Translation, Ribosomal Structure and Biogenesis

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
16S RNA G1207 methylase RsmC	J	Contig532	134	COG2813	34	0.005
16S RNA G1207 methylase RsmC	J	Contig532	138	COG2813	58	7e-10
16S RNA G1207 methylase RsmC	J	Contig574	444	COG2813	39	8e-04
16S RNA G1207 methylase RsmC	J	Contig601	778	COG2813	38	4e-04
16S RNA G1207 methylase RsmC	J	Contig603	800	COG2813	39	9e-04
16S RNA G1207 methylase RsmC	J	Contig611	921	COG2813	212	1e-56
16S RNA G1207 methylase RsmC	J	Contig612	941	COG2813	59	6e-10
16S RNA G1207 methylase RsmC	J	Contig616	1008	COG2813	60	2e-10
16S RNA G1207 methylase RsmC	J	Contig656	2455	COG2813	59	4e-10
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig551	247	COG1187	187	8e-49
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig578	486	COG1187	264	4e-72
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig642	1615	COG1187	37	3e-04
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig652	2139	COG1187	35	0.008
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig653	2214	COG1187	36	0.003
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig657	2525	COG1187	246	9e-67
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase	J	Contig657	2537	COG1187	49	3e-07
23S rRNA methylase	J	Contig653	2226	COG0293	37	0.002
23S rRNA methylase	J	Contig653	2232	COG0293	34	0.008
23S rRNA methylase	J	Contig654	2288	COG0293	38	0.001
2-methylthioadenine synthetase	J	Contig466	5	COG0621	39	3e-04
2-methylthioadenine synthetase	J	Contig540	188	COG0621	43	4e-05
2-methylthioadenine synthetase	J	Contig657	2506	COG0621	41	2e-04
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig584	556	COG1670	36	0.001
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig591	636	COG1670	47	8e-07
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig607	861	COG1670	35	0.002
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig644	1700	COG1670	35	0.002
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig647	1808	COG1670	36	0.001
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig647	1815	COG1670	67	6e-13
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig647	1821	COG1670	36	0.002
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig656	2453	COG1670	35	0.005
Acetyltransferase including N-acetylase of ribosomal protein	J	Contig658	2684	COG1670	39	1e-04

AMINOACYL-TRNA SYNTHETASES AND ALTERNATIVE SYSTEMS FOR AMINO ACID ACTIVATION

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Alanyl-tRNA synthetase	J	Contig637	1460	COG0013	58	3e-09
Arginyl-tRNA synthetase	J	Contig607	855	COG0018	510	1.0e-145
Arginyl-tRNA synthetase	J	Contig629	1244	COG0018	37	0.005
Aspartyl/asparaginyl-tRNA synthetase	J	Contig498	40	COG0017	48	4e-07
Aspartyl/asparaginyl-tRNA synthetase	J	Contig512	74	COG0017	64	9e-12
Aspartyl/asparaginyl-tRNA synthetase	J	Contig512	75	COG0017	61	3e-11
Aspartyl/asparaginyl-tRNA synthetase	J	Contig588	598	COG0017	560	1.0e-161
Aspartyl/asparaginyl-tRNA synthetase	J	Contig612	948	COG0017	171	1e-43
Aspartyl-tRNA synthetase	J	Contig498	40	COG0173	41	5e-05
Aspartyl-tRNA synthetase	J	Contig512	74	COG0173	55	4e-09
Aspartyl-tRNA synthetase	J	Contig512	75	COG0173	69	6e-14
Aspartyl-tRNA synthetase	J	Contig588	598	COG0173	143	3e-35
Aspartyl-tRNA synthetase	J	Contig612	948	COG0173	929	0.0
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase	J	Contig584	561	COG0154	318	4e-88
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase	J	Contig603	803	COG0154	524	1.0e-150
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)	J	Contig603	802	COG0064	725	0.0
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)	J	Contig646	1773	COG0064	42	1e-05
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	J	Contig603	804	COG0721	100	3e-23
Cysteinyl-tRNA synthetase	J	Contig600	761	COG0215	59	1e-09
