BX950229	MMP1141	COG1199	40	0.001
Rad3-related DNA helicase	K	BX950229	MMP1219	COG1199	253	2e-68
Rad3-related DNA helicase	K	BX950229	MMP1581	COG1199	36	0.007
RecG-like helicase	K	BX950229	MMP0457	COG1200	68	1e-12
RecG-like helicase	K	BX950229	MMP0494	COG1200	49	9e-07
RecG-like helicase	K	BX950229	MMP0727	COG1200	39	7e-04
RecG-like helicase	K	BX950229	MMP0890	COG1200	53	7e-08
RecG-like helicase	K	BX950229	MMP1284	COG1200	47	5e-06
RecG-like helicase	K	BX950229	MMP1395	COG1200	51	4e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	BX950229	MMP0933	COG4567	50	5e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	BX950229	MMP1304	COG4567	53	7e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	BX950229	MMP0926	COG3437	61	1e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	BX950229	MMP0933	COG3437	71	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	BX950229	MMP1304	COG3437	86	9e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	BX950229	MMP0926	COG2197	92	8e-20
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	BX950229	MMP0933	COG2197	99	7e-23
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	BX950229	MMP1304	COG2197	70	4e-14
Response regulator of citrate/malate metabolism	K	BX950229	MMP0926	COG4565	64	2e-11
Response regulator of citrate/malate metabolism	K	BX950229	MMP0933	COG4565	79	7e-17
Response regulator of citrate/malate metabolism	K	BX950229	MMP1304	COG4565	70	4e-14
Response regulator of the LytR/AlgR family	K	BX950229	MMP0926	COG3279	66	5e-12
Response regulator of the LytR/AlgR family	K	BX950229	MMP0933	COG3279	60	4e-11
Response regulator of the LytR/AlgR family	K	BX950229	MMP1304	COG3279	46	6e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	BX950229	MMP0926	COG0745	72	6e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	BX950229	MMP0933	COG0745	78	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	BX950229	MMP1304	COG0745	107	2e-25
Serine/threonine protein kinase	K	BX950229	MMP0415	COG0515	46	9e-06
Small nuclear ribonucleoprotein (snRNP) homolog	K	BX950229	MMP1148	COG1958	57	3e-10
Superfamily II DNA and RNA helicase	K	BX950229	MMP0457	COG0513	418	1.0e-118
Superfamily II DNA and RNA helicase	K	BX950229	MMP0494	COG0513	93	5e-20
Superfamily II DNA and RNA helicase	K	BX950229	MMP0727	COG0513	67	4e-12
Superfamily II DNA and RNA helicase	K	BX950229	MMP0890	COG0513	74	3e-14
Superfamily II DNA and RNA helicase	K	BX950229	MMP1141	COG0513	111	2e-25
Superfamily II DNA and RNA helicase	K	BX950229	MMP1219	COG0513	40	6e-04
Superfamily II DNA and RNA helicase	K	BX950229	MMP1284	COG0513	97	5e-21
Superfamily II DNA and RNA helicase	K	BX950229	MMP1395	COG0513	77	6e-15
Superfamily II DNA/RNA helicase SNF2 family	K	BX950229	MMP0457	COG0553	39	0.001
Superfamily II DNA/RNA helicase SNF2 family	K	BX950229	MMP1395	COG0553	44	5e-05
Transcriptional accessory protein	K	BX950229	MMP0440	COG2183	42	2e-05
Transcriptional accessory protein	K	BX950229	MMP1127	COG2183	832	0.0
Transcriptional accessory protein	K	BX950229	MMP1707	COG2183	48	8e-07
Transcriptional activator of acetoin/glycerol metabolism	K	BX950229	MMP0024	COG3284	38	0.002
Transcriptional activator of acetoin/glycerol metabolism	K	BX950229	MMP0176	COG3284	46	1e-05
Transcriptional activator of acetoin/glycerol metabolism	K	BX950229	MMP1186	COG3284	39	0.001
Transcriptional activator of acetoin/glycerol metabolism	K	BX950229	MMP1647	COG3284	44	2e-05
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	BX950229	MMP0559	COG4977	49	1e-07

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Mn-dependent transcriptional regulator protein	K	BX950229	MMP0402	COG1321	36	0.004
