DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig539	180	COG0122	67	1e-12
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig574	446	COG0122	47	3e-06
3-methyladenine DNA glycosylase	L	Contig573	434	COG2818	246	7e-67
3-methyladenine DNA glycosylase	L	Contig612	939	COG2094	197	5e-52
5'-3' exonuclease (including N-terminal domain of PolI)	L	Contig621	1086	COG0258	256	6e-69
Adenine-specific DNA methylase containing a Zn-ribbon	L	Contig601	778	COG1743	40	9e-05
Adenine-specific DNA methylase	L	Contig652	2064	COG0827	138	5e-34
A/G-specific DNA glycosylase	L	Contig539	180	COG1194	120	8e-29
A/G-specific DNA glycosylase	L	Contig574	446	COG1194	364	1.0e-102
ATPase involved in DNA repair	L	Contig513	76	COG0419	41	1e-04
ATPase involved in DNA repair	L	Contig524	112	COG0419	38	8e-04
ATPase involved in DNA repair	L	Contig538	170	COG0419	38	0.001
ATPase involved in DNA repair	L	Contig538	171	COG0419	36	0.003
ATPase involved in DNA repair	L	Contig559	305	COG0419	47	9e-07
ATPase involved in DNA repair	L	Contig559	308	COG0419	49	2e-06
ATPase involved in DNA repair	L	Contig571	421	COG0419	34	0.009
ATPase involved in DNA repair	L	Contig572	431	COG0419	41	1e-04
ATPase involved in DNA repair	L	Contig585	570	COG0419	37	0.004
ATPase involved in DNA repair	L	Contig587	587	COG0419	34	0.008
ATPase involved in DNA repair	L	Contig592	652	COG0419	46	2e-06
ATPase involved in DNA repair	L	Contig595	697	COG0419	47	2e-06
ATPase involved in DNA repair	L	Contig595	698	COG0419	44	2e-05
ATPase involved in DNA repair	L	Contig600	765	COG0419	41	1e-04
ATPase involved in DNA repair	L	Contig602	793	COG0419	38	0.002
ATPase involved in DNA repair	L	Contig616	1005	COG0497	37	0.005
ATPase involved in DNA repair	L	Contig616	1005	COG0419	169	8e-43
ATPase involved in DNA repair	L	Contig617	1016	COG0419	51	6e-08
ATPase involved in DNA repair	L	Contig622	1120	COG0419	37	0.003
ATPase involved in DNA repair	L	Contig627	1204	COG0419	50	1e-07
ATPase involved in DNA repair	L	Contig628	1222	COG0419	35	0.007
ATPase involved in DNA repair	L	Contig631	1279	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig631	1285	COG0497	48	4e-06
ATPase involved in DNA repair	L	Contig631	1285	COG0419	71	4e-13
ATPase involved in DNA repair	L	Contig632	1310	COG0497	37	0.002
ATPase involved in DNA repair	L	Contig634	1358	COG0419	37	0.003
ATPase involved in DNA repair	L	Contig638	1474	COG0419	44	4e-05
ATPase involved in DNA repair	L	Contig642	1582	COG0419	47	1e-06
ATPase involved in DNA repair	L	Contig642	1606	COG0497	43	8e-05
ATPase involved in DNA repair	L	Contig642	1606	COG0419	57	3e-09
ATPase involved in DNA repair	L	Contig643	1665	COG0419	35	0.008
ATPase involved in DNA repair	L	Contig649	1897	COG0419	43	6e-05
ATPase involved in DNA repair	L	Contig650	1933	COG0419	37	0.005
ATPase involved in DNA repair	L	Contig650	1947	COG0419	36	0.002
ATPase involved in DNA repair	L	Contig651	2039	COG0419	50	1e-07
ATPase involved in DNA repair	L	Contig652	2062	COG0419	41	3e-04
ATPase involved in DNA repair	L	Contig652	2080	COG0497	38	0.002
ATPase involved in DNA repair	L	Contig652	2080	COG0419	66	9e-12
ATPase involved in DNA repair	L	Contig652	2095	COG0419	42	2e-04
ATPase involved in DNA repair	L	Contig652	2096	COG0419	49	4e-07
ATPase involved in DNA repair	L	Contig652	2116	COG0497	36	0.008
ATPase involved in DNA repair	L	Contig652	2116	COG0419	49	1e-06
ATPase involved in DNA repair	L	Contig653	2168	COG0497	38	0.004
ATPase involved in DNA repair	L	Contig653	2168	COG0419	60	1e-09
ATPase involved in DNA repair	L	Contig653	2230	COG0497	535	1.0e-153
ATPase involved in DNA repair	L	Contig653	2230	COG0419	37	0.005
ATPase involved in DNA repair	L	Contig654	2277	COG0419	39	3e-04
ATPase involved in DNA repair	L	Contig657	2574	COG0419	39	3e-04
ATPase involved in DNA repair	L	Contig658	2698	COG0419	42	4e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig537	165	COG2256	77	2e-15
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig561	320	COG2256	43	9e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig569	401	COG2256	95	1e-20
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig582	537	COG2256	45	3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig596	723	COG2256	40	4e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig597	732	COG2256	52	1e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig603	814	COG2256	44	2e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig612	938	COG2256	570	1.0e-164
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig621	1100	COG2256	49	2e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig628	1215	COG2256	36	0.003
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig637	1428	COG2256	55	2e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig642	1620	COG2256	57	5e-09
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig647	1794	COG2256	42	2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig647	1798	COG2256	36	0.005
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig653	2206	COG2256	44	7e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig655	2411	COG2256	44	4e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig656	2466	COG2256	45	3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig658	2642	COG2256	54	6e-09
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig555	273	COG0507	502	1.0e-143
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig603	806	COG0507	36	0.009
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig603	806	COG1074	193	3e-50
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig617	1021	COG1074	507	1.0e-144
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig637	1457	COG1074	37	0.006
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig644	1675	COG1074	39	0.002
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig652	2085	COG1074	144	3e-35
ATP-dependent nuclease subunit B	L	Contig603	806	COG3857	52	1e-07
ATP-dependent nuclease subunit B	L	Contig617	1022	COG3857	584	1.0e-168
ATP-dependent nuclease subunit B	L	Contig652	2085	COG3857	42	1e-04

