BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig565
(5878 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 170 2e-42
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 170 bits (86), Expect = 2e-42
Identities = 111/118 (94%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 243 tgggttcccccattcggaaatctctggatcatagcttacgtacagctccccaaagcatat 302
|||||| ||||||||||||||||| |||||| ||||| | ||||||||||| ||||||||
Sbjct: 129 tgggtttccccattcggaaatctccggatcaaagcttgc-tacagctccccgaagcatat 71
Query: 303 cggtgttagtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cggtgttcgtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 13
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2498
Number of Sequences: 1398
Number of extensions: 2498
Number of successful extensions: 411
Number of sequences better than 1.0e-40: 1
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 2
length of query: 5878
length of database: 1,019,713
effective HSP length: 16
effective length of query: 5862
effective length of database: 997,345
effective search space: 5846436390
effective search space used: 5846436390
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 84 (167.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig597
(15,208 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 561 e-159
B.stearoth Bacillus stearothermophilus. 2927 bp 507 e-143
Fra.sp. Frankia sp.. 3099 bp 349 1e-95
Stm.griseu Streptomyces griseus. 3129 bp 337 4e-92
Stm.ambofa Streptomyces ambofaciens. 3129 bp 329 9e-90
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 327 4e-89
Flx.flexil Flexibacter flexilis. 2818 bp 327 4e-89
Mic.luteus Micrococcus luteus. 3093 bp 315 1e-85
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 311 2e-84
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 303 5e-82
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 561 bits (283), Expect = e-159
Identities = 406/443 (91%), Gaps = 3/443 (0%)
Strand = Plus / Minus
Query: 14768 tggttaagtcctcgatcgattagtatcagtccgctccatacatcactgtacttccactcc 14827
||||||||||||||||||||||||||| ||| ||||||| | | |||||||| |
Sbjct: 2926 tggttaagtcctcgatcgattagtatctgtcagctccatgtgttgccacacttccacctc 2867
Query: 14828 tgacctatctacctgatcatctctcagggatcttactttcttaaagaaatgggaaatctc 14887
|||||||| |||||||||||| ||||||||||| ||| ||| ||| |||||||||||
Sbjct: 2866 agacctatcaacctgatcatctttcagggatcttgcttccttgcggaa-tgggaaatctc 2808
Query: 14888 atcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatagcta 14947
||||||||| |||||||| |||||||||||||||| ||||||| ||| |||||||||
Sbjct: 2807 atcttgaggggggcttcatgcttagatgctttcagcacttatcccgtccgcacatagcta 2748
Query: 14948 cccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatcccggtcctct 15007
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2747 cccagcgatgcccttggcagaacaactggtacaccagcggtgcgtccatcccggtcctct 2688
Query: 15008 cgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgt 15067
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2687 cgtactaaggacagctcctctcaaatttccagcgcccgcgacggatagggaccgaactgt 2628
Query: 15068 ctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttg 15127
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2627 ctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttg 2568
Query: 15128 ggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa-ctccccgtcg 15186
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 2567 ggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaacctccccgtcg 2508
Query: 15187 atgtgga-ctcttgggggagata 15208
||||||| |||||||||||||||
Sbjct: 2507 atgtggagctcttgggggagata 2485
>B.stearoth Bacillus stearothermophilus. 2927 bp
Length = 2927
Score = 507 bits (256), Expect = e-143
Identities = 314/332 (94%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 14877 tgggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttcc 14936
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||
Sbjct: 2817 tgggaaatctcatcttgaggggggcttcacgcttagatgctttcagcgcttatcccgtcc 2758
Query: 14937 ctacatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccat 14996
||||||||||||||| ||||| |||| | |||||||||||||||||||| ||||||
Sbjct: 2757 gcacatagctacccagcggtgcccctggcgggacaactggtacaccagcggtgcgtccat 2698
Query: 14997 cccggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagg 15056
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2697 cccggtcctctcgtactaaggacagctcctctcaaatttcctgcgcccgcgacggatagg 2638
Query: 15057 gaccgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacag 15116