Mn-dependent transcriptional regulator protein	K	BX950229	MMP0631	COG1321	129	6e-32
Mn-dependent transcriptional regulator protein	K	BX950229	MMP0787	COG1321	40	1e-04
Mn-dependent transcriptional regulator protein	K	BX950229	MMP1052	COG1321	35	0.004
Mn-dependent transcriptional regulator protein	K	BX950229	MMP1137	COG1321	33	0.009
Predicted transcriptional regulator protein	K	BX950229	MMP0052	COG1959	35	0.005
Predicted transcriptional regulator protein	K	BX950229	MMP0052	COG3620	59	3e-10
Predicted transcriptional regulator protein	K	BX950229	MMP0052	COG2524	285	3e-78
Predicted transcriptional regulator protein	K	BX950229	MMP0097	COG1396	42	3e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0097	COG3620	45	3e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0097	COG1395	34	0.007
Predicted transcriptional regulator protein	K	BX950229	MMP0097	COG1476	38	5e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0101	COG2524	41	6e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0133	COG3620	52	9e-08
Predicted transcriptional regulator protein	K	BX950229	MMP0133	COG2524	70	5e-13
Predicted transcriptional regulator protein	K	BX950229	MMP0168	COG1695	48	2e-07
Predicted transcriptional regulator protein	K	BX950229	MMP0209	COG1396	43	1e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0209	COG3620	39	2e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0209	COG1476	41	4e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0217	COG0640	48	2e-07
Predicted transcriptional regulator protein	K	BX950229	MMP0278	COG3620	44	5e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0278	COG2524	65	2e-12
Predicted transcriptional regulator protein	K	BX950229	MMP0287	COG3620	37	0.001
Predicted transcriptional regulator protein	K	BX950229	MMP0287	COG1475	39	3e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0287	COG2524	61	1e-10
Predicted transcriptional regulator protein	K	BX950229	MMP0402	COG2345	39	6e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0407	COG3620	46	9e-07
Predicted transcriptional regulator protein	K	BX950229	MMP0407	COG2524	91	3e-20
Predicted transcriptional regulator protein	K	BX950229	MMP0420	COG3620	53	2e-08
Predicted transcriptional regulator protein	K	BX950229	MMP0420	COG2524	64	1e-11
Predicted transcriptional regulator protein	K	BX950229	MMP0453	COG3620	81	9e-17
Predicted transcriptional regulator protein	K	BX950229	MMP0453	COG2524	75	9e-15
Predicted transcriptional regulator protein	K	BX950229	MMP0460	COG0640	36	0.008
Predicted transcriptional regulator protein	K	BX950229	MMP0460	COG3355	37	0.003
Predicted transcriptional regulator protein	K	BX950229	MMP0460	COG2865	281	6e-77
Predicted transcriptional regulator protein	K	BX950229	MMP0465	COG1733	33	0.004
Predicted transcriptional regulator protein	K	BX950229	MMP0480	COG1733	46	4e-07
Predicted transcriptional regulator protein	K	BX950229	MMP0568	COG1396	35	0.003
Predicted transcriptional regulator protein	K	BX950229	MMP0568	COG1476	34	0.006
Predicted transcriptional regulator protein	K	BX950229	MMP0629	COG3355	39	1e-04
Predicted transcriptional regulator protein	K	BX950229	MMP0637	COG0640	46	2e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0637	COG1777	40	7e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0674	COG3620	33	0.004
Predicted transcriptional regulator protein	K	BX950229	MMP0674	COG1476	81	1e-17
Predicted transcriptional regulator protein	K	BX950229	MMP0678	COG1395	229	2e-61
Predicted transcriptional regulator protein	K	BX950229	MMP0678	COG1476	41	9e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0700	COG1695	56	2e-09