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	Contig569	401	COG0470	49	5e-07
ATPase involved in DNA replication	L	Contig628	1215	COG0470	54	2e-08
ATPase involved in DNA replication initiation	L	Contig537	165	COG0593	41	1e-04
ATPase involved in DNA replication initiation	L	Contig612	938	COG0593	41	2e-04
ATPase involved in DNA replication initiation	L	Contig621	1092	COG0593	35	0.006
ATPase involved in DNA replication initiation	L	Contig622	1106	COG0593	446	1.0e-126
ATPase involved in DNA replication initiation	L	Contig630	1270	COG0593	45	4e-06
ATPase involved in DNA replication initiation	L	Contig642	1620	COG0593	38	0.002
ATPase involved in DNA replication initiation	L	Contig655	2411	COG0593	41	5e-04
ATPase involved in DNA replication initiation	L	Contig656	2474	COG0593	44	1e-05
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig621	1086	COG0749	655	0.0
DNA primase	L	Contig549	232	COG0358	386	1.0e-108
DNA replication protein	L	Contig537	165	COG1484	40	3e-04
DNA replication protein	L	Contig561	320	COG1484	39	0.001
DNA replication protein	L	Contig618	1033	COG1484	37	0.003
DNA replication protein	L	Contig621	1092	COG1484	126	2e-30
DNA replication protein	L	Contig621	1100	COG1484	39	0.002
DNA replication protein	L	Contig622	1106	COG1484	64	2e-11
DNA replication protein	L	Contig630	1270	COG1484	156	2e-39
DNA replication protein	L	Contig656	2474	COG1484	172	2e-44
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig601	781	COG0272	37	0.001
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig603	805	COG0272	898	0.0
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig650	1939	COG0272	37	0.005
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig484	24	COG1198	62	7e-11
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig544	209	COG1198	65	2e-11
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig559	307	COG1198	51	3e-07
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig569	400	COG1198	42	8e-05
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig642	1576	COG1198	36	0.004
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig642	1595	COG1198	804	0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig642	1613	COG1198	85	3e-17
Replicative DNA helicase	L	Contig622	1117	COG0305	504	1.0e-144
Replicative DNA helicase	L	Contig643	1636	COG0305	51	2e-07
Ribonuclease HII	L	Contig596	717	COG0164	160	4e-41
Ribonuclease HII	L	Contig650	1944	COG0164	70	2e-13
Ribonuclease HIII	L	Contig650	1944	COG1039	295	2e-81
Single-stranded DNA-binding protein	L	Contig622	1113	COG0629	125	1e-30
Single-stranded DNA-binding protein	L	Contig649	1878	COG0629	126	8e-31
Topoisomerase IA	L	Contig522	106	COG0550	92	4e-20
Topoisomerase IA	L	Contig528	117	COG0550	314	9e-87
Topoisomerase IA	L	Contig596	719	COG0550	660	0.0
Topoisomerase IA	L	Contig649	1883	COG0550	376	1.0e-105
Topoisomerase IA	L	Contig651	1982	COG0550	280	8e-77
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig479	17	COG0188	149	2e-37
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig479	18	COG0188	226	1e-60
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig479	19	COG0188	254	4e-69
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig479	20	COG0188	157	2e-40
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig509	65	COG0188	39	6e-05
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig622	1111	COG0188	1047	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig509	64	COG0187	909	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig622	1110	COG0187	1011	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	Contig612	938	COG1474	46	6e-06
Cdc6-related protein AAA superfamily ATPase	L	Contig621	1100	COG1474	38	0.002
Cdc6-related protein AAA superfamily ATPase	L	Contig630	1270	COG1474	37	0.001
Cdc6-related protein AAA superfamily ATPase	L	Contig642	1576	COG1474	36	0.005
Cdc6-related protein AAA superfamily ATPase	L	Contig642	1620	COG1474	37	0.005
Cdc6-related protein AAA superfamily ATPase	L	Contig656	2474	COG1474	35	0.004
DNA-damage-inducible protein J	L	Contig656	2433	COG3077	35	0.002
DNA-damage-inducible protein J	L	Contig658	2708	COG3077	45	1e-06
DNA mismatch repair enzyme (predicted ATPase)	L	Contig576	460	COG0323	623	1.0e-179
DNA mismatch repair enzyme (predicted ATPase)	L	Contig622	1110	COG0323	45	2e-05
DNA or RNA helicase of superfamily II	L	Contig484	24	COG1061	64	2e-11
DNA or RNA helicase of superfamily II	L	Contig544	209	COG1061	62	1e-10
DNA or RNA helicase of superfamily II	L	Contig559	307	COG1061	64	3e-11
DNA or RNA helicase of superfamily II	L	Contig578	479	COG1061	59	5e-10
DNA or RNA helicase of superfamily II	L	Contig586	575	COG1061	57	3e-09
DNA or RNA helicase of superfamily II	L	Contig598	741	COG1061	55	8e-09
DNA or RNA helicase of superfamily II	L	Contig601	771	COG1061	50	4e-07
DNA or RNA helicase of superfamily II	L	Contig616	1004	COG1061	75	3e-14
DNA or RNA helicase of superfamily II	L	Contig640	1555	COG1061	59	1e-09
DNA or RNA helicase of superfamily II	L	Contig642	1595	COG1061	61	4e-10
DNA or RNA helicase of superfamily II	L	Contig642	1613	COG1061	64	7e-11
DNA or RNA helicase of superfamily II	L	Contig653	2207	COG1061	41	2e-04

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	Contig580	519	COG0587	987	0.0
DNA polymerase III alpha subunit	L	Contig620	1070	COG0587	241	3e-64
DNA polymerase III alpha subunit	L	Contig645	1720	COG0587	39	7e-04
DNA polymerase III alpha subunit (gram-positive type)	L	Contig580	519	COG2176	80	8e-16
DNA polymerase III alpha subunit (gram-positive type)	L	Contig588	595	COG2176	158	2e-39
DNA polymerase III alpha subunit (gram-positive type)	L	Contig601	781	COG2176	40	1e-04
DNA polymerase III alpha subunit (gram-positive type)	L	Contig620	1070	COG2176	2045	0.0
DNA polymerase III alpha subunit (gram-positive type)	L	Contig647	1814	COG2176	106	1e-24
DNA polymerase III delta subunit	L	Contig569	401	COG1466	47	3e-06
DNA polymerase III delta subunit	L	Contig612	938	COG1466	36	0.005
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig588	595	COG0847	139	9e-34
