files

Summary of the tRNAs found by tRNAscan-se

Amino Acid	Count
Ala	5
Arg	5
Asn	3
Asp	3
Cys	1
Gln	2
Glu	4
Gly	6
His	2
Ile	3
Leu	6
Lys	3
Met	6
Phe	2
Pro	2
Pseudo	0
Ser	5
Thr	4
Trp	1
Tyr	2
Undet	0
Val	4

List of tRNAs found by tRNAscan-se

Amino Acid	Anticodon	Contig	tRNA	tRNA Location	Intron Location	Cove Score	HMM Score
Ala	GGC	Contig392	65	2771479..2771407	0..0	73.69	56.66
Ala	TGC	Contig392	15	37438 ..37510	0..0	85.62	68.43
Ala	TGC	Contig392	23	87864 ..87939	0..0	93.92	76.70
Ala	TGC	Contig392	25	148951 ..149023	0..0	85.62	68.43
Ala	TGC	Contig392	32	152759 ..152834	0..0	93.92	76.70
Arg	ACG	Contig392	12	35416 ..35489	0..0	78.23	55.40
Arg	ACG	Contig392	21	87687 ..87760	0..0	78.23	55.40
Arg	ACG	Contig392	61	2789469..2789393	0..0	86.53	63.67
Arg	CCG	Contig392	52	2361560..2361635	0..0	73.57	50.24
Arg	TCT	Contig392	66	2112119..2112043	0..0	81.97	59.73
Asn	GTT	Contig392	26	152236 ..152310	0..0	92.45	66.02
Asn	GTT	Contig392	35	703963 ..704037	0..0	92.45	66.02
Asn	GTT	Contig392	53	2790234..2790160	0..0	92.45	66.02
Asp	GTC	Contig392	39	704348 ..704423	0..0	81.58	60.91
Asp	GTC	Contig392	4	34663 ..34738	0..0	81.58	60.91
Asp	GTC	Contig392	57	2789822..2789747	0..0	81.58	60.91
Cys	GCA	Contig392	46	704948 ..705021	0..0	77.10	45.96
Gln	TTG	Contig392	44	704787 ..704858	0..0	65.42	40.18
Gln	TTG	Contig392	58	2789742..2789671	0..0	65.42	40.18
Glu	TTC	Contig392	17	67460 ..67531	0..0	69.21	44.16
Glu	TTC	Contig392	27	152313 ..152387	0..0	79.45	52.63
Glu	TTC	Contig392	37	704177 ..704251	0..0	77.51	52.44
Glu	TTC	Contig392	55	2790011..2789937	0..0	79.45	52.63
Gly	GCC	Contig392	10	35215 ..35289	0..0	87.53	63.22
Gly	GCC	Contig392	31	152674 ..152745	0..0	79.24	54.94
Gly	GCC	Contig392	45	704867 ..704941	0..0	87.53	63.22
Gly	TCC	Contig392	48	705142 ..705212	0..0	68.53	48.16
Gly	TCC	Contig392	49	705253 ..705323	0..0	65.72	42.58
Gly	TCC	Contig392	69	610058 ..609985	0..0	74.02	50.85
His	GTG	Contig392	43	704704 ..704776	0..0	68.09	46.81
His	GTG	Contig392	7	34936 ..35011	0..0	74.63	58.01
Ile	GAT	Contig392	14	37343 ..37419	0..0	101.60	80.33
Ile	GAT	Contig392	24	148856 ..148932	0..0	101.60	80.33
Ile	GAT	Contig392	62	2789373..2789297	0..0	101.60	80.33
Leu	CAA	Contig392	47	705057 ..705137	0..0	64.22	36.80
Leu	CAG	Contig392	68	1668592..1668509	0..0	65.51	38.34
Leu	GAG	Contig392	11	35325 ..35407	0..0	58.39	26.25
Leu	GAG	Contig392	60	2789559..2789474	0..0	66.69	34.52
Leu	TAA	Contig392	20	87570 ..87656	0..0	78.09	52.62
Leu	TAG	Contig392	9	35121 ..35204	0..0	74.20	52.01
Lys	TTT	Contig392	30	152595 ..152667	0..0	91.67	67.96
Lys	TTT	Contig392	59	2789664..2789589	0..0	99.07	73.79
Lys	TTT	Contig392	8	35036 ..35111	0..0	99.07	73.79
Met	CAT	Contig392	16	67374 ..67450	0..0	80.34	70.78
Met	CAT	Contig392	38	704263 ..704336	0..0	77.32	51.37
Met	CAT	Contig392	50	911389 ..911465	0..0	72.66	63.10
Met	CAT	Contig392	51	911474 ..911547	0..0	85.96	61.47
Met	CAT	Contig392	63	2784189..2784113	0..0	85.61	59.65
Met	CAT	Contig392	64	2784079..2784003	0..0	85.61	59.65
Phe	GAA	Contig392	40	704431 ..704506	0..0	90.00	64.88
Phe	GAA	Contig392	5	34766 ..34841	0..0	90.00	64.88
Pro	TGG	Contig392	13	35495 ..35571	0..0	95.15	73.12
Pro	TGG	Contig392	22	87766 ..87842	0..0	95.15	73.12
Ser	CGA	Contig392	3	23539 ..23628	0..0	61.06	27.77
Ser	GCT	Contig392	54	2790151..2790060	0..0	71.85	41.86
Ser	GGA	Contig392	36	704064 ..704154	0..0	61.24	25.40
Ser	TGA	Contig392	1	23287 ..23377	0..0	75.99	41.86
Ser	TGA	Contig392	2	23413 ..23503	0..0	75.99	41.86
Thr	GGT	Contig392	67	1693801..1693728	0..0	54.54	21.53
Thr	TGT	Contig392	19	87433 ..87508	0..0	92.72	82.33
Thr	TGT	Contig392	28	152400 ..152472	0..0	84.42	74.06
Thr	TGT	Contig392	6	34850 ..34925	0..0	92.72	82.33
Trp	CCA	Contig392	42	704623 ..704693	0..0	65.03	42.54
Tyr	GTA	Contig392	29	152507 ..152590	0..0	84.07	57.21
Tyr	GTA	Contig392	41	704535 ..704618	0..0	84.07	57.21
Val	GAC	Contig392	33	548734 ..548806	0..0	71.76	43.00
Val	GAC	Contig392	34	559237 ..559309	0..0	71.76	43.00
Val	TAC	Contig392	18	87341 ..87416	0..0	95.52	75.81
Val	TAC	Contig392	56	2789932..2789857	0..0	95.52	75.81

