Genome Channel

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CREDITS:

Annotation created through the use of the following tools:

Gene Models: Critica, Glimmer, and Generation
tRNAs: tRNAscan-SE
Gene Model products and functional assignments aided through the use of NCBI Blast, KEGG, COGs, InterPro, Pfam and TIGRfam
TMHMM transmembrane prediction and Signal-P finding
Transporters
Visualiztion aided by Artemis

Methanococcus maripaludis strain S2 complete genome sequence and annotation.

April 14, 2004 updated EMBL release File BX950229
View in WebArtemis
Multiple FASTA file of annotated peptides.
Most Frequent InterPro and Pfam domains
Metabolic Pathway
Taxonomic Distribution
Genes Organized by Replicon
Genes grouped by COGs category
Statistics
- Bases: 1,661,137
- CDS features: 1,722
- Bases in CDS features: 1,477,335
- Density: 1.036 genes per kb
- Average length: 857
- Coding percentage: 88.9
- Percent GC: 33.1
- tRNA 38
- rRNA operons: 3
Circular Map of Chromosome (pdf)

Blast against the genome

Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis
E. L. Hendrickson, R. Kaul, Y. Zhou, D. Bovee, P. Chapman, J. Chung, E. Conway de Macario, J. Dodsworth, W. Gillett, D. E. Graham, M. Hackett, A. K. Haydock, A. Kang, M. L. Land, R. Levy, T. J. Lie, T. Major, B. Moore, I. Porat, A. Palmeiri, G. Rouse, C. Saenphimmachak, D. Soll, S. Van Dien, T. Wang, W. B. Whitman, Q. Xia, Y. Zhang, F. W. Larimer, M. V. Olson, and J. A. Leigh

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