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig620	1070	COG0847	134	6e-32
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig647	1814	COG0847	126	1e-30
DNA polymerase III gamma/tau subunits	L	Contig537	165	COG2812	48	9e-07
DNA polymerase III gamma/tau subunits	L	Contig569	401	COG2812	426	1.0e-120
DNA polymerase III gamma/tau subunits	L	Contig597	732	COG2812	39	0.001
DNA polymerase III gamma/tau subunits	L	Contig612	938	COG2812	91	1e-19
DNA polymerase III gamma/tau subunits	L	Contig628	1215	COG2812	132	4e-32
DNA polymerase III gamma/tau subunits	L	Contig647	1798	COG2812	36	0.005
DNA polymerase sliding clamp subunit (PCNA homolog)	L	Contig622	1107	COG0592	260	2e-70

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA repair exonuclease	L	Contig616	1006	COG0420	171	1e-43
DNA repair exonuclease	L	Contig652	2081	COG0420	126	4e-30
DNA repair exonuclease	L	Contig658	2656	COG0420	43	2e-05
DNA repair exonuclease	L	Contig658	2707	COG0420	43	2e-05
DNA repair protein	L	Contig629	1241	COG2003	247	7e-67
DNA topoisomerase VI subunit B	L	Contig573	439	COG1389	36	0.005
DNA topoisomerase VI subunit B	L	Contig576	460	COG1389	40	7e-04
DNA topoisomerase VI subunit B	L	Contig622	1110	COG1389	40	4e-04
DNA topoisomerase VI subunit B	L	Contig623	1133	COG1389	40	3e-04
DNA topoisomerase VI subunit B	L	Contig651	2005	COG1389	37	0.002
DNA uptake protein and related DNA-binding protein	L	Contig564	354	COG1555	55	2e-08
DNA uptake protein and related DNA-binding protein	L	Contig601	781	COG1555	101	5e-23
Endonuclease IV	L	Contig567	376	COG0648	292	2e-80
Endonuclease IV	L	Contig630	1264	COG0648	38	0.001
Endonuclease IV	L	Contig657	2541	COG0648	43	2e-05
ERCC4-like helicase	L	Contig544	209	COG1111	45	2e-05
ERCC4-like helicase	L	Contig559	307	COG1111	69	1e-12
ERCC4-like helicase	L	Contig578	479	COG1111	44	3e-05
ERCC4-like helicase	L	Contig586	575	COG1111	55	1e-08
ERCC4-like helicase	L	Contig598	741	COG1111	47	3e-06
ERCC4-like helicase	L	Contig601	771	COG1111	41	3e-04
ERCC4-like helicase	L	Contig616	1004	COG1111	46	1e-05
ERCC4-like helicase	L	Contig642	1613	COG1111	39	0.001
ERCC4-like helicase	L	Contig653	2207	COG1111	43	5e-05
ERCC4-type nuclease	L	Contig629	1241	COG1948	39	4e-04
Excinuclease ATPase subunit	L	Contig499	44	COG0178	37	0.001
Excinuclease ATPase subunit	L	Contig499	46	COG0178	41	4e-05
Excinuclease ATPase subunit	L	Contig524	112	COG0178	60	2e-10
Excinuclease ATPase subunit	L	Contig531	128	COG0178	36	0.002
Excinuclease ATPase subunit	L	Contig538	170	COG0178	47	1e-06
Excinuclease ATPase subunit	L	Contig538	171	COG0178	51	1e-07
Excinuclease ATPase subunit	L	Contig559	305	COG0178	60	1e-10
Excinuclease ATPase subunit	L	Contig559	308	COG0178	1562	0.0
Excinuclease ATPase subunit	L	Contig566	363	COG0178	39	6e-04
Excinuclease ATPase subunit	L	Contig571	421	COG0178	35	0.005
Excinuclease ATPase subunit	L	Contig572	431	COG0178	51	1e-07
Excinuclease ATPase subunit	L	Contig575	453	COG0178	43	3e-05
Excinuclease ATPase subunit	L	Contig575	456	COG0178	43	8e-05
Excinuclease ATPase subunit	L	Contig575	457	COG0178	46	9e-06
Excinuclease ATPase subunit	L	Contig577	467	COG0178	40	4e-04
Excinuclease ATPase subunit	L	Contig585	570	COG0178	37	0.002
Excinuclease ATPase subunit	L	Contig587	587	COG0178	39	3e-04
Excinuclease ATPase subunit	L	Contig589	608	COG0178	39	6e-04
Excinuclease ATPase subunit	L	Contig589	609	COG0178	37	0.005
Excinuclease ATPase subunit	L	Contig592	652	COG0178	42	5e-05
Excinuclease ATPase subunit	L	Contig595	697	COG0178	51	1e-07
Excinuclease ATPase subunit	L	Contig595	698	COG0178	62	4e-11
Excinuclease ATPase subunit	L	Contig600	765	COG0178	49	4e-07
Excinuclease ATPase subunit	L	Contig602	793	COG0178	59	7e-10
Excinuclease ATPase subunit	L	Contig617	1016	COG0178	53	1e-08
Excinuclease ATPase subunit	L	Contig622	1120	COG0178	43	5e-05
Excinuclease ATPase subunit	L	Contig626	1177	COG0178	46	5e-06
Excinuclease ATPase subunit	L	Contig627	1204	COG0178	49	3e-07
Excinuclease ATPase subunit	L	Contig628	1222	COG0178	39	3e-04
Excinuclease ATPase subunit	L	Contig631	1279	COG0178	47	2e-06
Excinuclease ATPase subunit	L	Contig631	1280	COG0178	39	4e-04
Excinuclease ATPase subunit	L	Contig631	1292	COG0178	50	2e-07
Excinuclease ATPase subunit	L	Contig634	1358	COG0178	51	2e-07
Excinuclease ATPase subunit	L	Contig636	1410	COG0178	35	0.008
Excinuclease ATPase subunit	L	Contig638	1468	COG0178	35	0.004
Excinuclease ATPase subunit	L	Contig638	1474	COG0178	39	0.001
Excinuclease ATPase subunit	L	Contig640	1526	COG0178	44	9e-06
Excinuclease ATPase subunit	L	Contig642	1582	COG0178	50	1e-07
Excinuclease ATPase subunit	L	Contig643	1645	COG0178	42	1e-04
Excinuclease ATPase subunit	L	Contig643	1665	COG0178	39	4e-04
Excinuclease ATPase subunit	L	Contig643	1670	COG0178	42	4e-05
Excinuclease ATPase subunit	L	Contig646	1740	COG0178	40	5e-04
Excinuclease ATPase subunit	L	Contig646	1741	COG0178	43	4e-05
Excinuclease ATPase subunit	L	Contig647	1798	COG0178	45	1e-05
Excinuclease ATPase subunit	L	Contig647	1830	COG0178	35	0.007
Excinuclease ATPase subunit	L	Contig650	1938	COG0178	44	1e-05
Excinuclease ATPase subunit	L	Contig650	1947	COG0178	40	1e-04
Excinuclease ATPase subunit	L	Contig651	2039	COG0178	52	4e-08
Excinuclease ATPase subunit	L	Contig652	2062	COG0178	43	7e-05
Excinuclease ATPase subunit	L	Contig652	2075	COG0178	37	0.001
Excinuclease ATPase subunit	L	Contig652	2096	COG0178	68	7e-13
Excinuclease ATPase subunit	L	Contig652	2105	COG0178	37	0.001
Excinuclease ATPase subunit	L	Contig652	2116	COG0178	44	4e-05
Excinuclease ATPase subunit	L	Contig654	2277	COG0178	46	3e-06
Excinuclease ATPase subunit	L	Contig657	2503	COG0178	36	0.007
Excinuclease ATPase subunit	L	Contig657	2504	COG0178	39	7e-04
Excinuclease ATPase subunit	L	Contig657	2511	COG0178	42	1e-04
Excinuclease ATPase subunit	L	Contig657	2512	COG0178	50	6e-07
Excinuclease ATPase subunit	L	Contig657	2540	COG0178	60	4e-10
Excinuclease ATPase subunit	L	Contig657	2574	COG0178	41	1e-04
Excinuclease ATPase subunit	L	Contig658	2698	COG0178	48	5e-07
Excinuclease ATPase subunit	L	Contig658	2706	COG0178	40	3e-04