tRNA Models

Contig392.trna1 (23287-23377)	Length: 91 bp
Type: Ser	Anticodon: TGA at 35-37 (23321-23323)	Score: 75.99
HMM Sc=41.86	Sec struct Sc=34.13
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGGCGTACTCAAGTGGTttAAGAGAACGGTCTTGAAAACCGTCAGGCGGCGAAAGCCGTGCGTGGGTTCGAATCCCACCGCCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig392.trna2 (23413-23503)	Length: 91 bp
Type: Ser	Anticodon: TGA at 35-37 (23447-23449)	Score: 75.99
HMM Sc=41.86	Sec struct Sc=34.13
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGGCGTACTCAAGTGGTttAAGAGAACGGTCTTGAAAACCGTCAGGCGGCGAAAGCCGTGCGTGGGTTCGAATCCCACCGCCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig392.trna3 (23539-23628)	Length: 90 bp
Type: Ser	Anticodon: CGA at 37-39 (23575-23577)	Score: 61.06
HMM Sc=27.77	Sec struct Sc=33.29
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    
Seq: GGAGTCGTACCCAAGCCcGGCtgAAGGGGACGGACTCGAAATCCGTTAGGGGTCGCAAGGCCCGCGTGGGTTCGAATCCCACCGACTCCG
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

