Intracellular trafficking and secretion

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci30100	COG1157	34	0.009
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci30723	COG1157	35	0.010
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci33570	COG1157	36	0.002
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci33707	COG1157	214	1e-56
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci33709	COG1157	207	1e-54
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig773	Francci33722	COG1157	108	1e-24
Predicted ATPase involved in biogenesis of flagella	U	Contig773	Francci34258	COG2874	42	9e-05

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci30773	COG4963	72	6e-14
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci31450	COG4963	45	1e-05
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci32748	COG4963	35	0.006
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci33472	COG4963	45	1e-05
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci33810	COG4963	55	5e-09
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci34296	COG4963	42	9e-05
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci34411	COG4963	51	4e-07
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci34507	COG4963	37	0.002
Flp pilus assembly protein ATPase CpaE	U	Contig773	Francci34541	COG4963	43	3e-05
Flp pilus assembly protein ATPase CpaF	U	Contig773	Francci30779	COG4962	268	5e-73
Flp pilus assembly protein ATPase CpaF	U	Contig773	Francci31736	COG4962	236	3e-63
Flp pilus assembly protein ATPase CpaF	U	Contig773	Francci33332	COG4962	161	1e-40
Flp pilus assembly protein ATPase CpaF	U	Contig773	Francci34297	COG4962	307	1e-84
Flp pilus assembly protein TadB	U	Contig773	Francci30780	COG4965	66	3e-12
Flp pilus assembly protein TadB	U	Contig773	Francci30781	COG4965	56	4e-09
Flp pilus assembly protein TadB	U	Contig773	Francci31734	COG4965	42	6e-05
Flp pilus assembly protein TadB	U	Contig773	Francci31735	COG4965	51	1e-07
Flp pilus assembly protein TadB	U	Contig773	Francci33330	COG4965	40	2e-04
Flp pilus assembly protein TadB	U	Contig773	Francci34298	COG4965	60	3e-10
Flp pilus assembly protein TadC	U	Contig773	Francci30780	COG2064	36	0.003
Flp pilus assembly protein TadC	U	Contig773	Francci30781	COG2064	48	1e-06
Flp pilus assembly protein TadG	U	Contig773	Francci30783	COG4961	40	1e-04
Flp pilus assembly protein TadG	U	Contig773	Francci31732	COG4961	33	0.008
Flp pilus assembly protein TadG	U	Contig773	Francci33329	COG4961	44	2e-05
Flp pilus assembly protein TadG	U	Contig773	Francci34299	COG4961	35	0.005
Lipoprotein signal peptidase	U	Contig773	Francci31425	COG0597	119	2e-28
Membrane protein implicated in regulation of membrane protease activity	U	Contig773	Francci31351	COG1585	81	2e-17
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci30276	COG0823	37	0.006
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci30322	COG0823	55	3e-08
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci30727	COG0823	51	3e-07
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci30948	COG0823	89	2e-18
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci32909	COG0823	47	5e-06
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci33395	COG0823	47	7e-06
Periplasmic component of the Tol biopolymer transport system	U	Contig773	Francci34047	COG0823	44	4e-05
Periplasmic serine protease (ClpP class)	U	Contig773	Francci31205	COG0616	42	2e-05
Periplasmic serine protease (ClpP class)	U	Contig773	Francci31206	COG0616	41	7e-05
Periplasmic serine protease (ClpP class)	U	Contig773	Francci32455	COG0616	37	0.002
Periplasmic serine protease (ClpP class)	U	Contig773	Francci32773	COG0616	39	3e-04
Periplasmic serine protease (ClpP class)	U	Contig773	Francci32774	COG0616	42	4e-05
Periplasmic serine protease (ClpP class)	U	Contig773	Francci33924	COG0616	183	3e-47
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig773	Francci33584	COG0758	236	3e-63
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig773	Francci33841	COG0758	35	0.006
Preprotein translocase subunit Sec63	U	Contig773	Francci30339	COG5407	36	0.002
Preprotein translocase subunit Sec63	U	Contig773	Francci31265	COG5407	55	1e-08
Preprotein translocase subunit Sec63	U	Contig773	Francci32171	COG5407	61	1e-10
Preprotein translocase subunit Sec63	U	Contig773	Francci34354	COG5407	56	6e-09

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig773	Francci30767	COG0653	1041	0.0
Preprotein translocase subunit SecD	U	Contig773	Francci30816	COG0342	52	2e-07
Preprotein translocase subunit SecD	U	Contig773	Francci31373	COG0342	249	3e-67
Preprotein translocase subunit SecD	U	Contig773	Francci31374	COG0342	55	1e-08
Preprotein translocase subunit SecD	U	Contig773	Francci31537	COG0342	49	1e-06
Preprotein translocase subunit SecD	U	Contig773	Francci32666	COG0342	45	3e-05
Preprotein translocase subunit SecD	U	Contig773	Francci33234	COG0342	38	0.004
Preprotein translocase subunit SecD	U	Contig773	Francci34060	COG0342	50	8e-07
Preprotein translocase subunit SecD	U	Contig773	Francci34078	COG0342	41	3e-04
Preprotein translocase subunit SecD	U	Contig773	Francci34453	COG0342	48	3e-06
Preprotein translocase subunit SecE	U	Contig773	Francci30567	COG0690	48	2e-07
Preprotein translocase subunit SecF	U	Contig773	Francci31373	COG0341	75	2e-14
Preprotein translocase subunit SecF	U	Contig773	Francci31374	COG0341	244	9e-66
Preprotein translocase subunit SecF	U	Contig773	Francci31537	COG0341	40	8e-04
Preprotein translocase subunit SecF	U	Contig773	Francci34453	COG0341	48	3e-06
Preprotein translocase subunit SecG	U	Contig773	Francci31640	COG1314	39	9e-05
Preprotein translocase subunit SecY	U	Contig773	Francci30602	COG0201	376	1.0e-105
Preprotein translocase subunit YajC	U	Contig773	Francci31372	COG1862	73	1e-14
Preprotein translocase subunit YidC	U	Contig773	Francci34545	COG0706	164	9e-42