Predicted transcriptional regulator protein	K	BX950229	MMP0752	COG1733	45	1e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0863	COG3620	35	0.003
Predicted transcriptional regulator protein	K	BX950229	MMP0863	COG2524	43	8e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0907	COG3355	109	9e-26
Predicted transcriptional regulator protein	K	BX950229	MMP0908	COG3620	45	2e-06
Predicted transcriptional regulator protein	K	BX950229	MMP0908	COG2524	73	7e-15
Predicted transcriptional regulator protein	K	BX950229	MMP0993	COG3620	40	4e-05
Predicted transcriptional regulator protein	K	BX950229	MMP0993	COG1476	86	5e-19
Predicted transcriptional regulator protein	K	BX950229	MMP1016	COG3620	53	5e-08
Predicted transcriptional regulator protein	K	BX950229	MMP1016	COG2524	87	2e-18
Predicted transcriptional regulator protein	K	BX950229	MMP1052	COG2345	38	8e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1052	COG1497	243	1e-65
Predicted transcriptional regulator protein	K	BX950229	MMP1065	COG1725	34	0.005
Predicted transcriptional regulator protein	K	BX950229	MMP1065	COG1959	38	4e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1065	COG2345	35	0.002
Predicted transcriptional regulator protein	K	BX950229	MMP1100	COG3355	40	7e-05
Predicted transcriptional regulator protein	K	BX950229	MMP1100	COG2345	37	6e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1100	COG1378	38	2e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1152	COG3620	45	2e-06
Predicted transcriptional regulator protein	K	BX950229	MMP1152	COG2524	45	1e-06
Predicted transcriptional regulator protein	K	BX950229	MMP1160	COG3357	32	0.008
Predicted transcriptional regulator protein	K	BX950229	MMP1210	COG1709	285	2e-78
Predicted transcriptional regulator protein	K	BX950229	MMP1251	COG3620	45	2e-06
Predicted transcriptional regulator protein	K	BX950229	MMP1251	COG2524	66	1e-12
Predicted transcriptional regulator protein	K	BX950229	MMP1252	COG3620	64	1e-11
Predicted transcriptional regulator protein	K	BX950229	MMP1252	COG2524	72	6e-14
Predicted transcriptional regulator protein	K	BX950229	MMP1359	COG3620	53	4e-08
Predicted transcriptional regulator protein	K	BX950229	MMP1359	COG2524	84	3e-17
Predicted transcriptional regulator protein	K	BX950229	MMP1442	COG0640	68	1e-13
Predicted transcriptional regulator protein	K	BX950229	MMP1447	COG2944	35	0.004
Predicted transcriptional regulator protein	K	BX950229	MMP1447	COG1396	36	0.002
Predicted transcriptional regulator protein	K	BX950229	MMP1447	COG3620	43	2e-05
Predicted transcriptional regulator protein	K	BX950229	MMP1447	COG1709	34	0.007
Predicted transcriptional regulator protein	K	BX950229	MMP1447	COG1476	34	0.008
Predicted transcriptional regulator protein	K	BX950229	MMP1466	COG3620	38	5e-04
Predicted transcriptional regulator protein	K	BX950229	MMP1466	COG2524	65	4e-12
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	BX950229	MMP0020	COG0864	159	7e-41
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	BX950229	MMP0719	COG0864	96	7e-22
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	BX950229	MMP0020	COG3609	40	8e-05
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	BX950229	MMP0719	COG3609	42	1e-05
Putative stress-responsive transcriptional regulator protein	K	BX950229	MMP1376	COG1983	76	7e-16
Transcriptional regulator	K	BX950229	MMP0018	COG0583	53	2e-08
Transcriptional regulator	K	BX950229	MMP0402	COG1414	41	2e-04
Transcriptional regulator	K	BX950229	MMP0527	COG1414	39	3e-04
Transcriptional regulator	K	BX950229	MMP0637	COG1414	40	9e-05
Transcriptional regulator	K	BX950229	MMP0791	COG1309	78	5e-16