Contig392.trna4 (34663-34738)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (34696-34698)	Score: 81.58
HMM Sc=60.91	Sec struct Sc=20.67
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTCCTGTGGTGTAGCGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAATCCCGTCAGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna5 (34766-34841)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (34799-34801)	Score: 90.00
HMM Sc=64.88	Sec struct Sc=25.12
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCTTTGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCGGTTCGATTCCGTCCAAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna6 (34850-34925)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (34883-34885)	Score: 92.72
HMM Sc=82.33	Sec struct Sc=10.39
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGGTGTAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGtCGCGGGTTCGACTCCTGTTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna7 (34936-35011)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (34969-34971)	Score: 74.63
HMM Sc=58.01	Sec struct Sc=16.62
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCGGATTGTGATTCCGGCATtCGTGGGTTCAATTCCCATCAGTCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna8 (35036-35111)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (35069-35071)	Score: 99.07
HMM Sc=73.79	Sec struct Sc=25.28
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGTCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGCAGGTTCGAATCCTGCATGACACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna9 (35121-35204)	Length: 84 bp
Type: Leu	Anticodon: TAG at 35-37 (35155-35157)	Score: 74.20
HMM Sc=52.01	Sec struct Sc=22.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTGTGGCGGAATTGGTaGACGCGCTAGATTTAGGATCTAGTGTCTTTGACGTGGGGGTTCAAGTCCCTTCACCCGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<....

Contig392.trna10 (35215-35289)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (35247-35249)	Score: 87.53
HMM Sc=63.22	Sec struct Sc=24.31
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGAAGTAGTTCAGTGGTAGAATACGACCTTGCCAAGGTCGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna11 (35325-35407)	Length: 83 bp
Type: Leu	Anticodon: GAG at 34-36 (35358-35360)	Score: 58.39
HMM Sc=26.25	Sec struct Sc=32.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCGGTCGTGGCGGAATGGTaGACGCGCTAGGTTGAGGGCCTAGTGGTGGCAACACTgTGGAGGTTCAAGTCCTCTCGACCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

Contig392.trna12 (35416-35489)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (35450-35452)	Score: 78.23
HMM Sc=55.40	Sec struct Sc=22.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGGGtCGGGAGTTCGAATCTCTCAGGGTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna13 (35495-35571)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (35529-35531)	Score: 95.15
HMM Sc=73.12	Sec struct Sc=22.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCGAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna14 (37343-37419)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (37377-37379)	Score: 101.60
HMM Sc=80.33	Sec struct Sc=21.27
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna15 (37438-37510)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (37471-37473)	Score: 85.62
HMM Sc=68.43	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna16 (67374-67450)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (67408-67410)	Score: 80.34
HMM Sc=70.78	Sec struct Sc=9.56
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGTGGGTTCGACTCCCTCCGCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

Contig392.trna17 (67460-67531)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (67493-67495)	Score: 69.21
HMM Sc=44.16	Sec struct Sc=25.05
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGATTCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig392.trna18 (87341-87416)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (87374-87376)	Score: 95.52
HMM Sc=75.81	Sec struct Sc=19.71
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna19 (87433-87508)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (87466-87468)	Score: 92.72
HMM Sc=82.33	Sec struct Sc=10.39
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGGTGTAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGtCGCGGGTTCGACTCCTGTTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna20 (87570-87656)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (87604-87606)	Score: 78.09
HMM Sc=52.62	Sec struct Sc=25.47
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCCGGGGTGGCGGAACTGGTaGACGCACAGGACTTAAAATCCTGCGGGGGTTTCCCCGTGCCGGTTCGATTCCGGCCCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

