Intracellular trafficking and secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biopolymer transport protein	U	Contig392	Exig2880	COG0811	43	2e-05
Competence protein ComGC	U	Contig392	Exig0882	COG4537	67	3e-13
Competence protein ComGC	U	Contig392	Exig0883	COG4537	36	0.001
Flagellar biosynthesis/type III secretory pathway chaperone	U	Contig392	Exig2462	COG3418	33	0.008

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis pathway component FlhA	U	Contig392	Exig1860	COG1298	824	0.0
Flagellar biosynthesis pathway component FlhB	U	Contig392	Exig1861	COG1377	372	1.0e-104
Flagellar biosynthesis pathway component FlhB	U	Contig392	Exig1892	COG1377	71	1e-14
Flagellar biosynthesis pathway component FlhB	U	Contig392	Exig2431	COG1377	55	1e-09
Flagellar biosynthesis pathway component FliP	U	Contig392	Exig1864	COG1338	254	3e-69
Flagellar biosynthesis pathway component FliQ	U	Contig392	Exig1863	COG1987	84	2e-18
Flagellar biosynthesis pathway component FliR	U	Contig392	Exig1862	COG1684	124	9e-30
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig392	Exig1876	COG1157	599	1.0e-172
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig392	Exig2676	COG1157	237	1e-63
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig392	Exig2678	COG1157	212	6e-56
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig392	Exig2725	COG1157	107	2e-24
Flagellar biosynthesis/type III secretory pathway lipoprotein	U	Contig392	Exig1879	COG1766	299	3e-82
Flagellar biosynthesis/type III secretory pathway protein	U	Contig392	Exig1877	COG1317	59	3e-10
Flagellar hook-basal body protein	U	Contig392	Exig1880	COG1677	67	2e-13
Flagellar motor switch/type III secretory pathway protein	U	Contig392	Exig1867	COG1886	96	3e-21
Flagellar motor switch/type III secretory pathway protein	U	Contig392	Exig1868	COG1886	42	6e-05
Flagellin-specific chaperone FliS	U	Contig392	Exig2432	COG1516	49	9e-08
Flagellin-specific chaperone FliS	U	Contig392	Exig2439	COG1516	111	2e-26
Muramidase (flagellum-specific)	U	Contig392	Exig0946	COG1705	53	3e-08
Predicted ATPase involved in biogenesis of flagella	U	Contig392	Exig0069	COG2874	50	4e-07
Predicted ATPase involved in biogenesis of flagella	U	Contig392	Exig0807	COG2874	36	0.004

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig392	Exig1858	COG4963	55	6e-09
Flp pilus assembly protein ATPase CpaE	U	Contig392	Exig2111	COG4963	86	3e-18
Flp pilus assembly protein ATPase CpaE	U	Contig392	Exig2637	COG4963	36	0.003
Flp pilus assembly protein ATPase CpaF	U	Contig392	Exig0880	COG4962	68	1e-12
Flp pilus assembly protein ATPase CpaF	U	Contig392	Exig2123	COG4962	71	8e-14
Flp pilus assembly protein ATPase CpaF	U	Contig392	Exig2124	COG4962	72	1e-13
Flp pilus assembly protein protease CpaA	U	Contig392	Exig2120	COG4960	58	5e-10
Flp pilus assembly protein TadD contains TPR repeats	U	Contig392	Exig1792	COG5010	39	6e-04
Flp pilus assembly protein TadD contains TPR repeats	U	Contig392	Exig2077	COG5010	43	2e-05
Flp pilus assembly protein TadD contains TPR repeats	U	Contig392	Exig2407	COG5010	39	7e-04
Lipoprotein signal peptidase	U	Contig392	Exig1950	COG0597	130	5e-32
Membrane protein implicated in regulation of membrane protease activity	U	Contig392	Exig0235	COG1585	34	0.007
Negative regulator of flagellin synthesis (anti-sigma28 factor)	U	Contig392	Exig2463	COG2747	40	5e-05
Outer membrane protein	U	Contig392	Exig0801	COG1538	38	0.001
Periplasmic serine protease (ClpP class)	U	Contig392	Exig2401	COG0616	46	2e-06
Predicted ABC-type exoprotein transport system permease component	U	Contig392	Exig0696	COG4473	133	3e-32
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig392	Exig1889	COG0758	204	7e-54
Preprotein translocase subunit Sec63	U	Contig392	Exig0471	COG5407	50	2e-07
Preprotein translocase subunit Sec63	U	Contig392	Exig0782	COG5407	65	8e-12