Cysteinyl-tRNA synthetase	J	Contig629	1244	COG0215	57	7e-09
Cysteinyl-tRNA synthetase	J	Contig643	1632	COG0215	638	0.0
Cysteinyl-tRNA synthetase	J	Contig653	2212	COG0215	58	3e-09
Cysteinyl-tRNA synthetase	J	Contig657	2509	COG0215	60	6e-10
Glutamyl- and glutaminyl-tRNA synthetase	J	Contig600	761	COG0008	40	4e-04
Glutamyl- and glutaminyl-tRNA synthetase	J	Contig643	1634	COG0008	508	1.0e-145
Glycyl-tRNA synthetase alpha subunit	J	Contig618	1039	COG0752	546	1.0e-157
Glycyl-tRNA synthetase beta subunit	J	Contig618	1040	COG0751	810	0.0
Glycyl-tRNA synthetase (class II)	J	Contig620	1069	COG0423	36	0.005
Glycyl-tRNA synthetase (class II)	J	Contig637	1460	COG0423	50	8e-07
Glycyl-tRNA synthetase (class II)	J	Contig658	2724	COG0423	33	0.003
Histidyl-tRNA synthetase	J	Contig612	947	COG0124	491	1.0e-140
Histidyl-tRNA synthetase	J	Contig620	1069	COG0124	49	7e-07
Histidyl-tRNA synthetase	J	Contig637	1460	COG0124	49	7e-07
Isoleucyl-tRNA synthetase	J	Contig600	761	COG0060	81	2e-16
Isoleucyl-tRNA synthetase	J	Contig629	1244	COG0060	474	1.0e-134
Isoleucyl-tRNA synthetase	J	Contig643	1632	COG0060	62	1e-10
Isoleucyl-tRNA synthetase	J	Contig653	2212	COG0060	1218	0.0
Isoleucyl-tRNA synthetase	J	Contig657	2509	COG0060	227	3e-60
Leucyl-tRNA synthetase	J	Contig600	761	COG0495	114	2e-26
Leucyl-tRNA synthetase	J	Contig629	1244	COG0495	229	8e-61
Leucyl-tRNA synthetase	J	Contig643	1632	COG0495	59	6e-10
Leucyl-tRNA synthetase	J	Contig653	2212	COG0495	207	2e-54
Leucyl-tRNA synthetase	J	Contig657	2509	COG0495	1066	0.0
Lysyl-tRNA synthetase (class I)	J	Contig600	761	COG1384	36	0.010
Lysyl-tRNA synthetase (class I)	J	Contig617	1017	COG1384	36	0.004
Lysyl-tRNA synthetase (class I)	J	Contig643	1632	COG1384	49	9e-07
Lysyl-tRNA synthetase (class I)	J	Contig657	2509	COG1384	40	7e-04
Lysyl-tRNA synthetase (class II)	J	Contig498	40	COG1190	176	4e-46
Lysyl-tRNA synthetase (class II)	J	Contig512	74	COG1190	259	1e-70
Lysyl-tRNA synthetase (class II)	J	Contig512	75	COG1190	214	1e-57
Lysyl-tRNA synthetase (class II)	J	Contig588	598	COG1190	126	3e-30
Lysyl-tRNA synthetase (class II)	J	Contig612	948	COG1190	115	9e-27
Phenylalanyl-tRNA synthetase alpha subunit	J	Contig512	74	COG0016	36	0.002
Phenylalanyl-tRNA synthetase alpha subunit	J	Contig617	1019	COG0016	454	1.0e-129
Phenylalanyl-tRNA synthetase alpha subunit	J	Contig617	1019	COG2024	61	1e-10
Phenylalanyl-tRNA synthetase beta subunit	J	Contig617	1018	COG0072	604	1.0e-174
Phenylalanyl-tRNA synthetase beta subunit	J	Contig644	1699	COG0072	38	7e-04
Prolyl-tRNA synthetase	J	Contig620	1069	COG0442	572	1.0e-164
Prolyl-tRNA synthetase	J	Contig623	1132	COG0442	55	8e-09
Prolyl-tRNA synthetase	J	Contig637	1460	COG0442	94	2e-20
Seryl-tRNA synthetase	J	Contig620	1069	COG0172	58	2e-09
Seryl-tRNA synthetase	J	Contig623	1132	COG0172	590	1.0e-170
Seryl-tRNA synthetase	J	Contig637	1460	COG0172	58	2e-09
Seryl-tRNA synthetase	J	Contig650	1943	COG0172	34	0.006
Threonyl-tRNA synthetase	J	Contig612	947	COG0441	46	4e-06
Threonyl-tRNA synthetase	J	Contig620	1069	COG0441	68	1e-12
Threonyl-tRNA synthetase	J	Contig623	1132	COG0441	63	3e-11
Threonyl-tRNA synthetase	J	Contig637	1460	COG0441	753	0.0
Tryptophanyl-tRNA synthetase	J	Contig617	1017	COG0180	343	1e-95
Tryptophanyl-tRNA synthetase	J	Contig643	1634	COG0180	43	7e-05
Tyrosyl-tRNA synthetase	J	Contig617	1017	COG0162	60	2e-10
Tyrosyl-tRNA synthetase	J	Contig652	2139	COG0162	439	1.0e-124
Valyl-tRNA synthetase	J	Contig600	761	COG0525	105	8e-24
Valyl-tRNA synthetase	J	Contig629	1244	COG0525	1260	0.0
Valyl-tRNA synthetase	J	Contig643	1632	COG0525	46	5e-06
Valyl-tRNA synthetase	J	Contig653	2212	COG0525	450	1.0e-127
Valyl-tRNA synthetase	J	Contig657	2509	COG0525	315	7e-87

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Aminoglycoside phosphotransferase	J	Contig557	288	COG3231	118	3e-28