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2637 gaccgaactgtctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacag 2578
Query: 15117 cccaacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa 15176
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2577 cccaacccttgggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaa 2518
Query: 15177 -ctccccgtcgatgtggactcttgggggagat 15207
|||||||||||||||||||||||||||||||
Sbjct: 2517 cctccccgtcgatgtggactcttgggggagat 2486
>Fra.sp. Frankia sp.. 3099 bp
Length = 3099
Score = 349 bits (176), Expect = 1e-95
Identities = 273/304 (89%), Gaps = 1/304 (0%)
Strand = Plus / Minus
Query: 14899 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 14958
|||||| | ||||||||||||||||| ||||||||||| || |||| | ||||| ||||
Sbjct: 2967 ggcttcccgcttagatgctttcagcggttatcccttccgaacgtagccaaccagccatgc 2908
Query: 14959 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 15018
|||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2907 ccttggcagaacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2848
Query: 15019 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 15078
|||| | |||||| | ||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 2847 cagcccttctcaagtctcctgcgcgcgcggcggatagggaccgaactgtctcacgacgtt 2788
Query: 15079 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 15138
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2787 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggacctactcc 2728
Query: 15139 agccccaggatgcgacgagccgacatcgaggtgccaaa-ctccccgtcgatgtggactct 15197
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 2727 agccccaggatgcgacgagccgacatcgaggtgccaaaccttgccgtcgatatggactct 2668
Query: 15198 tggg 15201
||||
Sbjct: 2667 tggg 2664
>Stm.griseu Streptomyces griseus. 3129 bp
Length = 3129
Score = 337 bits (170), Expect = 4e-92
Identities = 276/310 (89%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 14899 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 14958
|||||| | ||||||||||||||||| |||||| |||| || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatcctttccgaacgtagccaaccagccatgc 2929
Query: 14959 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 15018
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 15019 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 15078
|||| | |||||| |||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaatattcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 15079 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 15138
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 15139 agccccaggatgcgacgagccgacatcgaggtgccaaa-ctccccgtcgatgtggactct 15197
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 15198 tgggggagat 15207
||||| ||||
Sbjct: 2688 tggggaagat 2679
>Stm.ambofa Streptomyces ambofaciens. 3129 bp
Length = 3129
Score = 329 bits (166), Expect = 9e-90
Identities = 275/310 (88%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 14899 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 14958
|||||| | ||||||||||||||||| |||||||| || || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatccctcccgaacgtagccaaccagccatgc 2929
Query: 14959 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 15018
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 15019 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 15078
|||| | |||||| ||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaagactcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 15079 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 15138
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 15139 agccccaggatgcgacgagccgacatcgaggtgccaaa-ctccccgtcgatgtggactct 15197
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 15198 tgggggagat 15207
||||| ||||
Sbjct: 2688 tggggaagat 2679
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end, 5S
ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 327 bits (165), Expect = 4e-89
Identities = 287/325 (88%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 14885 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 14944
||||||||||||| |||||| ||||||||||||||||||| |||||| |||| ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatcctttccgtacttag 536
Query: 14945 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 15003
||||||||| | || |||||| || |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacaataactggtacaccagaggtgcgtctctcccggtc 476
Query: 15004 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 15063
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 15064 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 15123