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig392	Exig1912	COG0653	36	0.007
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig392	Exig2426	COG0653	1044	0.0
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig392	Exig2479	COG0653	763	0.0
Preprotein translocase subunit SecD	U	Contig392	Exig0521	COG0342	52	2e-07
Preprotein translocase subunit SecD	U	Contig392	Exig2092	COG0342	82	5e-17
Preprotein translocase subunit SecD	U	Contig392	Exig2093	COG0342	296	2e-81
Preprotein translocase subunit SecD	U	Contig392	Exig2849	COG0342	43	9e-05
Preprotein translocase subunit SecD	U	Contig392	Exig2896	COG0342	51	5e-07
Preprotein translocase subunit SecE	U	Contig392	Exig0081	COG0690	51	2e-08
Preprotein translocase subunit SecF	U	Contig392	Exig0521	COG0341	64	4e-11
Preprotein translocase subunit SecF	U	Contig392	Exig2092	COG0341	253	8e-69
Preprotein translocase subunit SecF	U	Contig392	Exig2093	COG0341	68	2e-12
Preprotein translocase subunit SecF	U	Contig392	Exig2896	COG0341	54	4e-08
Preprotein translocase subunit SecG	U	Contig392	Exig2382	COG1314	37	3e-04
Preprotein translocase subunit SecY	U	Contig392	Exig0116	COG0201	395	1.0e-111
Preprotein translocase subunit YajC	U	Contig392	Exig2094	COG1862	86	5e-19
Preprotein translocase subunit YidC	U	Contig392	Exig3048	COG0706	194	8e-51