Aminoglycoside phosphotransferase	J	Contig656	2452	COG3231	158	5e-40
Cytosine/adenosine deaminase	J	Contig601	783	COG0590	52	3e-08
Cytosine/adenosine deaminase	J	Contig654	2291	COG0590	181	2e-47
Cytotoxic translational repressor of toxin-antitoxin stability system	J	Contig658	2648	COG2026	77	2e-16
Dimethyladenosine transferase (rRNA methylation)	J	Contig585	569	COG0030	43	6e-05
Dimethyladenosine transferase (rRNA methylation)	J	Contig656	2458	COG0030	161	6e-41
D-Tyr-tRNAtyr deacylase	J	Contig612	944	COG1490	217	3e-58
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig586	577	COG0189	36	0.004
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig601	774	COG0189	42	3e-04
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig606	842	COG0189	44	6e-05
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig634	1364	COG0189	42	9e-05
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	J	Contig637	1444	COG0189	50	4e-07
Glu-tRNAGln amidotransferase subunit E (contains GAD domain)	J	Contig603	802	COG2511	114	2e-26
Glu-tRNAGln amidotransferase subunit E (contains GAD domain)	J	Contig646	1773	COG2511	52	2e-08
GTP-binding protein required for 40S ribosome biogenesis	J	Contig538	170	COG5192	34	0.009
GTP-binding protein required for 40S ribosome biogenesis	J	Contig651	2039	COG5192	38	7e-04
L-asparaginase/ Glu-tRNAGln amidotransferase subunit D	J	Contig629	1252	COG0252	297	6e-82
Methionyl-tRNA synthetase	J	Contig600	761	COG0143	684	0.0
Methionyl-tRNA synthetase	J	Contig629	1244	COG0143	122	1e-28
Methionyl-tRNA synthetase	J	Contig643	1632	COG0143	61	3e-10
Methionyl-tRNA synthetase	J	Contig653	2212	COG0143	88	2e-18
Methionyl-tRNA synthetase	J	Contig657	2509	COG0143	100	4e-22
Methylase of polypeptide chain release factors	J	Contig532	138	COG2890	235	4e-63
Methylase of polypeptide chain release factors	J	Contig574	444	COG2890	46	6e-06
Methylase of polypeptide chain release factors	J	Contig598	734	COG2890	43	4e-05
Methylase of polypeptide chain release factors	J	Contig601	778	COG2890	45	3e-06
Methylase of polypeptide chain release factors	J	Contig603	800	COG2890	38	0.002
Methylase of polypeptide chain release factors	J	Contig611	921	COG2890	78	5e-16
Methylase of polypeptide chain release factors	J	Contig612	941	COG2890	61	1e-10
Methylase of polypeptide chain release factors	J	Contig616	1008	COG2890	54	1e-08
Methylase of polypeptide chain release factors	J	Contig619	1058	COG2890	39	7e-04
Methylase of polypeptide chain release factors	J	Contig628	1234	COG2890	37	0.002
Methylase of polypeptide chain release factors	J	Contig637	1453	COG2890	40	1e-04
Methylase of polypeptide chain release factors	J	Contig652	2064	COG2890	48	7e-07
Methylase of polypeptide chain release factors	J	Contig656	2455	COG2890	41	9e-05
N2 N2-dimethylguanosine tRNA methyltransferase	J	Contig601	778	COG1867	41	4e-05
N2 N2-dimethylguanosine tRNA methyltransferase	J	Contig612	941	COG1867	38	8e-04
NAD(FAD)-utilizing enzyme possibly involved in translation	J	Contig596	720	COG1206	736	0.0
NAD(FAD)-utilizing enzyme possibly involved in translation	J	Contig623	1124	COG1206	64	2e-11
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig541	197	COG1208	121	7e-29
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig568	383	COG1208	36	0.003
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig589	610	COG1208	34	0.005
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig624	1138	COG1208	53	5e-08
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig642	1585	COG1208	155	4e-39
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig643	1633	COG1208	35	0.003
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig651	2057	COG1208	50	2e-07
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig653	2147	COG1208	148	6e-37
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	J	Contig654	2272	COG1208	121	4e-29