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 15124 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa-ctcccc 15182
|||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 15183 gtcgatgtggactcttgggggagat 15207
||||||||| |||||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagat 271
>Flx.flexil Flexibacter flexilis. 2818 bp
Length = 2818
Score = 327 bits (165), Expect = 4e-89
Identities = 290/331 (87%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 14878 gggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccc 14937
||||| |||||||||| || | | ||| ||||||||||||||||| ||||| |||||
Sbjct: 2775 gggaattctcatcttggggcgagtttcgtacttagatgctttcagcacttatctcttccg 2716
Query: 14938 tacatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatc 14997
|| ||||||| | ||||||| || |||| ||||| | ||||||||||||| ||||| |
Sbjct: 2715 cacttagctactcggcaatgcactgggcaatacaaccgatacaccagcggtacgtccaac 2656
Query: 14998 ccggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggataggg 15057
|||||||||||||||||||| |||| || |||||| |||| |||||||| || |||||||
Sbjct: 2655 ccggtcctctcgtactaaggtcagcccccctcaaaattcctacgcccgcaacagataggg 2596
Query: 15058 accgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagc 15117
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 2595 accgaactgtctcacgacgttctgaacccagctcgcgtgccactttaatcggcgaanagn 2536
Query: 15118 ccaacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa- 15176
||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct: 2535 ccaacccttgggaccttctccagccccaggatgtgacgagccgacatcgaggtgccaaac 2476
Query: 15177 ctccccgtcgatgtggactcttgggggagat 15207
||||||||||||||| ||||||||||||||
Sbjct: 2475 ctccccgtcgatgtgagctcttgggggagat 2445
>Mic.luteus Micrococcus luteus. 3093 bp
Length = 3093
Score = 315 bits (159), Expect = 1e-85
Identities = 282/323 (87%)
Strand = Plus / Minus
Query: 14879 ggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccct 14938
||||||||||||| || | |||||| | ||||||||||||||||| |||||| | ||
Sbjct: 2973 ggaaatctcatctcgaagccggcttcccgcttagatgctttcagcggttatccatcccga 2914
Query: 14939 acatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatcc 14998
|| |||||| |||| |||| | |||| | ||||||| | ||||| ||| |||| |||
Sbjct: 2913 acgtagctaatcagccatgcacctggcggtacaactgacataccagaggttcgtccgtcc 2854
Query: 14999 cggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggataggga 15058
|||||||||||||||| |||||| | ||||||||||||||||| ||| |||||||||
Sbjct: 2853 cggtcctctcgtactagggacagaccttctcaaatttccaacgcgcgcagaggataggga 2794
Query: 15059 ccgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcc 15118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2793 ccgaactgtctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacagcc 2734
Query: 15119 caacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaact 15178
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 caacccttgggacctactccagccccaggatgcgacgagccgacatcgaggtgccaaaca 2674
Query: 15179 ccccgtcgatgtggactcttggg 15201
|||||||| ||||||||||||
Sbjct: 2673 tgccgtcgatatggactcttggg 2651
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal
RNA gene, complete cds. 713 bp
Length = 713
Score = 311 bits (157), Expect = 2e-84
Identities = 285/325 (87%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 14885 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 14944
||||||||||||| |||||| ||||||||||||||||||| |||||| | || ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatccttcccgtacttag 536
Query: 14945 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 15003
||||||||| | || |||||| | |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacgataactggtacaccagaggtgcgtctctcccggtc 476
Query: 15004 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 15063
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 15064 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 15123
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 15124 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa-ctcccc 15182
|||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 15183 gtcgatgtggactcttgggggagat 15207
||||||||| |||||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagat 271
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 303 bits (153), Expect = 5e-82
Identities = 284/325 (87%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 14885 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 14944
|||||||||||||||||||| ||||||||||||||||||| |||||| ||| || |||
Sbjct: 2759 ctcatcttgaggtgggcttcccacttagatgctttcagcggttatccactccacacgtag 2700