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	Contig773	Francci31205	COG0740	250	5e-68
Protease subunit of ATP-dependent Clp protease	U	Contig773	Francci31206	COG0740	257	4e-70
Protease subunit of ATP-dependent Clp protease	U	Contig773	Francci32773	COG0740	252	2e-68
Protease subunit of ATP-dependent Clp protease	U	Contig773	Francci32774	COG0740	240	9e-65
Sec-independent protein secretion pathway components	U	Contig773	Francci32305	COG1826	61	2e-11
Sec-independent protein secretion pathway components	U	Contig773	Francci32607	COG1826	60	4e-11
Sec-independent protein secretion pathway components	U	Contig773	Francci33829	COG1826	62	2e-11
Sec-independent protein secretion pathway component TatC	U	Contig773	Francci32606	COG0805	210	1e-55
Signal peptidase I	U	Contig773	Francci33589	COG0681	61	1e-10
Signal recognition particle GTPase	U	Contig773	Francci30241	COG0552	34	0.005
Signal recognition particle GTPase	U	Contig773	Francci31450	COG0541	41	1e-04
Signal recognition particle GTPase	U	Contig773	Francci32170	COG0552	35	0.008
Signal recognition particle GTPase	U	Contig773	Francci32170	COG0541	35	0.008
Signal recognition particle GTPase	U	Contig773	Francci33004	COG0552	36	0.004
Signal recognition particle GTPase	U	Contig773	Francci33472	COG0541	37	0.004
Signal recognition particle GTPase	U	Contig773	Francci33595	COG0552	211	9e-56
Signal recognition particle GTPase	U	Contig773	Francci33595	COG0541	565	1.0e-162
Signal recognition particle GTPase	U	Contig773	Francci33596	COG0552	350	1e-97
Signal recognition particle GTPase	U	Contig773	Francci33596	COG0541	238	7e-64
Signal recognition particle GTPase	U	Contig773	Francci34279	COG0541	37	0.002
Tfp pilus assembly protein ATPase PilM	U	Contig773	Francci31211	COG4972	50	4e-07
Tfp pilus assembly protein ATPase PilU	U	Contig773	Francci30779	COG5008	47	2e-06
Tfp pilus assembly protein ATPase PilU	U	Contig773	Francci31736	COG5008	48	1e-06
Tfp pilus assembly protein ATPase PilU	U	Contig773	Francci33332	COG5008	35	0.008
Tfp pilus assembly protein ATPase PilU	U	Contig773	Francci34297	COG5008	65	1e-11
Tfp pilus assembly protein FimV	U	Contig773	Francci30531	COG3170	36	0.006
Tfp pilus assembly protein FimV	U	Contig773	Francci32931	COG3170	39	0.004
Tfp pilus assembly protein FimV	U	Contig773	Francci33327	COG3170	49	2e-06
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig773	Francci30779	COG2805	41	2e-04
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig773	Francci31736	COG2805	49	6e-07
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig773	Francci33332	COG2805	40	4e-04
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig773	Francci34297	COG2805	63	5e-11
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig773	Francci30779	COG2804	55	1e-08
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig773	Francci31736	COG2804	63	5e-11
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig773	Francci33332	COG2804	44	2e-05
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig773	Francci34297	COG2804	75	7e-15
Type II secretory pathway component PulF	U	Contig773	Francci30074	COG1459	35	0.008
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig773	Francci33210	COG1989	47	1e-06
Type IV secretory pathway protease TraF	U	Contig773	Francci33589	COG4959	42	7e-05
Type IV secretory pathway TrbL protein	U	Contig773	Francci31218	COG3846	40	0.001
Type IV secretory pathway TrbL protein	U	Contig773	Francci33493	COG3846	40	4e-04
Type IV secretory pathway TrbL protein	U	Contig773	Francci33623	COG3846	37	0.004
Type IV secretory pathway VirB10 protein	U	Contig773	Francci33135	COG2948	42	1e-04
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig773	Francci30379	COG0630	38	0.003
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig773	Francci30779	COG0630	193	2e-50
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig773	Francci31736	COG0630	173	2e-44
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig773	Francci33332	COG0630	99	8e-22
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig773	Francci34297	COG0630	203	2e-53
Type IV secretory pathway VirB4 protein	U	Contig773	Francci30034	COG3451	64	4e-11
Type IV secretory pathway VirB4 protein	U	Contig773	Francci30138	COG3451	37	0.004
Type IV secretory pathway VirB4 protein	U	Contig773	Francci30379	COG3451	43	8e-05
Type IV secretory pathway VirB4 protein	U	Contig773	Francci30798	COG3451	37	0.001
Type IV secretory pathway VirB4 protein	U	Contig773	Francci31693	COG3451	114	2e-26
Type IV secretory pathway VirB4 protein	U	Contig773	Francci33322	COG3451	50	4e-07
Type IV secretory pathway VirD4 protein	U	Contig773	Francci30906	COG3505	68	2e-12
Type IV secretory pathway VirD4 protein	U	Contig773	Francci31694	COG3505	63	9e-11
Type IV secretory pathway VirD4 protein	U	Contig773	Francci32361	COG3505	123	5e-29
Type IV secretory pathway VirD4 protein	U	Contig773	Francci33305	COG3505	122	7e-29

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