Exonuclease I	L	Contig588	595	COG2925	49	2e-06
Exonuclease III	L	Contig647	1813	COG0708	286	1e-78
Exonuclease V gamma subunit	L	Contig603	806	COG1330	37	0.005
Exonuclease VII large subunit	L	Contig653	2235	COG1570	474	1.0e-135
Exonuclease VII small subunit	L	Contig653	2234	COG1722	53	4e-09
FOG: Transposase and inactivated derivatives	L	Contig630	1268	COG3385	42	5e-05
Formamidopyrimidine-DNA glycosylase	L	Contig621	1087	COG0266	338	2e-94
Helicase subunit of the DNA excision repair complex	L	Contig484	24	COG0556	48	2e-06
Helicase subunit of the DNA excision repair complex	L	Contig544	209	COG0556	46	1e-05
Helicase subunit of the DNA excision repair complex	L	Contig559	307	COG0556	1095	0.0
Helicase subunit of the DNA excision repair complex	L	Contig586	575	COG0556	48	2e-06
Helicase subunit of the DNA excision repair complex	L	Contig597	732	COG0556	37	0.005
Helicase subunit of the DNA excision repair complex	L	Contig598	741	COG0556	54	2e-08
Helicase subunit of the DNA excision repair complex	L	Contig637	1428	COG0556	43	7e-05
Helicase subunit of the DNA excision repair complex	L	Contig642	1595	COG0556	52	1e-07
Helicase subunit of the DNA excision repair complex	L	Contig642	1613	COG0556	119	9e-28
Helicase subunit of the DNA excision repair complex	L	Contig650	1939	COG0556	42	1e-04
Holliday junction resolvasome DNA-binding subunit	L	Contig537	164	COG0632	108	2e-25
Holliday junction resolvasome helicase subunit	L	Contig537	165	COG2255	520	1.0e-149
Holliday junction resolvasome helicase subunit	L	Contig569	401	COG2255	61	2e-10
Holliday junction resolvasome helicase subunit	L	Contig603	814	COG2255	45	1e-05
Holliday junction resolvasome helicase subunit	L	Contig612	938	COG2255	69	8e-13
Holliday junction resolvasome helicase subunit	L	Contig637	1428	COG2255	37	0.006
Holliday junction resolvasome helicase subunit	L	Contig642	1620	COG2255	45	2e-05
Holliday junction resolvasome helicase subunit	L	Contig653	2206	COG2255	38	0.003
HrpA-like helicase	L	Contig484	24	COG1643	50	3e-07
HrpA-like helicase	L	Contig586	575	COG1643	52	1e-07
HrpA-like helicase	L	Contig598	741	COG1643	45	9e-06
HrpA-like helicase	L	Contig642	1613	COG1643	43	1e-04
Integrase	L	Contig578	490	COG0582	49	3e-07
Integrase	L	Contig596	721	COG0582	53	3e-08
Integrase	L	Contig609	901	COG0582	40	3e-04
Integrase	L	Contig621	1105	COG0582	72	6e-14
Integrase	L	Contig640	1535	COG0582	55	1e-08
Integrase	L	Contig640	1545	COG0582	56	4e-09
Integrase	L	Contig647	1784	COG0582	51	2e-07
Integrase	L	Contig650	1976	COG0582	57	3e-09
Integrase	L	Contig653	2198	COG0582	58	1e-09
Integrase	L	Contig655	2397	COG0582	35	0.005
Integrase	L	Contig658	2682	COG0582	38	0.001
Methylated DNA-protein cysteine methyltransferase	L	Contig522	108	COG0350	151	3e-38
Mg-dependent DNase	L	Contig635	1394	COG0084	36	0.006
Mismatch repair ATPase (MutS family)	L	Contig576	461	COG1193	131	1e-31
Mismatch repair ATPase (MutS family)	L	Contig576	461	COG0249	886	0.0
Mismatch repair ATPase (MutS family)	L	Contig626	1187	COG0249	36	0.002
Mismatch repair ATPase (MutS family)	L	Contig643	1666	COG1193	65	1e-11
Mismatch repair ATPase (MutS family)	L	Contig643	1666	COG0249	168	1e-42
Mismatch repair ATPase (MutS family)	L	Contig644	1681	COG1193	339	3e-94
Mismatch repair ATPase (MutS family)	L	Contig644	1681	COG0249	172	4e-44
Mismatch repair ATPase (MutS family)	L	Contig650	1941	COG1193	655	0.0
Mismatch repair ATPase (MutS family)	L	Contig650	1941	COG0249	173	6e-44
N6-adenine-specific methylase	L	Contig601	778	COG0742	204	3e-54
N6-adenine-specific methylase	L	Contig611	921	COG0742	34	0.006
N6-adenine-specific methylase	L	Contig612	941	COG0742	44	2e-05
N6-adenine-specific methylase	L	Contig616	1008	COG0742	39	4e-04
N6-adenine-specific methylase	L	Contig619	1058	COG0742	52	6e-08
N6-adenine-specific methylase	L	Contig628	1234	COG0742	35	0.004
N6-adenine-specific methylase	L	Contig656	2455	COG0742	37	0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig600	762	COG2816	43	2e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig624	1136	COG2816	35	0.003
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig644	1702	COG2816	42	3e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig650	1919	COG2816	36	0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig651	2000	COG2816	38	5e-04
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig600	762	COG0494	52	5e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig624	1136	COG0494	43	1e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig644	1702	COG0494	42	3e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig650	1919	COG0494	43	1e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig651	2000	COG0494	56	2e-09
Nuclease subunit of the excinuclease complex	L	Contig559	307	COG0322	39	0.001
Nuclease subunit of the excinuclease complex	L	Contig637	1428	COG0322	39	8e-04
Nuclease subunit of the excinuclease complex	L	Contig637	1435	COG0322	139	3e-34
Nuclease subunit of the excinuclease complex	L	Contig650	1939	COG0322	684	0.0
Nucleosome binding factor SPN SPT16 subunit	L	Contig653	2239	COG5406	55	5e-09
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig628	1219	COG0389	337	7e-94
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig639	1520	COG0389	236	4e-63
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig651	2048	COG0389	236	2e-63
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig658	2610	COG0389	224	1e-59
Phage terminase small subunit	L	Contig650	1967	COG3747	80	7e-17
Plasmid rolling circle replication initiator protein and truncated derivatives	L	Contig656	2450	COG5655	216	8e-58
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig603	814	COG1241	41	1e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig656	2466	COG1241	42	2e-04
Predicted ATP-dependent endonuclease of the OLD family	L	Contig622	1109	COG3593	44	2e-05
Predicted ATP-dependent endonuclease of the OLD family	L	Contig631	1285	COG3593	44	6e-05
Predicted ATP-dependent endonuclease of the OLD family	L	Contig631	1292	COG3593	37	0.002