Contig392.trna21 (87687-87760)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (87721-87723)	Score: 78.23
HMM Sc=55.40	Sec struct Sc=22.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGGGtCGGGAGTTCGAATCTCTCAGGGTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna22 (87766-87842)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (87800-87802)	Score: 95.15
HMM Sc=73.12	Sec struct Sc=22.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCGAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna23 (87864-87939)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (87897-87899)	Score: 93.92
HMM Sc=76.70	Sec struct Sc=17.22
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna24 (148856-148932)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (148890-148892)	Score: 101.60
HMM Sc=80.33	Sec struct Sc=21.27
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna25 (148951-149023)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (148984-148986)	Score: 85.62
HMM Sc=68.43	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna26 (152236-152310)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (152268-152270)	Score: 92.45
HMM Sc=66.02	Sec struct Sc=26.43
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCAATAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCAAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna27 (152313-152387)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (152346-152348)	Score: 79.45
HMM Sc=52.63	Sec struct Sc=26.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAtCACGGGTTCGATTCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig392.trna28 (152400-152472)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (152433-152435)	Score: 84.42
HMM Sc=74.06	Sec struct Sc=10.36
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCCGGTGTAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGtCGCGGGTTCGACTCCTGTTGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna29 (152507-152590)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (152541-152543)	Score: 84.07
HMM Sc=57.21	Sec struct Sc=26.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGGGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCGGGTtCGGCGGTTCGAATCCGCCCCCCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..<<<...>>>>>.......<<<<<<<<<<<<....

Contig392.trna30 (152595-152667)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (152628-152630)	Score: 91.67
HMM Sc=67.96	Sec struct Sc=23.71
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGCAGGTTCGAATCCTGCATGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna31 (152674-152745)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (152706-152708)	Score: 79.24
HMM Sc=54.94	Sec struct Sc=24.30
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGGAAGTAGTTCAGTGGTAGAATACGACCTTGCCAAGGTCGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna32 (152759-152834)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (152792-152794)	Score: 93.92
HMM Sc=76.70	Sec struct Sc=17.22
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna33 (548734-548806)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (548767-548769)	Score: 71.76
HMM Sc=43.00	Sec struct Sc=28.76
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GATTCTGTAGCTCAGCTGGGAGAGCGCTACCTTGACAGGGTAGAGGtCGCTGGTTCGAGCCCAGTCAGAATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna34 (559237-559309)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (559270-559272)	Score: 71.76
HMM Sc=43.00	Sec struct Sc=28.76
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GATTCTGTAGCTCAGCTGGGAGAGCGCTACCTTGACAGGGTAGAGGtCGCTGGTTCGAGCCCAGTCAGAATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna35 (703963-704037)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (703995-703997)	Score: 92.45
HMM Sc=66.02	Sec struct Sc=26.43
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCAATAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCAAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna36 (704064-704154)	Length: 91 bp
Type: Ser	Anticodon: GGA at 35-37 (704098-704100)	Score: 61.24
HMM Sc=25.40	Sec struct Sc=35.84
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGAGCTGTCCGAGTGGCcgAAGGAGCACGATTGGAAATCGTGTAGGCGTCATAAGCGTCTCAAGGGTTCGAATCCCTTGCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....

Contig392.trna37 (704177-704251)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (704210-704212)	Score: 77.51
HMM Sc=52.44	Sec struct Sc=25.07
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGATTCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig392.trna38 (704263-704336)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (704297-704299)	Score: 77.32
HMM Sc=51.37	Sec struct Sc=25.95
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTTGGGCTCATAACCCAAAGGtCGTCGGTTCAAATCCGGCCCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

Contig392.trna39 (704348-704423)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (704381-704383)	Score: 81.58
HMM Sc=60.91	Sec struct Sc=20.67
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTCCTGTGGTGTAGCGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAATCCCGTCAGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna40 (704431-704506)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (704464-704466)	Score: 90.00
HMM Sc=64.88	Sec struct Sc=25.12
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCTTTGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCGGTTCGATTCCGTCCAAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna41 (704535-704618)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (704569-704571)	Score: 84.07
HMM Sc=57.21	Sec struct Sc=26.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGGGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCGGGTtCGGCGGTTCGAATCCGCCCCCCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..<<<...>>>>>.......<<<<<<<<<<<<....