Query: 14945 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 15003
||||||||| | || |||||| | |||||||||||||||||| || | ||||||||
Sbjct: 2699 ctacccagcgtttaccgttggcacgataactggtacaccagcggtgcgttcctcccggtc 2640
Query: 15004 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 15063
||||||||||| ||| | ||||||||| || ||||| || |||||| ||||||||
Sbjct: 2639 ctctcgtactagggagaaatcctctcaatactcttacgcctgcaccggatatggaccgaa 2580
Query: 15064 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 15123
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 2579 ctgtctcacgacgttctgaacccagctcacgtaccgctttaatgggcgaacagcccaacc 2520
Query: 15124 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa-ctcccc 15182
||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||| |
Sbjct: 2519 cttgggaccgacttcagccccaggttgcgatgagccgacatcgaggtgccaaacctcctc 2460
Query: 15183 gtcgatgtggactcttgggggagat 15207
||||||||| |||||||| ||||||
Sbjct: 2459 gtcgatgtgaactcttggaggagat 2435
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6616
Number of Sequences: 1398
Number of extensions: 6616
Number of successful extensions: 859
Number of sequences better than 1.0e-40: 36
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 76
length of query: 15,208
length of database: 1,019,713
effective HSP length: 17
effective length of query: 15,191
effective length of database: 995,947
effective search space: 15129430877
effective search space used: 15129430877
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 84 (167.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig604
(8629 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 1455 0.0
B.stearoth Bacillus stearothermophilus. 2927 bp 1308 0.0
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 507 e-143
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 492 e-139
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 476 e-134
Fra.sp. Frankia sp.. 3099 bp 416 e-116
Stm.ambofa Streptomyces ambofaciens. 3129 bp 414 e-115
Flx.flexil Flexibacter flexilis. 2818 bp 410 e-114
Stm.griseu Streptomyces griseus. 3129 bp 406 e-113
T.thermoph Thermus thermophilus HB8. 2914 bp 394 e-109
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 1455 bits (734), Expect = 0.0
Identities = 1060/1158 (91%), Gaps = 8/1158 (0%)
Strand = Plus / Minus
Query: 4736 tggttaagtcctcgatcgattagtatcagtccgctccatacatcactgtacttccactcc 4795
||||||||||||||||||||||||||| ||| ||||||| | | |||||||| |
Sbjct: 2926 tggttaagtcctcgatcgattagtatctgtcagctccatgtgttgccacacttccacctc 2867
Query: 4796 tgacctatctacctgatcatctctcagggatcttactttcttaaagaaatgggaaatctc 4855
|||||||| |||||||||||| ||||||||||| ||| ||| ||| |||||||||||
Sbjct: 2866 agacctatcaacctgatcatctttcagggatcttgcttccttgcggaa-tgggaaatctc 2808
Query: 4856 atcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatagcta 4915
||||||||| |||||||| |||||||||||||||| ||||||| ||| |||||||||
Sbjct: 2807 atcttgaggggggcttcatgcttagatgctttcagcacttatcccgtccgcacatagcta 2748
Query: 4916 cccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatcccggtcctct 4975
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2747 cccagcgatgcccttggcagaacaactggtacaccagcggtgcgtccatcccggtcctct 2688
Query: 4976 cgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgt 5035
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2687 cgtactaaggacagctcctctcaaatttccagcgcccgcgacggatagggaccgaactgt 2628
Query: 5036 ctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttg 5095
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2627 ctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttg 2568
Query: 5096 ggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcg 5155
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2567 ggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaacctccccgtcg 2508
Query: 5156 atgtgga-ctcttgggggagataagcctgttatccccaggggtagcttttatccgttgag 5214
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2507 atgtggagctcttgggggagataagcctgttatcccc-ggggtagcttttatccgttgag 2449
Query: 5215 cgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcccctgctcga 5274
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2448 cgatggcccttccatgcggaaccaccggatcactaagcccgactttcgt-ccctgctcga 2390
Query: 5275 cttgtttggtctcgcaagtcaagctcccttctgccttaacaactcttcgaaatgatttcc 5334
|||| | |||||||| |||||||||||||| |||||| || ||||| || ||||||||||
Sbjct: 2389 cttg-taggtctcgc-agtcaagctcccttgtgcctttac-actctgcg-aatgatttcc 2334
Query: 5335 aaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagt 5394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 aaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagt 2274
