Intracellular trafficking and secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Competence protein ComGC	U	Contig652	2068	COG4537	87	3e-19
Competence protein ComGF	U	Contig652	2065	COG4940	51	3e-08

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig579	499	COG1157	235	4e-63
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig579	501	COG1157	210	3e-55
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig650	1927	COG1157	214	9e-57
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig650	1928	COG1157	156	3e-39
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig658	2706	COG1157	36	0.006
Flagellar biosynthesis/type III secretory pathway protein	U	Contig579	503	COG1317	35	0.003
Muramidase (flagellum-specific)	U	Contig533	142	COG1705	168	4e-43
Muramidase (flagellum-specific)	U	Contig643	1648	COG1705	178	6e-46
Muramidase (flagellum-specific)	U	Contig649	1892	COG1705	63	2e-11
Muramidase (flagellum-specific)	U	Contig652	2102	COG1705	167	3e-42
Muramidase (flagellum-specific)	U	Contig657	2508	COG1705	165	1e-41
Predicted ATPase involved in biogenesis of flagella	U	Contig643	1636	COG2874	56	4e-09

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig618	1044	COG4963	50	1e-07
Flp pilus assembly protein ATPase CpaE	U	Contig623	1126	COG4963	49	3e-07
Flp pilus assembly protein ATPase CpaE	U	Contig658	2608	COG4963	49	3e-07
Flp pilus assembly protein ATPase CpaF	U	Contig652	2070	COG4962	65	9e-12
Outer membrane protein	U	Contig475	14	COG1538	35	0.007
Outer membrane protein	U	Contig652	2095	COG1538	39	0.001
Periplasmic serine protease (ClpP class)	U	Contig589	611	COG0616	49	3e-07
Periplasmic serine protease (ClpP class)	U	Contig636	1424	COG0616	91	4e-20
Periplasmic serine protease (ClpP class)	U	Contig653	2177	COG0616	49	4e-07
Predicted ABC-type exoprotein transport system permease component	U	Contig652	2074	COG4473	203	1e-53
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig596	718	COG0758	254	4e-69
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig640	1543	COG0758	36	0.004
Preprotein translocase subunit Sec63	U	Contig559	302	COG5407	78	1e-15

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig520	104	COG0653	1072	0.0
Preprotein translocase subunit SecG	U	Contig579	509	COG1314	55	1e-09
Preprotein translocase subunit SecY	U	Contig595	689	COG0201	394	1.0e-111
Preprotein translocase subunit YidC	U	Contig590	617	COG0706	161	7e-41

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	Contig589	611	COG0740	299	7e-83
Protease subunit of ATP-dependent Clp protease	U	Contig636	1424	COG0740	38	5e-04
Protease subunit of ATP-dependent Clp protease	U	Contig653	2177	COG0740	118	3e-28
Signal peptidase I	U	Contig532	133	COG0681	34	0.003
Signal peptidase I	U	Contig596	713	COG0681	56	1e-09
Signal recognition particle GTPase	U	Contig532	136	COG0552	35	0.004
Signal recognition particle GTPase	U	Contig573	435	COG0552	227	1e-60
Signal recognition particle GTPase	U	Contig573	435	COG0541	603	1.0e-174
Signal recognition particle GTPase	U	Contig618	1044	COG0541	39	3e-04
Signal recognition particle GTPase	U	Contig631	1287	COG0552	375	1.0e-105
Signal recognition particle GTPase	U	Contig631	1287	COG0541	234	7e-63
Signal recognition particle GTPase	U	Contig643	1636	COG0541	35	0.009
Tfp pilus assembly protein ATPase PilM	U	Contig653	2219	COG4972	67	3e-12
Tfp pilus assembly protein ATPase PilU	U	Contig524	112	COG5008	35	0.006
Tfp pilus assembly protein ATPase PilU	U	Contig652	2070	COG5008	82	5e-17
Tfp pilus assembly protein FimT	U	Contig652	2068	COG4970	44	3e-06
Tfp pilus assembly protein FimV	U	Contig651	2034	COG3170	40	1e-04
Tfp pilus assembly protein major pilin PilA	U	Contig652	2068	COG4969	35	0.002
Tfp pilus assembly protein PilE	U	Contig652	2068	COG4968	47	4e-07
Tfp pilus assembly protein PilF	U	Contig506	63	COG3063	39	7e-04
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig652	2070	COG2805	111	8e-26
Tfp pilus assembly protein PilV	U	Contig652	2068	COG4967	37	4e-04
Tfp pilus assembly protein PilW	U	Contig652	2068	COG4966	35	0.001
Type III secretory pathway lipoprotein EscJ	U	Contig637	1455	COG4669	38	7e-04
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig584	555	COG2804	33	0.010
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig652	2070	COG2804	243	1e-65
Type II secretory pathway component ExeA (predicted ATPase)	U	Contig654	2264	COG3267	42	2e-04
Type II secretory pathway component PulF	U	Contig652	2069	COG1459	150	1e-37
Type II secretory pathway component PulJ	U	Contig652	2068	COG4795	33	0.004
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig641	1575	COG1989	54	9e-09
Type II secretory pathway pseudopilin PulG	U	Contig652	2068	COG2165	49	5e-08
Type IV secretory pathway protease TraF	U	Contig596	713	COG4959	47	5e-07
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig575	456	COG0630	37	0.004
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig589	609	COG0630	43	5e-05
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig652	2070	COG0630	75	5e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig652	2096	COG0630	38	8e-04
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig657	2504	COG0630	37	0.004
Type IV secretory pathway VirB4 protein	U	Contig589	609	COG3451	36	0.008
Type IV secretory pathway VirB4 protein	U	Contig645	1723	COG3451	42	1e-04
Type IV secretory pathway VirB4 protein	U	Contig646	1740	COG3451	36	0.007
Type IV secretory pathway VirB4 protein	U	Contig649	1893	COG3451	60	8e-10
Type IV secretory pathway VirB4 protein	U	Contig656	2442	COG3451	41	4e-04
Type IV secretory pathway VirD4 protein	U	Contig649	1896	COG3505	87	5e-18

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