Predicted ATP-dependent endonuclease of the OLD family	L	Contig653	2230	COG3593	36	0.005
Predicted DNA alkylation repair protein	L	Contig576	465	COG4912	76	2e-15
Predicted DNA modification methylase	L	Contig574	444	COG1041	39	6e-04
Predicted DNA modification methylase	L	Contig598	734	COG1041	45	1e-05
Predicted DNA modification methylase	L	Contig601	778	COG1041	41	4e-05
Predicted DNA modification methylase	L	Contig612	941	COG1041	36	0.005
Predicted DNA modification methylase	L	Contig656	2455	COG1041	44	9e-06
Predicted EndoIII-related endonuclease	L	Contig539	180	COG0177	285	2e-78
Predicted EndoIII-related endonuclease	L	Contig574	446	COG0177	130	1e-31
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	Contig650	1978	COG0816	159	9e-41
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig522	108	COG3695	54	4e-09
Predicted N6-adenine-specific DNA methylase	L	Contig532	138	COG0116	46	4e-06
Predicted N6-adenine-specific DNA methylase	L	Contig598	734	COG0116	451	1.0e-128
Predicted N6-adenine-specific DNA methylase	L	Contig628	1234	COG0116	38	9e-04
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig596	718	COG0758	254	4e-69
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig640	1543	COG0758	36	0.004
Predicted site-specific integrase-resolvase	L	Contig593	658	COG2452	34	0.006
Predicted site-specific integrase-resolvase	L	Contig609	912	COG2452	33	0.007
Putative phage replication protein RstA	L	Contig610	919	COG2946	99	4e-22
Putative phage replication protein RstA	L	Contig645	1715	COG2946	99	4e-22
Putative phage replication protein RstA	L	Contig647	1785	COG2946	63	4e-11
Putative phage replication protein RstA	L	Contig655	2320	COG2946	55	4e-09
Putative phage replication protein RstA	L	Contig656	2437	COG2946	114	1e-26
Putative primosome component and related protein	L	Contig539	181	COG3935	109	2e-25
Rad3-related DNA helicase	L	Contig588	595	COG1199	293	4e-80
Rad3-related DNA helicase	L	Contig591	640	COG1199	226	5e-60
Rad3-related DNA helicase	L	Contig598	741	COG1199	37	0.003
Rad3-related DNA helicase	L	Contig601	771	COG1199	42	8e-05
Rad3-related DNA helicase	L	Contig642	1595	COG1199	38	0.003
RecA-family ATPase	L	Contig643	1636	COG3598	43	4e-05
RecA/RadA recombinase	L	Contig642	1576	COG0468	300	9e-83
RecA/RadA recombinase	L	Contig643	1636	COG0468	52	8e-08
RecG-like helicase	L	Contig484	24	COG1200	44	2e-05
RecG-like helicase	L	Contig544	209	COG1200	809	0.0
RecG-like helicase	L	Contig559	307	COG1200	53	1e-07
RecG-like helicase	L	Contig578	479	COG1200	43	5e-05
RecG-like helicase	L	Contig586	575	COG1200	52	1e-07
RecG-like helicase	L	Contig598	741	COG1200	64	2e-11
RecG-like helicase	L	Contig601	771	COG1200	40	5e-04
RecG-like helicase	L	Contig642	1595	COG1200	61	4e-10
RecG-like helicase	L	Contig642	1613	COG1200	363	1.0e-101
RecG-like helicase	L	Contig653	2207	COG1200	36	0.004
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig558	297	COG1107	47	4e-06
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig559	302	COG1107	43	3e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig564	354	COG1107	36	0.007
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig579	507	COG1107	43	9e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig642	1617	COG1107	41	5e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig654	2311	COG1107	45	2e-06
Recombinational DNA repair ATPase (RecF pathway)	L	Contig584	555	COG1195	34	0.005
Recombinational DNA repair ATPase (RecF pathway)	L	Contig622	1109	COG1195	396	1.0e-111
Recombinational DNA repair ATPase (RecF pathway)	L	Contig631	1285	COG1195	49	1e-06
Recombinational DNA repair ATPase (RecF pathway)	L	Contig647	1830	COG1195	36	0.005
Recombinational DNA repair ATPase (RecF pathway)	L	Contig653	2230	COG1195	48	1e-06
Recombinational DNA repair protein (RecF pathway)	L	Contig618	1038	COG1381	186	1e-48
Replication initiation/membrane attachment protein	L	Contig621	1091	COG3611	174	1e-44
Retron-type reverse transcriptase	L	Contig610	918	COG3344	122	1e-28
Retron-type reverse transcriptase	L	Contig645	1716	COG3344	91	6e-20
Retron-type reverse transcriptase	L	Contig645	1717	COG3344	36	0.002
Retron-type reverse transcriptase	L	Contig656	2438	COG3344	122	1e-28
Reverse gyrase	L	Contig522	106	COG1110	41	1e-04
Reverse gyrase	L	Contig528	117	COG1110	92	1e-19
Reverse gyrase	L	Contig544	209	COG1110	48	2e-06
Reverse gyrase	L	Contig559	307	COG1110	42	2e-04
Reverse gyrase	L	Contig596	719	COG1110	287	1e-78
Reverse gyrase	L	Contig642	1595	COG1110	38	0.002
Reverse gyrase	L	Contig642	1613	COG1110	50	1e-06
Reverse gyrase	L	Contig649	1883	COG1110	106	4e-24
Reverse gyrase	L	Contig651	1982	COG1110	91	1e-19
Reverse gyrase	L	Contig654	2277	COG1110	34	0.007
Serine/threonine protein kinase	L	Contig642	1600	COG0515	166	4e-42
Site-specific DNA methylase	L	Contig656	2435	COG0270	241	7e-65
Site-specific recombinase DNA invertase Pin homologs	L	Contig554	269	COG1961	90	9e-20
Site-specific recombinase DNA invertase Pin homologs	L	Contig593	658	COG1961	94	8e-21
Site-specific recombinase DNA invertase Pin homologs	L	Contig602	785	COG1961	66	1e-12
Site-specific recombinase DNA invertase Pin homologs	L	Contig614	966	COG1961	99	3e-22
Site-specific recombinase DNA invertase Pin homologs	L	Contig614	968	COG1961	53	1e-08
Site-specific recombinase DNA invertase Pin homologs	L	Contig639	1516	COG1961	100	8e-23
Site-specific recombinase DNA invertase Pin homologs	L	Contig645	1710	COG1961	99	3e-22
Site-specific recombinase DNA invertase Pin homologs	L	Contig655	2318	COG1961	106	6e-24
Site-specific recombinase DNA invertase Pin homologs	L	Contig655	2319	COG1961	69	9e-13
Site-specific recombinase DNA invertase Pin homologs	L	Contig658	2611	COG1961	98	4e-22
Site-specific recombinase XerC	L	Contig578	490	COG4973	245	2e-66
Site-specific recombinase XerC	L	Contig596	721	COG4973	231	5e-62
Site-specific recombinase XerC	L	Contig609	901	COG4973	69	6e-13
Site-specific recombinase XerC	L	Contig621	1105	COG4973	76	5e-15
Site-specific recombinase XerC	L	Contig640	1535	COG4973	59	5e-10
Site-specific recombinase XerC	L	Contig640	1545	COG4973	64	1e-11