Query: 5395 caaactgcccatctgacactgtctcccaccacgattagtggtgcgggttagagtggccat 5454
||||||||||| ||||||||||||||| | |||| || | | |||||||| | | ||
Sbjct: 2273 caaactgcccacctgacactgtctccccgcccgataagggcggggggttagaaggtcaat 2214
Query: 5455 aacgcaggggtagtatcccaccagcgcctccatcgaaactagcgttccgatttctacggc 5514
| || ||||||||||||||| ||||||| |||| || ||| |||| |||| | |||
Sbjct: 2213 acagccagggtagtatcccaccgatgcctccaccgaagctggcgctccggtttccaaggc 2154
Query: 5515 tcctacctatcctgtacatgcggtacagacactcaatatcaaactacagtaaagctccat 5574
|||||||||||||||||| || |||| | ||||||||| || |||||||||||||
Sbjct: 2153 tcctacctatcctgtacaagctgtaccaaacttcaatatcaggctgcagtaaagctccac 2094
Query: 5575 ggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtactaaaatttcaccga 5634
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2093 ggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtactataatttcaccga 2034
Query: 5635 gtctctcgttgagacagtgcccaaatcgttacgcctttcgtgcgggtcggaacttacccg 5694
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 2033 gtctctcgttgagacagcgcccagatcgttgcgcctttcgtgcgggtcggaacttacccg 1974
Query: 5695 acaaggaatttcgctaccttaggaccgttatagttacggccgccgtttactggggcttca 5754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 acaaggaatttcgctaccttaggaccgttatagttacggccgccgtttactggggcttca 1914
Query: 5755 attcgtaccttcgcttgcgctaagcactcctcttaaccttccagcaccgggcaggcgtca 5814
||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1913 attcgcaccttcgcttacgctaagcgctcctcttaaccttccagcaccgggcaggcgtca 1854
Query: 5815 gcccctatacttcatcttacgattttgcagagacctgtgtttttgataaacagtcgcttg 5874
||||||||||||| |||||| || ||||||||||||||||||| ||||||||||| ||
Sbjct: 1853 gcccctatacttcgccttacggcttcgcagagacctgtgtttttgctaaacagtcgcctg 1794
Query: 5875 ggcctattcactgcggct 5892
||||||||||||||||||
Sbjct: 1793 ggcctattcactgcggct 1776
Score = 971 bits (490), Expect = 0.0
Identities = 723/798 (90%), Gaps = 2/798 (0%)
Strand = Plus / Minus
Query: 6457 cagcttcggtaatatgtttagccccggtacattttcggcgcagggtcactcgactagtga 6516
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 1204 cagcttcggtgatacgtttagccccggtacattttcggcgcagagtcactcgaccagtga 1145
Query: 6517 gctattacgcactctttaaatgatggctgcttctaagccaacatcctagttgtctgtgca 6576
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct: 1144 gctattacgcactctttaaatggtggctgcttctaagccaacatcctggttgtctaagca 1085
Query: 6577 accccacatccttttccacttaacatatattttgggaccttagctggtggtctgggctgt 6636
|| ||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||
Sbjct: 1084 actccacatccttttccacttaacgtatactttgggacctcagctggcggtctgggctgt 1025
Query: 6637 ttccctttcgactatggatcttatcactcacagtctgactcccggatatgaatgaatggc 6696
|||||||||||||| |||||||||||||| ||||||||||||| || | | | ||||
Sbjct: 1024 ttccctttcgactacggatcttatcactcgcagtctgactcccaaggataagtcattggc 965
Query: 6697 attcggagtttatctgaattcggtaacccgagatgggcccctagtccaaacagtgctcta 6756
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 964 attcggagtttgactgaattcggtaacccggtgagggcccctagtccaatcagtgctcta 905
Query: 6757 cctccatcattctcaattccgaggctagccctaaagctatttcggagagaaccagctatc 6816
|||||| | ||| | | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 904 cctccaagactcttacctt-gaggctagccctagagctatttcggagagaaccagctatc 846
Query: 6817 tccaagttcgtttggaatttctccgctacccacacctcatccccgcacttttcaacgtac 6876
|||| ||||| |||| ||||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 845 tccaggttcgattggcatttcacccctacccacacctcatccccgcacttttcaacgtgc 786
Query: 6877 gtgggttcggtcctccagtgcgttttaccgcaccttcaacctggacatgggtagatcaca 6936
|||||||||| |||||| | || ||||| | ||||| ||||||||||||||||||||
Sbjct: 785 gtgggttcgggcctccattcagtgttacctgaacttcaccctggacatgggtagatcacc 726
Query: 6937 tggtttcgggtctacgactacatactcaaacgccctattcagactcgctttcgctgcggc 6996
|||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 725 tggtttcgggtctacgaccacgtactcatgcgccctattcagactcgctttcgctgcggc 666
Query: 6997 tccgtctcttcaacttaacctcgcatgcaatcgtaactcgccggttcattctacaaaagg 7056
|||| ||||| |||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 665 tccgcatcttctgcttaaccttgcacgggatcgtaactcgccggttcattctacaaaagg 606
Query: 7057 cacgccatcacccattaacgggctttgacttgttgtaggcacacggtttcaggttctatt 7116
|||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||| ||
Sbjct: 605 cacgccatcaccg-ttaacgggctctgactacttgtaggcacacggtttcaggatctctt 547
Query: 7117 tcactccccttccggggtgcttttcacctttccctcacggtactggttcactatcggtca 7176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcactccccttccggggtgcttttcacctttccctcacggtactggttcactatcggtca 487