Peptide chain release factor RF-3	J	Contig543	206	COG4108	63	3e-11
Peptide chain release factor RF-3	J	Contig601	770	COG4108	104	2e-23
Peptide chain release factor RF-3	J	Contig620	1075	COG4108	64	3e-11
Peptide chain release factor RF-3	J	Contig621	1104	COG4108	118	1e-27
Peptide chain release factor RF-3	J	Contig637	1427	COG4108	770	0.0
Peptide chain release factor RF-3	J	Contig656	2446	COG4108	193	2e-50
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig558	297	COG1185	970	0.0
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig564	354	COG1185	74	5e-14
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig578	476	COG1185	39	2e-04
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig579	507	COG1185	53	8e-08
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig617	1011	COG1185	47	3e-06
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig642	1617	COG1185	84	4e-18
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	J	Contig654	2311	COG1185	68	2e-13
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig591	641	COG1236	43	1e-05
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig613	958	COG1236	41	9e-05
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig628	1230	COG1236	35	0.005
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig629	1239	COG1236	66	6e-12
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig654	2279	COG1236	82	7e-17
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig654	2281	COG1236	37	0.001
Predicted exonuclease of the beta-lactamase fold involved in RNA processing	J	Contig656	2472	COG1236	43	2e-05
Predicted GTPase probable translation factor	J	Contig514	79	COG0012	97	2e-21
Predicted GTPase probable translation factor	J	Contig589	615	COG0012	44	3e-05
Predicted GTPase probable translation factor	J	Contig623	1129	COG0012	520	1.0e-149
Predicted GTPase probable translation factor	J	Contig636	1408	COG0012	45	2e-05
Predicted GTPase subunit of the pre-mRNA cleavage complex	J	Contig658	2698	COG5623	40	2e-04
Predicted ribosomal protein	J	Contig561	318	COG2868	98	1e-22
Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)	J	Contig558	297	COG1096	37	0.004
Predicted RNA-binding protein containing KH domain possibly ribosomal protein	J	Contig637	1449	COG1534	96	4e-22
Predicted RNA methylase	J	Contig532	138	COG2263	53	3e-08
Predicted RNA methylase	J	Contig574	444	COG2263	39	6e-04
Predicted RNA methylase	J	Contig598	734	COG2263	36	0.006
Predicted RNA methylase	J	Contig601	778	COG2263	39	1e-04
Predicted RNA methylase	J	Contig603	800	COG2263	44	2e-05
Predicted RNA methylase	J	Contig611	921	COG2263	39	4e-04
Predicted RNA methylase	J	Contig612	941	COG2263	55	8e-09
Predicted RNA methylase	J	Contig637	1453	COG2263	40	2e-04
Predicted RNA methylase	J	Contig656	2455	COG2263	46	3e-06
Predicted rRNA methylase	J	Contig578	486	COG1189	40	2e-04
Predicted rRNA methylase	J	Contig653	2214	COG1189	36	0.002
Predicted rRNA methylase	J	Contig653	2232	COG1189	314	4e-87
Predicted rRNA methylase	J	Contig656	2455	COG1189	42	4e-05
Predicted rRNA methylase	J	Contig657	2525	COG1189	39	3e-04
Predicted rRNA methylase (SpoU class)	J	Contig519	97	COG0219	33	0.004
Predicted rRNA methylase (SpoU class)	J	Contig555	271	COG0219	213	4e-57
Predicted rRNA methylase (SpoU class)	J	Contig643	1630	COG0219	48	9e-07
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain	J	Contig611	923	COG0482	50	4e-07
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain	J	Contig625	1163	COG0482	49	1e-06
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain	J	Contig642	1618	COG0482	36	0.005
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain	J	Contig651	1988	COG0482	522	1.0e-149
Pseudouridine synthase	J	Contig620	1080	COG0130	221	5e-59
Pseudouridylate synthase 23S RNA-specific	J	Contig551	247	COG0564	50	1e-07