Site-specific recombinase XerC	L	Contig647	1784	COG4973	66	5e-12
Site-specific recombinase XerC	L	Contig650	1976	COG4973	70	2e-13
Site-specific recombinase XerC	L	Contig653	2157	COG4973	32	0.010
Site-specific recombinase XerC	L	Contig653	2198	COG4973	68	1e-12
Site-specific recombinase XerC	L	Contig655	2397	COG4973	46	2e-06
Site-specific recombinase XerC	L	Contig657	2579	COG4973	56	3e-09
Site-specific recombinase XerC	L	Contig658	2682	COG4973	110	2e-25
Site-specific recombinase XerD	L	Contig578	490	COG4974	368	1.0e-103
Site-specific recombinase XerD	L	Contig596	721	COG4974	341	4e-95
Site-specific recombinase XerD	L	Contig599	756	COG4974	37	3e-04
Site-specific recombinase XerD	L	Contig609	901	COG4974	97	3e-21
Site-specific recombinase XerD	L	Contig621	1105	COG4974	100	3e-22
Site-specific recombinase XerD	L	Contig640	1535	COG4974	94	2e-20
Site-specific recombinase XerD	L	Contig640	1545	COG4974	71	2e-13
Site-specific recombinase XerD	L	Contig647	1784	COG4974	79	7e-16
Site-specific recombinase XerD	L	Contig650	1976	COG4974	77	2e-15
Site-specific recombinase XerD	L	Contig653	2157	COG4974	34	0.002
Site-specific recombinase XerD	L	Contig653	2198	COG4974	103	2e-23
Site-specific recombinase XerD	L	Contig655	2397	COG4974	58	5e-10
Site-specific recombinase XerD	L	Contig657	2579	COG4974	66	5e-12
Site-specific recombinase XerD	L	Contig658	2682	COG4974	106	3e-24
Superfamily I DNA and RNA helicase	L	Contig555	273	COG0210	36	0.008
Superfamily I DNA and RNA helicase	L	Contig603	806	COG0210	646	0.0
Superfamily I DNA and RNA helicase	L	Contig617	1021	COG0210	168	3e-42
Superfamily I DNA and RNA helicase	L	Contig637	1457	COG0210	64	3e-11
Superfamily I DNA and RNA helicase	L	Contig644	1675	COG0210	51	2e-07
Superfamily I DNA and RNA helicase	L	Contig652	2085	COG0210	276	3e-75
Superfamily II DNA and RNA helicase	L	Contig484	24	COG0513	47	2e-06
Superfamily II DNA and RNA helicase	L	Contig544	209	COG0513	73	9e-14
Superfamily II DNA and RNA helicase	L	Contig559	307	COG0513	70	5e-13
Superfamily II DNA and RNA helicase	L	Contig578	479	COG0513	121	8e-29
Superfamily II DNA and RNA helicase	L	Contig586	575	COG0513	429	1.0e-121
Superfamily II DNA and RNA helicase	L	Contig598	741	COG0513	341	5e-95
Superfamily II DNA and RNA helicase	L	Contig601	771	COG0513	114	2e-26
Superfamily II DNA and RNA helicase	L	Contig616	1004	COG0513	50	1e-06
Superfamily II DNA and RNA helicase	L	Contig642	1595	COG0513	41	3e-04
Superfamily II DNA and RNA helicase	L	Contig642	1613	COG0513	67	7e-12
Superfamily II DNA and RNA helicase	L	Contig653	2207	COG0513	253	3e-68
Superfamily II DNA helicase	L	Contig544	209	COG0514	62	1e-10
Superfamily II DNA helicase	L	Contig559	307	COG0514	51	3e-07
Superfamily II DNA helicase	L	Contig578	479	COG0514	410	1.0e-115
Superfamily II DNA helicase	L	Contig586	575	COG0514	106	5e-24
Superfamily II DNA helicase	L	Contig598	741	COG0514	95	7e-21
Superfamily II DNA helicase	L	Contig601	771	COG0514	645	0.0
Superfamily II DNA helicase	L	Contig642	1613	COG0514	60	9e-10
Superfamily II DNA helicase	L	Contig653	2207	COG0514	58	1e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig484	24	COG4098	368	1.0e-103
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig544	209	COG4098	71	2e-13
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig559	307	COG4098	56	8e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig642	1595	COG4098	55	3e-08
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig642	1613	COG4098	66	2e-11
Superfamily II DNA/RNA helicase SNF2 family	L	Contig586	575	COG0553	36	0.008
Superfamily II DNA/RNA helicase SNF2 family	L	Contig598	741	COG0553	40	5e-04
Superfamily II DNA/RNA helicase SNF2 family	L	Contig601	771	COG0553	36	0.006
Superfamily II DNA/RNA helicase SNF2 family	L	Contig616	1004	COG0553	290	3e-79
Superfamily II RNA helicase	L	Contig514	80	COG4581	36	0.005
Superfamily II RNA helicase	L	Contig544	209	COG4581	38	0.002
Superfamily II RNA helicase	L	Contig578	479	COG4581	36	0.004
Superfamily II RNA helicase	L	Contig601	771	COG4581	36	0.009
Transcription-repair coupling factor (superfamily II helicase)	L	Contig484	24	COG1197	43	3e-05
Transcription-repair coupling factor (superfamily II helicase)	L	Contig544	209	COG1197	352	4e-98
Transcription-repair coupling factor (superfamily II helicase)	L	Contig559	307	COG1197	136	6e-33
Transcription-repair coupling factor (superfamily II helicase)	L	Contig598	741	COG1197	47	2e-06
Transcription-repair coupling factor (superfamily II helicase)	L	Contig642	1595	COG1197	65	3e-11
Transcription-repair coupling factor (superfamily II helicase)	L	Contig642	1613	COG1197	1249	0.0
Transposase and inactivated derivatives	L	Contig485	27	COG2801	84	1e-17
Transposase and inactivated derivatives	L	Contig501	48	COG3436	65	1e-12
Transposase and inactivated derivatives	L	Contig517	91	COG3464	91	6e-20
Transposase and inactivated derivatives	L	Contig529	122	COG3464	102	3e-23
Transposase and inactivated derivatives	L	Contig529	123	COG3464	50	3e-08
Transposase and inactivated derivatives	L	Contig530	124	COG3666	54	9e-09
Transposase and inactivated derivatives	L	Contig530	125	COG2963	43	3e-06
Transposase and inactivated derivatives	L	Contig541	201	COG3436	37	3e-04
Transposase and inactivated derivatives	L	Contig546	218	COG3464	96	2e-21
Transposase and inactivated derivatives	L	Contig546	220	COG3328	62	2e-11
Transposase and inactivated derivatives	L	Contig547	228	COG3464	86	2e-18
Transposase and inactivated derivatives	L	Contig551	250	COG2801	60	6e-11
Transposase and inactivated derivatives	L	Contig552	252	COG3328	84	3e-18
Transposase and inactivated derivatives	L	Contig552	257	COG3328	117	4e-28
Transposase and inactivated derivatives	L	Contig554	268	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig557	289	COG3316	159	1e-40
Transposase and inactivated derivatives	L	Contig557	290	COG3415	33	0.006
Transposase and inactivated derivatives	L	Contig562	336	COG3464	70	2e-13
Transposase and inactivated derivatives	L	Contig562	337	COG3464	45	8e-07