Contig392.trna42 (704623-704693)	Length: 71 bp
Type: Trp	Anticodon: CCA at 33-35 (704655-704657)	Score: 65.03
HMM Sc=42.54	Sec struct Sc=22.49
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: AGGGGCATAGTTTAGCGGTAGAACTACGGTCTCCAAAACCGTCAGCGCGGGTTCGATTCCTGCTGCCCCTG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig392.trna43 (704704-704776)	Length: 73 bp
Type: His	Anticodon: GTG at 34-36 (704737-704739)	Score: 68.09
HMM Sc=46.81	Sec struct Sc=21.28
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCGATTGTGGCGAAGTGGTtAACGCACCGGATTGTGATTCCGGCATtCGTGGGTTCAATTCCCATCAGTCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna44 (704787-704858)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (704819-704821)	Score: 65.42
HMM Sc=40.18	Sec struct Sc=25.24
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: TGGGCTGTGGCCAAGTGGTAAGGCACTGGATTTTGATTCCAGCATgCGAAGGTTCGATCCCTTCCAGCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna45 (704867-704941)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (704899-704901)	Score: 87.53
HMM Sc=63.22	Sec struct Sc=24.31
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGAAGTAGTTCAGTGGTAGAATACGACCTTGCCAAGGTCGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna46 (704948-705021)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (704980-704982)	Score: 77.10
HMM Sc=45.96	Sec struct Sc=31.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGCGCCATAGCCAAGTGGTAAGGCAGAGGACTGCAACTCCTCTAtCGTCAGTTCGATTCTGACTGGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig392.trna47 (705057-705137)	Length: 81 bp
Type: Leu	Anticodon: CAA at 35-37 (705091-705093)	Score: 64.22
HMM Sc=36.80	Sec struct Sc=27.42
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GCCGGTGTGGCGGAACTGGTaGACGCGCACGACTCAAAATCGTGTTCCTTTGGAGTGTCGGTTCGATTCCGACCACCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<.

Contig392.trna48 (705142-705212)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (705174-705176)	Score: 68.53
HMM Sc=48.16	Sec struct Sc=20.37
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGAGGGTTCGATTCCCTTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig392.trna49 (705253-705323)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (705285-705287)	Score: 65.72
HMM Sc=42.58	Sec struct Sc=23.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGAGAGTTCGATTCTCTTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig392.trna50 (911389-911465)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (911423-911425)	Score: 72.66
HMM Sc=63.10	Sec struct Sc=9.56
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGTGGGTTCGACTCCCTCCGCCGCTACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