Pseudouridylate synthase 23S RNA-specific	J	Contig578	486	COG0564	77	8e-16
Pseudouridylate synthase 23S RNA-specific	J	Contig642	1615	COG0564	39	5e-05
Pseudouridylate synthase 23S RNA-specific	J	Contig653	2214	COG0564	37	0.001
Pseudouridylate synthase 23S RNA-specific	J	Contig657	2525	COG0564	89	2e-19
Pseudouridylate synthase 23S RNA-specific	J	Contig657	2537	COG0564	226	1e-60
Pseudouridylate synthase	J	Contig595	700	COG0101	299	1e-82
Pseudouridylate synthase	J	Contig655	2339	COG0101	277	4e-76
Putative translation factor (SUA5)	J	Contig532	139	COG0009	130	3e-32
Putative translation factor (SUA5)	J	Contig532	140	COG0009	118	5e-28
Queuine/archaeosine tRNA-ribosyltransferase	J	Contig534	149	COG0343	453	1.0e-129
Queuine/archaeosine tRNA-ribosyltransferase	J	Contig534	150	COG0343	106	4e-25
Ribonuclease G and E	J	Contig558	297	COG1530	42	2e-04
Ribonuclease G and E	J	Contig654	2311	COG1530	38	3e-04
Ribosomal protein L11 methylase	J	Contig532	138	COG2264	49	5e-07
Ribosomal protein L11 methylase	J	Contig574	444	COG2264	40	3e-04
Ribosomal protein L11 methylase	J	Contig601	778	COG2264	43	2e-05
Ribosomal protein L11 methylase	J	Contig611	921	COG2264	50	2e-07
Ribosomal protein L11 methylase	J	Contig612	941	COG2264	299	2e-82
Ribosomal protein L11 methylase	J	Contig619	1058	COG2264	36	0.003
Ribosomal protein L11 methylase	J	Contig628	1234	COG2264	35	0.005
Ribosomal protein L11 methylase	J	Contig653	2232	COG2264	37	0.001
Ribosomal protein L11 methylase	J	Contig656	2455	COG2264	57	1e-09

RIBOSOMAL PROTEINS - LARGE SUBUNIT

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Ribosomal protein HS6-type (S12/L30/L7a)	J	Contig620	1074	COG1358	66	4e-13
Ribosomal protein L13	J	Contig643	1672	COG0102	210	3e-56
Ribosomal protein L14	J	Contig595	679	COG0093	180	3e-47
Ribosomal protein L15	J	Contig595	688	COG0200	149	7e-38
Ribosomal protein L16/L10E	J	Contig595	676	COG0197	178	1e-46
Ribosomal protein L17	J	Contig595	696	COG0203	153	3e-39
Ribosomal protein L18	J	Contig595	685	COG0256	143	3e-36
Ribosomal protein L18E	J	Contig595	688	COG1727	39	1e-04
Ribosomal protein L19	J	Contig656	2428	COG0335	160	2e-41
Ribosomal protein L20	J	Contig563	341	COG0292	161	9e-42
Ribosomal protein L21	J	Contig561	317	COG0261	124	2e-30
Ribosomal protein L22	J	Contig595	674	COG0091	148	1e-37
Ribosomal protein L24	J	Contig595	680	COG0198	85	8e-19
Ribosomal protein L25 (general stress protein Ctc)	J	Contig551	246	COG1825	81	6e-17
Ribosomal protein L27	J	Contig561	319	COG0211	134	1e-33
Ribosomal protein L29	J	Contig595	677	COG0255	49	7e-08
Ribosomal protein L2	J	Contig595	672	COG0090	256	6e-70
Ribosomal protein L30E	J	Contig620	1074	COG1911	38	1e-04
Ribosomal protein L30/L7E	J	Contig595	687	COG1841	66	4e-13
Ribosomal protein L32	J	Contig580	514	COG0333	71	2e-14
Ribosomal protein L35	J	Contig563	340	COG0291	47	3e-07
Ribosomal protein L36	J	Contig595	692	COG0257	47	3e-07
Ribosomal protein L5	J	Contig595	681	COG0094	280	5e-77
Ribosomal protein L6P/L9E	J	Contig595	684	COG0097	221	2e-59
Ribosomal protein L9	J	Contig622	1116	COG0359	136	8e-34

RIBOSOMAL PROTEINS - SMALL SUBUNIT

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig558	297	COG1098	77	4e-15
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig564	354	COG1098	61	4e-10
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig578	476	COG1098	35	0.002
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig579	507	COG1098	58	4e-09
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig642	1617	COG1098	140	5e-35
Predicted RNA binding protein (contains ribosomal protein S1 domain)	J	Contig654	2311	COG1098	133	6e-33
Ribosomal protein S11	J	Contig595	694	COG0100	176	5e-46
Ribosomal protein S13	J	Contig595	693	COG0099	155	9e-40
Ribosomal protein S14	J	Contig511	71	COG0199	63	4e-12
Ribosomal protein S14	J	Contig595	682	COG0199	80	2e-17