Transposase and inactivated derivatives	L	Contig568	389	COG3464	87	6e-19
Transposase and inactivated derivatives	L	Contig570	402	COG3328	68	2e-13
Transposase and inactivated derivatives	L	Contig573	441	COG3464	223	3e-59
Transposase and inactivated derivatives	L	Contig581	524	COG3316	159	1e-40
Transposase and inactivated derivatives	L	Contig581	528	COG3464	87	6e-19
Transposase and inactivated derivatives	L	Contig582	529	COG3436	56	5e-10
Transposase and inactivated derivatives	L	Contig587	590	COG3316	229	9e-62
Transposase and inactivated derivatives	L	Contig587	591	COG2963	43	4e-06
Transposase and inactivated derivatives	L	Contig588	605	COG3464	67	8e-13
Transposase and inactivated derivatives	L	Contig590	618	COG3666	49	2e-07
Transposase and inactivated derivatives	L	Contig590	631	COG3464	55	1e-09
Transposase and inactivated derivatives	L	Contig590	632	COG3464	149	5e-37
Transposase and inactivated derivatives	L	Contig593	656	COG3316	241	3e-65
Transposase and inactivated derivatives	L	Contig593	659	COG2801	58	2e-10
Transposase and inactivated derivatives	L	Contig593	660	COG2801	68	4e-13
Transposase and inactivated derivatives	L	Contig593	661	COG2963	46	5e-07
Transposase and inactivated derivatives	L	Contig594	663	COG2963	43	3e-06
Transposase and inactivated derivatives	L	Contig594	664	COG2801	85	8e-18
Transposase and inactivated derivatives	L	Contig594	665	COG3677	38	0.002
Transposase and inactivated derivatives	L	Contig594	665	COG3464	196	2e-51
Transposase and inactivated derivatives	L	Contig599	758	COG2801	94	5e-21
Transposase and inactivated derivatives	L	Contig599	759	COG3464	54	9e-09
Transposase and inactivated derivatives	L	Contig600	763	COG0675	82	7e-17
Transposase and inactivated derivatives	L	Contig608	895	COG3328	109	9e-26
Transposase and inactivated derivatives	L	Contig614	970	COG3328	242	3e-65
Transposase and inactivated derivatives	L	Contig614	974	COG3547	45	5e-06
Transposase and inactivated derivatives	L	Contig618	1047	COG3464	53	1e-08
Transposase and inactivated derivatives	L	Contig619	1049	COG3328	90	4e-20
Transposase and inactivated derivatives	L	Contig619	1051	COG3666	78	1e-15
Transposase and inactivated derivatives	L	Contig619	1064	COG3328	130	8e-32
Transposase and inactivated derivatives	L	Contig625	1164	COG3464	142	2e-35
Transposase and inactivated derivatives	L	Contig625	1170	COG3328	72	2e-14
Transposase and inactivated derivatives	L	Contig627	1201	COG3666	77	2e-15
Transposase and inactivated derivatives	L	Contig629	1258	COG2963	43	3e-06
Transposase and inactivated derivatives	L	Contig629	1259	COG2801	84	9e-18
Transposase and inactivated derivatives	L	Contig630	1269	COG4584	102	9e-23
Transposase and inactivated derivatives	L	Contig630	1275	COG3328	72	2e-14
Transposase and inactivated derivatives	L	Contig632	1309	COG3328	275	4e-75
Transposase and inactivated derivatives	L	Contig632	1312	COG3328	40	4e-05
Transposase and inactivated derivatives	L	Contig632	1314	COG3328	102	1e-23
Transposase and inactivated derivatives	L	Contig632	1319	COG2801	38	2e-04
Transposase and inactivated derivatives	L	Contig632	1322	COG2963	43	3e-06
Transposase and inactivated derivatives	L	Contig632	1324	COG3328	254	5e-69
Transposase and inactivated derivatives	L	Contig632	1329	COG2963	43	5e-06
Transposase and inactivated derivatives	L	Contig632	1330	COG2801	49	2e-07
Transposase and inactivated derivatives	L	Contig637	1463	COG3677	37	0.002
Transposase and inactivated derivatives	L	Contig637	1463	COG3464	199	2e-52
Transposase and inactivated derivatives	L	Contig637	1465	COG3436	65	1e-12
Transposase and inactivated derivatives	L	Contig638	1497	COG3436	65	1e-12
Transposase and inactivated derivatives	L	Contig639	1502	COG3316	244	3e-66
Transposase and inactivated derivatives	L	Contig639	1503	COG3328	179	2e-46
Transposase and inactivated derivatives	L	Contig639	1517	COG3666	80	4e-16
Transposase and inactivated derivatives	L	Contig639	1521	COG3328	273	1e-74
Transposase and inactivated derivatives	L	Contig639	1523	COG3547	41	1e-04
Transposase and inactivated derivatives	L	Contig645	1709	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig646	1770	COG3328	72	2e-14
Transposase and inactivated derivatives	L	Contig646	1771	COG3328	35	0.001
Transposase and inactivated derivatives	L	Contig646	1772	COG3464	150	2e-37
Transposase and inactivated derivatives	L	Contig646	1777	COG3328	57	3e-10
Transposase and inactivated derivatives	L	Contig648	1837	COG2801	95	2e-21
Transposase and inactivated derivatives	L	Contig649	1881	COG1943	102	1e-23
Transposase and inactivated derivatives	L	Contig649	1882	COG0675	155	4e-39
Transposase and inactivated derivatives	L	Contig649	1908	COG3328	135	1e-33
Transposase and inactivated derivatives	L	Contig651	2051	COG2801	72	5e-14
Transposase and inactivated derivatives	L	Contig653	2160	COG2963	49	1e-07
Transposase and inactivated derivatives	L	Contig653	2160	COG3415	38	3e-04
Transposase and inactivated derivatives	L	Contig653	2161	COG2801	74	1e-14
Transposase and inactivated derivatives	L	Contig653	2162	COG2963	47	3e-07
Transposase and inactivated derivatives	L	Contig654	2259	COG3464	52	2e-08
Transposase and inactivated derivatives	L	Contig654	2261	COG3547	48	1e-06
Transposase and inactivated derivatives	L	Contig654	2301	COG2801	83	2e-17
Transposase and inactivated derivatives	L	Contig654	2302	COG2963	46	5e-07
Transposase and inactivated derivatives	L	Contig654	2309	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig655	2329	COG2801	72	3e-14
Transposase and inactivated derivatives	L	Contig655	2335	COG3677	38	0.002
Transposase and inactivated derivatives	L	Contig655	2335	COG3464	201	6e-53
Transposase and inactivated derivatives	L	Contig655	2342	COG3328	267	7e-73
Transposase and inactivated derivatives	L	Contig655	2343	COG2963	46	1e-06
Transposase and inactivated derivatives	L	Contig655	2343	COG3415	40	1e-04
Transposase and inactivated derivatives	L	Contig655	2344	COG2801	110	1e-25
Transposase and inactivated derivatives	L	Contig655	2346	COG3547	48	1e-06