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	Contig392	Exig2401	COG0740	289	9e-80
Sec-independent protein secretion pathway components	U	Contig392	Exig2786	COG1826	54	2e-09
Sec-independent protein secretion pathway component TatC	U	Contig392	Exig2785	COG0805	201	3e-53
Signal peptidase I	U	Contig392	Exig1896	COG0681	81	4e-17
Signal recognition particle GTPase	U	Contig392	Exig1859	COG0552	100	3e-22
Signal recognition particle GTPase	U	Contig392	Exig1859	COG0541	96	3e-21
Signal recognition particle GTPase	U	Contig392	Exig1901	COG0552	230	2e-61
Signal recognition particle GTPase	U	Contig392	Exig1901	COG0541	612	1.0e-176
Signal recognition particle GTPase	U	Contig392	Exig1903	COG0552	385	1.0e-108
Signal recognition particle GTPase	U	Contig392	Exig1903	COG0541	249	3e-67
Signal recognition particle GTPase	U	Contig392	Exig2637	COG0552	34	0.010
Signal recognition particle GTPase	U	Contig392	Exig2637	COG0541	41	9e-05
Tfp pilus assembly protein ATPase PilM	U	Contig392	Exig1959	COG4972	67	3e-12
Tfp pilus assembly protein ATPase PilM	U	Contig392	Exig2115	COG4972	41	9e-05
Tfp pilus assembly protein ATPase PilM	U	Contig392	Exig2119	COG4972	63	4e-11
Tfp pilus assembly protein ATPase PilU	U	Contig392	Exig0880	COG5008	64	1e-11
Tfp pilus assembly protein ATPase PilU	U	Contig392	Exig2123	COG5008	311	5e-86
Tfp pilus assembly protein ATPase PilU	U	Contig392	Exig2124	COG5008	110	3e-25
Tfp pilus assembly protein FimT	U	Contig392	Exig0882	COG4970	36	7e-04
Tfp pilus assembly protein FimT	U	Contig392	Exig0883	COG4970	33	0.008
Tfp pilus assembly protein FimT	U	Contig392	Exig2121	COG4970	46	2e-06
Tfp pilus assembly protein FimT	U	Contig392	Exig2128	COG4970	35	0.006
Tfp pilus assembly protein FimV	U	Contig392	Exig0538	COG3170	37	0.004
Tfp pilus assembly protein major pilin PilA	U	Contig392	Exig2121	COG4969	46	2e-06
Tfp pilus assembly protein PilE	U	Contig392	Exig0882	COG4968	35	0.001
Tfp pilus assembly protein PilE	U	Contig392	Exig2121	COG4968	50	1e-07
Tfp pilus assembly protein PilF	U	Contig392	Exig1792	COG3063	40	3e-04
Tfp pilus assembly protein PilF	U	Contig392	Exig2077	COG3063	42	3e-05
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig392	Exig0880	COG2805	94	1e-20
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig392	Exig1859	COG2805	37	0.002
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig392	Exig2123	COG2805	455	1.0e-129
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig392	Exig2124	COG2805	174	2e-44
Tfp pilus assembly protein PilV	U	Contig392	Exig2127	COG4967	41	5e-05
Tfp pilus assembly protein PilW	U	Contig392	Exig2128	COG4966	37	0.001
Type III secretory pathway component EscR	U	Contig392	Exig1864	COG4790	154	5e-39
Type III secretory pathway component EscS	U	Contig392	Exig1863	COG4794	61	1e-11
Type III secretory pathway component EscT	U	Contig392	Exig1862	COG4791	102	2e-23
Type III secretory pathway component EscU	U	Contig392	Exig1861	COG4792	238	4e-64
Type III secretory pathway component EscU	U	Contig392	Exig1892	COG4792	36	4e-04
Type III secretory pathway component EscU	U	Contig392	Exig2431	COG4792	48	2e-07
Type III secretory pathway component EscV	U	Contig392	Exig1860	COG4789	539	1.0e-154
Type III secretory pathway lipoprotein EscJ	U	Contig392	Exig1879	COG4669	54	2e-08
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig392	Exig0880	COG2804	191	5e-50
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig392	Exig2123	COG2804	184	6e-48
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig392	Exig2124	COG2804	509	1.0e-145
Type II secretory pathway component PulF	U	Contig392	Exig0881	COG1459	111	9e-26
Type II secretory pathway component PulF	U	Contig392	Exig2122	COG1459	321	4e-89
Type II secretory pathway component PulJ	U	Contig392	Exig0882	COG4795	32	0.009
Type II secretory pathway component PulJ	U	Contig392	Exig0884	COG4795	37	3e-04
Type II secretory pathway component PulJ	U	Contig392	Exig2127	COG4795	42	3e-05
Type II secretory pathway component PulJ	U	Contig392	Exig2128	COG4795	35	0.004
Type II secretory pathway component PulJ	U	Contig392	Exig2129	COG4795	38	0.002
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig392	Exig0271	COG1989	36	0.009
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig392	Exig2120	COG1989	99	3e-22
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig0882	COG2165	49	6e-08
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig0883	COG2165	39	2e-04
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig0884	COG2165	33	0.004
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig2121	COG2165	49	1e-07
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig2127	COG2165	44	7e-06
Type II secretory pathway pseudopilin PulG	U	Contig392	Exig2129	COG2165	35	0.009
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig392	Exig0335	COG0630	36	0.007
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig392	Exig0649	COG0630	37	0.006
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig392	Exig0880	COG0630	83	2e-17
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig392	Exig2123	COG0630	70	3e-13
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig392	Exig2124	COG0630	76	8e-15

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