Ribosomal protein S15P/S13E	J	Contig558	298	COG0184	111	1e-26
Ribosomal protein S17	J	Contig595	678	COG0186	102	4e-24
Ribosomal protein S18	J	Contig622	1114	COG0238	85	8e-19
Ribosomal protein S19	J	Contig595	673	COG0185	142	5e-36
Ribosomal protein S1	J	Contig558	297	COG0539	78	2e-15
Ribosomal protein S1	J	Contig564	354	COG0539	78	2e-15
Ribosomal protein S1	J	Contig578	476	COG0539	93	7e-21
Ribosomal protein S1	J	Contig579	507	COG0539	50	7e-07
Ribosomal protein S1	J	Contig642	1617	COG0539	80	7e-17
Ribosomal protein S1	J	Contig654	2311	COG0539	76	5e-16
Ribosomal protein S2	J	Contig531	130	COG0052	36	0.006
Ribosomal protein S3	J	Contig595	675	COG0092	277	4e-76
Ribosomal protein S4 and related protein	J	Contig578	486	COG0522	37	0.001
Ribosomal protein S4 and related protein	J	Contig652	2139	COG0522	36	0.007
Ribosomal protein S5	J	Contig595	686	COG0098	215	2e-57
Ribosomal protein S6	J	Contig622	1112	COG0360	102	3e-24
Ribosomal protein S8	J	Contig595	683	COG0096	196	3e-52
Ribosomal protein S9	J	Contig643	1671	COG0103	175	1e-45

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Ribosome-associated chaperone zuotin	J	Contig559	302	COG5269	54	2e-08
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	J	Contig642	1615	COG1188	90	2e-20
Ribosome-associated protein Y (PSrp-1)	J	Contig520	105	COG1544	111	4e-26
Ribosome-binding factor A	J	Contig620	1076	COG0858	126	3e-31
RNA-binding protein of the Puf family translational repressor	J	Contig539	179	COG5099	38	0.003
RNA-binding protein of the Puf family translational repressor	J	Contig571	418	COG5099	41	3e-04
RNA-binding protein of the Puf family translational repressor	J	Contig655	2351	COG5099	35	0.005
RNA-binding protein Rrp4 and related protein (contain S1 domain and KH domain)	J	Contig558	297	COG1097	38	0.003
RNA-binding protein Rrp4 and related protein (contain S1 domain and KH domain)	J	Contig642	1617	COG1097	39	2e-04
RNA-binding protein Rrp4 and related protein (contain S1 domain and KH domain)	J	Contig654	2311	COG1097	34	0.003
RNase PH	J	Contig558	297	COG0689	93	6e-20
RNase PH	J	Contig617	1011	COG0689	259	3e-70
RNase PH-related exoribonuclease	J	Contig558	297	COG2123	51	3e-07
RNase PH-related exoribonuclease	J	Contig617	1011	COG2123	80	2e-16
rRNA methylase	J	Contig519	96	COG0566	135	3e-33
rRNA methylase	J	Contig519	97	COG0566	51	2e-08
rRNA methylase	J	Contig555	271	COG0565	46	2e-06
rRNA methylase	J	Contig555	271	COG0566	63	8e-12
rRNA methylase	J	Contig643	1630	COG0565	36	0.003
rRNA methylase	J	Contig643	1630	COG0566	231	5e-62
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	J	Contig572	432	COG0809	514	1.0e-147
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig532	134	COG2265	46	3e-06
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig532	138	COG2265	48	8e-07
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig574	444	COG2265	460	1.0e-131
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig583	543	COG2265	42	4e-05
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig601	778	COG2265	41	6e-05
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig603	800	COG2265	445	1.0e-126
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig611	921	COG2265	50	1e-07
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig612	941	COG2265	38	0.001
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig616	1008	COG2265	40	2e-04
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig642	1598	COG2265	38	0.001
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	J	Contig656	2455	COG2265	35	0.005
Selenocysteine-specific translation elongation factor	J	Contig543	206	COG3276	187	2e-48
Selenocysteine-specific translation elongation factor	J	Contig601	770	COG3276	67	5e-12
Selenocysteine-specific translation elongation factor	J	Contig603	813	COG3276	36	0.002