Contig392.trna51 (911474-911547)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (911508-911510)	Score: 85.96
HMM Sc=61.47	Sec struct Sc=24.49
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGACCCTTAGCTCAGCTGGTtAGAGCTGACGGCTCATAACCGTCCGGtCGCAGGTTCGAGTCCTGCAGGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna52 (2361560-2361635)	Length: 76 bp
Type: Arg	Anticodon: CCG at 34-36 (2361593-2361595)	Score: 73.57
HMM Sc=50.24	Sec struct Sc=23.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCACCCGTAGCTCAGGGGAtAGAGCACTGGTTTCCGGTACCAGGTGtCGGGAGTTCAAATCTCTCCGGGTGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna53 (2790234-2790160)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (2790202-2790200)	Score: 92.45
HMM Sc=66.02	Sec struct Sc=26.43
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCAATAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCAAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna54 (2790151-2790060)	Length: 92 bp
Type: Ser	Anticodon: GCT at 36-38 (2790116-2790114)	Score: 71.85
HMM Sc=41.86	Sec struct Sc=29.99
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GGAGATGTACCCAAGTGGCtatAAGGGGCGCCCCTGCTAAGGGTGTAGGCCGGGAAACTGGTGCGAGGGTTCGAATCCCTCCATCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig392.trna55 (2790011-2789937)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (2789978-2789976)	Score: 79.45
HMM Sc=52.63	Sec struct Sc=26.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAtCACGGGTTCGATTCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig392.trna56 (2789932-2789857)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2789899-2789897)	Score: 95.52
HMM Sc=75.81	Sec struct Sc=19.71
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna57 (2789822-2789747)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (2789789-2789787)	Score: 81.58
HMM Sc=60.91	Sec struct Sc=20.67
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTCCTGTGGTGTAGCGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAATCCCGTCAGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna58 (2789742-2789671)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (2789710-2789708)	Score: 65.42
HMM Sc=40.18	Sec struct Sc=25.24
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: TGGGCTGTGGCCAAGTGGTAAGGCACTGGATTTTGATTCCAGCATgCGAAGGTTCGATCCCTTCCAGCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna59 (2789664-2789589)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (2789631-2789629)	Score: 99.07
HMM Sc=73.79	Sec struct Sc=25.28
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGTCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGCAGGTTCGAATCCTGCATGACACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna60 (2789559-2789474)	Length: 86 bp
Type: Leu	Anticodon: GAG at 34-36 (2789526-2789524)	Score: 66.69
HMM Sc=34.52	Sec struct Sc=32.17
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGTCGTGGCGGAATGGTaGACGCGCTAGGTTGAGGGCCTAGTGGTGGCAACACTgTGGAGGTTCAAGTCCTCTCGACCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

Contig392.trna61 (2789469-2789393)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (2789435-2789433)	Score: 86.53
HMM Sc=63.67	Sec struct Sc=22.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCACCCTTAGCTCAGCTGGAtAGAGTACTTGACTACGAATCAAGGGGtCGGGAGTTCGAATCTCTCAGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna62 (2789373-2789297)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2789339-2789337)	Score: 101.60
HMM Sc=80.33	Sec struct Sc=21.27
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna63 (2784189-2784113)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2784155-2784153)	Score: 85.61
HMM Sc=59.65	Sec struct Sc=25.96
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTTGGGCTCATAACCCAAAGGtCGTCGGTTCAAATCCGGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig392.trna64 (2784079-2784003)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2784045-2784043)	Score: 85.61
HMM Sc=59.65	Sec struct Sc=25.96
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTTGGGCTCATAACCCAAAGGtCGTCGGTTCAAATCCGGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig392.trna65 (2771479-2771407)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (2771446-2771444)	Score: 73.69
HMM Sc=56.66	Sec struct Sc=17.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGGCTTAGCTCAGCTGGGAGAGCGTTTGGCTGGCAGCCAAAAGGtCGTCGGTTCGAGCCCGATAGTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig392.trna66 (2112119-2112043)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (2112085-2112083)	Score: 81.97
HMM Sc=59.73	Sec struct Sc=22.24
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GTCTCAATAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTCGGtCGGGGGTTCGAATCCCTCTTGGGACACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig392.trna67 (1693801-1693728)	Length: 74 bp
Type: Thr	Anticodon: GGT at 33-35 (1693769-1693767)	Score: 54.54
HMM Sc=21.53	Sec struct Sc=33.01
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCTTCCGTAGGTTAATGGCAGACCTCAGCAATGGTAATGCTGCAGTGCGAGTTCGATTCTCGCCGGAAGCATCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig392.trna68 (1668592-1668509)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (1668558-1668556)	Score: 65.51
HMM Sc=38.34	Sec struct Sc=27.17
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GTCGTCGTGGCGGAACTGGTaGACGCGCTAGACTCAGAATCTAGTGGTGGCAACACCGTGGAGGTTCAAGTCCTCTCGGCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

Contig392.trna69 (610058-609985)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (610026-610024)	Score: 74.02
HMM Sc=50.85	Sec struct Sc=23.17
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGAGAGTTCGATTCTCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

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