Transcriptional regulator	K	BX950229	MMP0799	COG1309	80	1e-16
Transcriptional regulator	K	BX950229	MMP0840	COG1309	70	1e-13
Transcriptional regulator	K	BX950229	MMP1023	COG1309	63	2e-11
Transcriptional regulator	K	BX950229	MMP1712	COG0583	169	2e-43
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	BX950229	MMP1186	COG3604	36	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	BX950229	MMP1186	COG3829	36	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	BX950229	MMP1647	COG3829	44	2e-05
Transcriptional regulator contains sigma factor-related N-terminal domain	K	BX950229	MMP0086	COG2390	33	0.008
Transcriptional regulator contains sigma factor-related N-terminal domain	K	BX950229	MMP0402	COG2390	36	0.007
Transcriptional regulator contains sigma factor-related N-terminal domain	K	BX950229	MMP1199	COG2390	37	0.001
Transcriptional regulator of a riboflavin/FAD biosynthetic operon	K	BX950229	MMP0184	COG1339	115	1e-27
Transcriptional regulator of a riboflavin/FAD biosynthetic operon	K	BX950229	MMP1060	COG1339	35	0.009
Transcriptional regulators	K	BX950229	MMP0402	COG1846	38	0.001
Transcriptional regulators	K	BX950229	MMP0402	COG1522	39	8e-04
Transcriptional regulators	K	BX950229	MMP0460	COG1522	44	2e-05
Transcriptional regulators	K	BX950229	MMP0527	COG1846	37	0.001
Transcriptional regulators	K	BX950229	MMP0527	COG1522	35	0.005
Transcriptional regulators	K	BX950229	MMP0637	COG1846	36	0.001
Transcriptional regulators	K	BX950229	MMP0787	COG1846	55	4e-09
Transcriptional regulators	K	BX950229	MMP1137	COG1522	105	1e-24
Transcriptional regulators	K	BX950229	MMP1298	COG1737	38	0.002
Transcriptional regulators	K	BX950229	MMP1680	COG1737	67	3e-12
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP0096	COG1167	388	1.0e-109
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP0351	COG1167	40	2e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP1072	COG1167	145	7e-36
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP1216	COG1167	103	2e-23
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP1396	COG1167	94	2e-20
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP1527	COG1167	109	3e-25
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	BX950229	MMP1574	COG1167	40	3e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	BX950229	MMP0470	COG1221	38	0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	BX950229	MMP0748	COG1221	38	0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	BX950229	MMP1647	COG1221	35	0.008
Transcriptional regulators of sugar metabolism	K	BX950229	MMP0402	COG1349	38	0.001
Transcriptional regulators of sugar metabolism	K	BX950229	MMP0460	COG1349	46	5e-06
Transcriptional regulators of sugar metabolism	K	BX950229	MMP0527	COG1349	37	0.001
Transcriptional regulators of sugar metabolism	K	BX950229	MMP1137	COG1349	33	0.008
Transcriptional regulators of sugar metabolism	K	BX950229	MMP1189	COG1349	35	0.005

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription elongation factor	K	BX950229	MMP1434	COG5164	35	0.003
Transcription-repair coupling factor (superfamily II helicase)	K	BX950229	MMP0457	COG1197	52	1e-07
Transcription-repair coupling factor (superfamily II helicase)	K	BX950229	MMP0727	COG1197	140	3e-34
Transcription-repair coupling factor (superfamily II helicase)	K	BX950229	MMP0890	COG1197	37	0.004
Transcription-repair coupling factor (superfamily II helicase)	K	BX950229	MMP1284	COG1197	41	3e-04
Transcription-repair coupling factor (superfamily II helicase)	K	BX950229	MMP1395	COG1197	38	0.003

SiteMap Feedback Life Sciences Division ORNL Disclaimer Webmaster