Selenocysteine-specific translation elongation factor	J	Contig620	1075	COG3276	95	2e-20
Selenocysteine-specific translation elongation factor	J	Contig621	1104	COG3276	77	3e-15
Selenocysteine-specific translation elongation factor	J	Contig637	1427	COG3276	53	6e-08
Selenocysteine-specific translation elongation factor	J	Contig656	2446	COG3276	81	3e-16
Superfamily II DNA and RNA helicase	J	Contig484	24	COG0513	47	2e-06
Superfamily II DNA and RNA helicase	J	Contig544	209	COG0513	73	9e-14
Superfamily II DNA and RNA helicase	J	Contig559	307	COG0513	70	5e-13
Superfamily II DNA and RNA helicase	J	Contig578	479	COG0513	121	8e-29
Superfamily II DNA and RNA helicase	J	Contig586	575	COG0513	429	1.0e-121
Superfamily II DNA and RNA helicase	J	Contig598	741	COG0513	341	5e-95
Superfamily II DNA and RNA helicase	J	Contig601	771	COG0513	114	2e-26
Superfamily II DNA and RNA helicase	J	Contig616	1004	COG0513	50	1e-06
Superfamily II DNA and RNA helicase	J	Contig642	1595	COG0513	41	3e-04
Superfamily II DNA and RNA helicase	J	Contig642	1613	COG0513	67	7e-12
Superfamily II DNA and RNA helicase	J	Contig653	2207	COG0513	253	3e-68
Translation elongation factor EF-1alpha (GTPase)	J	Contig543	206	COG5256	254	6e-69
Translation elongation factor EF-1alpha (GTPase)	J	Contig601	770	COG5256	102	7e-23
Translation elongation factor EF-1alpha (GTPase)	J	Contig620	1075	COG5256	78	2e-15
Translation elongation factor EF-1alpha (GTPase)	J	Contig621	1104	COG5256	115	1e-26
Translation elongation factor EF-1alpha (GTPase)	J	Contig637	1427	COG5256	64	2e-11
Translation elongation factor EF-1alpha (GTPase)	J	Contig656	2446	COG5256	95	1e-20

TRANSLATION FACTORS AND ENZYMES INVOLVED IN TRANSLATION

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
GTPase - translation elongation factors	J	Contig543	206	COG0050	691	0.0
GTPase - translation elongation factors	J	Contig601	770	COG0050	113	3e-26
GTPase - translation elongation factors	J	Contig620	1075	COG0050	87	5e-18
GTPase - translation elongation factors	J	Contig621	1104	COG0050	101	1e-22
GTPase - translation elongation factors	J	Contig637	1427	COG0050	66	6e-12
GTPase - translation elongation factors	J	Contig656	2446	COG0050	95	2e-20
Methionine aminopeptidase	J	Contig653	2153	COG0024	305	2e-84
Methionine aminopeptidase	J	Contig653	2239	COG0024	114	1e-26
Methionyl-tRNA formyltransferase	J	Contig634	1366	COG0223	93	1e-20
Methionyl-tRNA formyltransferase	J	Contig642	1597	COG0223	382	1.0e-107
N-formylmethionyl-tRNA deformylase	J	Contig558	299	COG0242	160	6e-41
N-formylmethionyl-tRNA deformylase	J	Contig642	1596	COG0242	163	5e-42
Peptidyl-tRNA hydrolase	J	Contig642	1612	COG0193	253	6e-69
Protein chain release factor A	J	Contig520	103	COG0216	81	3e-17
Protein chain release factor A	J	Contig532	137	COG0216	535	1.0e-153
Protein chain release factor B	J	Contig520	103	COG1186	78	3e-16
Protein chain release factor B	J	Contig532	137	COG1186	188	6e-49
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	J	Contig604	815	COG0231	147	5e-37
Translation elongation factors (GTPase)	J	Contig543	206	COG0480	94	2e-20
Translation elongation factors (GTPase)	J	Contig601	770	COG0480	143	3e-35
Translation elongation factors (GTPase)	J	Contig618	1037	COG0480	40	2e-04
Translation elongation factors (GTPase)	J	Contig620	1075	COG0480	93	7e-20
Translation elongation factors (GTPase)	J	Contig621	1104	COG0480	143	4e-35
Translation elongation factors (GTPase)	J	Contig637	1427	COG0480	265	6e-72
Translation elongation factors (GTPase)	J	Contig656	2446	COG0480	393	1.0e-110
Translation initiation factor 1 (IF-1)	J	Contig595	691	COG0361	105	7e-25
Translation initiation factor 2 alpha subunit (eIF-2alpha)	J	Contig558	297	COG1093	60	5e-10
Translation initiation factor 2 alpha subunit (eIF-2alpha)	J	Contig564	354	COG1093	47	4e-06