Transposase and inactivated derivatives	L	Contig655	2396	COG3666	72	7e-14
Transposase and inactivated derivatives	L	Contig656	2448	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig656	2451	COG3316	242	1e-65
Transposase and inactivated derivatives	L	Contig656	2457	COG3666	100	9e-23
Transposase and inactivated derivatives	L	Contig656	2460	COG3316	246	8e-67
Transposase and inactivated derivatives	L	Contig656	2463	COG3436	59	2e-10
Transposase and inactivated derivatives	L	Contig656	2464	COG3436	45	2e-05
Transposase and inactivated derivatives	L	Contig656	2473	COG4584	103	3e-23
Transposase and inactivated derivatives	L	Contig656	2476	COG3316	243	8e-66
Transposase and inactivated derivatives	L	Contig656	2483	COG3328	111	2e-26
Transposase and inactivated derivatives	L	Contig656	2484	COG3328	128	3e-31
Transposase and inactivated derivatives	L	Contig656	2488	COG3328	267	7e-73
Transposase and inactivated derivatives	L	Contig658	2592	COG3328	82	1e-17
Transposase and inactivated derivatives	L	Contig658	2593	COG3328	41	1e-05
Transposase and inactivated derivatives	L	Contig658	2594	COG3328	70	2e-14
Transposase and inactivated derivatives	L	Contig658	2597	COG3464	227	1e-60
Transposase and inactivated derivatives	L	Contig658	2598	COG3464	147	9e-37
Transposase and inactivated derivatives	L	Contig658	2599	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig658	2605	COG3316	246	8e-67
Transposase and inactivated derivatives	L	Contig658	2616	COG3316	247	5e-67
Transposase and inactivated derivatives	L	Contig658	2624	COG3316	71	1e-14
Transposase and inactivated derivatives	L	Contig658	2625	COG3316	159	1e-40
Transposase and inactivated derivatives	L	Contig658	2630	COG3316	158	1e-40
Transposase and inactivated derivatives	L	Contig658	2631	COG3316	72	1e-14
Transposase and inactivated derivatives	L	Contig658	2633	COG3328	222	3e-59
Transposase and inactivated derivatives	L	Contig658	2637	COG3316	245	2e-66
Transposase and inactivated derivatives	L	Contig658	2638	COG2963	43	4e-06
Transposase and inactivated derivatives	L	Contig658	2641	COG3547	48	1e-06
Transposase and inactivated derivatives	L	Contig658	2645	COG3316	71	1e-14
Transposase and inactivated derivatives	L	Contig658	2646	COG3316	159	9e-41
Transposase and inactivated derivatives	L	Contig658	2680	COG3464	150	1e-37
Transposase and inactivated derivatives	L	Contig658	2681	COG3677	38	0.002
Transposase and inactivated derivatives	L	Contig658	2681	COG3464	201	8e-53
Transposase and inactivated derivatives	L	Contig658	2690	COG3328	41	1e-05
Transposase and inactivated derivatives	L	Contig658	2691	COG2801	74	9e-15
Transposase and inactivated derivatives	L	Contig658	2695	COG2801	72	4e-14
Transposase and inactivated derivatives	L	Contig658	2696	COG2963	49	6e-08
Transposase and inactivated derivatives	L	Contig658	2700	COG3328	217	9e-58
Transposase and inactivated derivatives	L	Contig658	2701	COG3666	79	7e-16
Transposase and inactivated derivatives	L	Contig658	2709	COG3464	150	1e-37
Transposase and inactivated derivatives	L	Contig658	2710	COG3328	232	3e-62
Transposase and inactivated derivatives	L	Contig658	2718	COG2801	51	3e-08
Transposase and inactivated derivatives IS30 family	L	Contig527	115	COG2826	55	3e-09
Transposase and inactivated derivatives IS30 family	L	Contig531	132	COG2826	130	5e-32
Transposase and inactivated derivatives IS30 family	L	Contig545	216	COG2826	103	3e-24
Transposase and inactivated derivatives IS30 family	L	Contig562	335	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig589	616	COG2826	130	8e-32
Transposase and inactivated derivatives IS30 family	L	Contig590	633	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig613	950	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig614	977	COG2826	174	9e-45
Transposase and inactivated derivatives IS30 family	L	Contig624	1151	COG2826	174	8e-45
Transposase and inactivated derivatives IS30 family	L	Contig630	1267	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig636	1413	COG2826	174	9e-45
Transposase and inactivated derivatives IS30 family	L	Contig638	1484	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig638	1491	COG2826	53	6e-09
Transposase and inactivated derivatives IS30 family	L	Contig638	1492	COG2826	100	3e-23
Transposase and inactivated derivatives IS30 family	L	Contig638	1495	COG2826	176	2e-45
Transposase and inactivated derivatives IS30 family	L	Contig639	1515	COG2826	247	1e-66
Transposase and inactivated derivatives IS30 family	L	Contig647	1782	COG2826	174	9e-45
Transposase and inactivated derivatives IS30 family	L	Contig654	2307	COG2826	178	4e-46
Transposase and inactivated derivatives IS30 family	L	Contig655	2316	COG2826	174	8e-45
Transposase and inactivated derivatives IS30 family	L	Contig655	2331	COG2826	177	8e-46
Transposase and inactivated derivatives IS30 family	L	Contig655	2332	COG2826	84	7e-18
Transposase and inactivated derivatives IS30 family	L	Contig655	2394	COG2826	175	5e-45
Transposase and inactivated derivatives IS30 family	L	Contig655	2414	COG2826	172	4e-44
Transposase and inactivated derivatives IS30 family	L	Contig656	2485	COG2826	174	8e-45
Transposase and inactivated derivatives IS30 family	L	Contig656	2490	COG2826	174	9e-45
Transposase and inactivated derivatives IS30 family	L	Contig658	2669	COG2826	175	4e-45
Transposase and inactivated derivatives IS30 family	L	Contig658	2678	COG2826	165	4e-42
Transposase and inactivated derivatives IS30 family	L	Contig658	2689	COG2826	175	5e-45
Transposase and inactivated derivatives IS30 family	L	Contig658	2716	COG2826	177	9e-46
Uncharacterized protein related to Endonuclease III	L	Contig539	180	COG2231	78	4e-16
Uncharacterized protein related to Endonuclease III	L	Contig574	446	COG2231	57	3e-09
Uracil-DNA glycosylase	L	Contig561	316	COG1573	89	3e-19
Uracil DNA glycosylase	L	Contig647	1818	COG0692	346	7e-97
Zn-finger domain associated with topoisomerase type I	L	Contig522	106	COG0551	36	0.002
Zn-finger domain associated with topoisomerase type I	L	Contig596	719	COG0551	117	3e-27

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