Translation initiation factor 2 alpha subunit (eIF-2alpha)	J	Contig579	507	COG1093	40	5e-04
Translation initiation factor 2 alpha subunit (eIF-2alpha)	J	Contig642	1617	COG1093	64	5e-12
Translation initiation factor 2 alpha subunit (eIF-2alpha)	J	Contig654	2311	COG1093	65	2e-12
Translation initiation factor 2 (IF-2; GTPase)	J	Contig514	79	COG0532	49	4e-07
Translation initiation factor 2 (IF-2; GTPase)	J	Contig543	206	COG0532	84	2e-17
Translation initiation factor 2 (IF-2; GTPase)	J	Contig601	770	COG0532	80	4e-16
Translation initiation factor 2 (IF-2; GTPase)	J	Contig618	1037	COG0532	42	8e-05
Translation initiation factor 2 (IF-2; GTPase)	J	Contig620	1075	COG0532	696	0.0
Translation initiation factor 2 (IF-2; GTPase)	J	Contig621	1104	COG0532	101	2e-22
Translation initiation factor 2 (IF-2; GTPase)	J	Contig636	1408	COG0532	46	8e-06
Translation initiation factor 2 (IF-2; GTPase)	J	Contig637	1427	COG0532	60	3e-10
Translation initiation factor 2 (IF-2; GTPase)	J	Contig656	2446	COG0532	81	2e-16
Translation initiation factor 3 (IF-3)	J	Contig563	339	COG0290	224	3e-60

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig514	79	COG5257	35	0.007
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig543	206	COG5257	166	2e-42
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig601	770	COG5257	60	6e-10
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig620	1075	COG5257	70	7e-13
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig621	1104	COG5257	77	3e-15
Translation initiation factor 2 gamma subunit (eIF-2gamma; GTPase)	J	Contig656	2446	COG5257	66	1e-11
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig532	134	COG2519	40	1e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig532	138	COG2519	42	5e-05
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig612	941	COG2519	54	2e-08
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig628	1234	COG2519	57	1e-09
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig642	1598	COG2519	40	3e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig654	2288	COG2519	41	2e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig656	2458	COG2519	40	1e-04
tRNA(1-methyladenosine) methyltransferase and related methyltransferase	J	Contig657	2505	COG2519	48	3e-07
tRNA and rRNA cytosine-C5-methylase	J	Contig574	444	COG0144	37	0.002
tRNA and rRNA cytosine-C5-methylase	J	Contig601	778	COG0144	40	1e-04
tRNA and rRNA cytosine-C5-methylase	J	Contig619	1058	COG0144	37	0.003
tRNA and rRNA cytosine-C5-methylase	J	Contig642	1598	COG0144	326	3e-90
tRNA and rRNA cytosine-C5-methylase	J	Contig654	2288	COG0144	239	4e-64
tRNA delta(2)-isopentenylpyrophosphate transferase	J	Contig589	614	COG0324	334	3e-93
tRNA delta(2)-isopentenylpyrophosphate transferase	J	Contig603	814	COG0324	37	0.003
tRNA-dihydrouridine synthase	J	Contig498	41	COG0042	325	3e-90
tRNA-dihydrouridine synthase	J	Contig594	668	COG0042	40	2e-04
tRNA-dihydrouridine synthase	J	Contig606	844	COG0042	72	4e-14
tRNA-dihydrouridine synthase	J	Contig643	1663	COG0042	245	3e-66
tRNA-dihydrouridine synthase	J	Contig644	1689	COG0042	37	0.002
tRNA-(guanine-N1)-methyltransferase	J	Contig656	2427	COG0336	173	3e-45
tRNA nucleotidyltransferase/poly(A) polymerase	J	Contig486	29	COG0617	34	0.010
tRNA nucleotidyltransferase/poly(A) polymerase	J	Contig486	30	COG0617	242	2e-65
Truncated possibly inactive lysyl-tRNA synthetase (class II)	J	Contig512	74	COG2269	75	4e-15
Truncated possibly inactive lysyl-tRNA synthetase (class II)	J	Contig512	75	COG2269	116	5e-28
Truncated possibly inactive lysyl-tRNA synthetase (class II)	J	Contig588	598	COG2269	54	2e-08
Truncated possibly inactive lysyl-tRNA synthetase (class II)	J	Contig612	948	COG2269	59	9e-10
Uncharacterized domain/protein associated with RNAses G and E	J	Contig574	447	COG3557	269	6e-74

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