Query: 7177 ctagggagtatttagccttgggagatggtcctcccggattccgacggaatttctcgtgtt 7236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 486 ctagggagtatttagccttgggagatggtcctcccggattccgacggaatttcacgtgtt 427
Query: 7237 ccgccgtactcaggatcc 7254
||||||||||||||||||
Sbjct: 426 ccgccgtactcaggatcc 409
Score = 254 bits (128), Expect = 3e-67
Identities = 199/220 (90%), Gaps = 2/220 (0%)
Strand = Plus / Minus
Query: 6216 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 6275
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 1442 ggtacaggaatatcaacctgttgtccatcgcctacgcctttcggcctcggcttaggtccc 1383
Query: 6276 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 6335
||||||||||| ||||||||||||||| |||||| |||||| ||||||||||| |||||
Sbjct: 1382 gactaaccctgagcggacgagccttcctcaggaacccttaggcattcggtgga-gggatt 1324
Query: 6336 ctcacctgtc-tttcgctactcataccggcattctcacttctaagcgctccagcagtcct 6394
|||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1323 ctcacccctcttttcgctactcataccggcattctcacttctaagccgtccaccagtcct 1264
Query: 6395 cacgatctgccttcgacgcccttagaacgctctcctacca 6434
|| |||| |||| |||||||||||||||||||||||
Sbjct: 1263 tccggtctggcttcacagcccttagaacgctctcctacca 1224
Score = 226 bits (114), Expect = 6e-59
Identities = 175/194 (90%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 5905 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctct 5964
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1752 agcaccccttctcccgaagttacggggtcattttgccgagttctttaacgagagttctct 1693
Query: 5965 cgctcaccttaggattctctcctcgactacctgtgtcggtttgcggtacgggccgctgtt 6024
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct: 1692 cgatcaccttaggattctctcctcgcctacctgtgacggtttgcggtacgggcacctctc 1633
Query: 6025 ttctcactagaagcttttctcggcagtgtgacatcaggaacttcggtactattatttccc 6084
||| ||||| |||||||| ||||||||| |||||||||||| |||||| |||||| |
Sbjct: 1632 acctcgctagaggcttttcttggcagtgtggaatcaggaacttccgtacta-tatttcgc 1574
Query: 6085 tccccatcacagct 6098
|| |||||||||||
Sbjct: 1573 tcgccatcacagct 1560
Score = 170 bits (86), Expect = 3e-42
Identities = 111/118 (94%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 7526 tgggttcccccattcggaaatctctggatcatagcttacgtacagctccccaaagcatat 7585
|||||| ||||||||||||||||| |||||| ||||| | ||||||||||| ||||||||
Sbjct: 129 tgggtttccccattcggaaatctccggatcaaagcttgc-tacagctccccgaagcatat 71
Query: 7586 cggtgttagtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 7643
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cggtgttcgtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 13
>B.stearoth Bacillus stearothermophilus. 2927 bp
Length = 2927
Score = 1308 bits (660), Expect = 0.0
Identities = 957/1048 (91%), Gaps = 6/1048 (0%)
Strand = Plus / Minus
Query: 4845 tgggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttcc 4904
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||
Sbjct: 2817 tgggaaatctcatcttgaggggggcttcacgcttagatgctttcagcgcttatcccgtcc 2758
Query: 4905 ctacatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccat 4964
||||||||||||||| ||||| |||| | |||||||||||||||||||| ||||||
Sbjct: 2757 gcacatagctacccagcggtgcccctggcgggacaactggtacaccagcggtgcgtccat 2698
Query: 4965 cccggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagg 5024
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2697 cccggtcctctcgtactaaggacagctcctctcaaatttcctgcgcccgcgacggatagg 2638
Query: 5025 gaccgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacag 5084
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2637 gaccgaactgtctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacag 2578
Query: 5085 cccaacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa 5144
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2577 cccaacccttgggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaa 2518
Query: 5145 cctccccgtcgatgtggactcttgggggagataagcctgttatccccaggggtagctttt 5204
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 2517 cctccccgtcgatgtggactcttgggggagatcagcctgttatcccc-ggggtagctttt 2459
Query: 5205 atccgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtc 5264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 atccgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgt- 2400
Query: 5265 ccctgctcgacttgtttggtctcgcaagtcaagctcccttctgccttaacaactcttcga 5324
||||||||||| || | ||||||| |||||||||||||| |||||| | ||||| ||
Sbjct: 2399 ccctgctcgacctg-tccgtctcgc-agtcaagctcccttgtgcctttgc-actctccg- 2344
Query: 5325 aatgatttccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcga 5384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2343 aatgatttccaaccattctgagggaacctttgggcgcctccgttaccttttgggaggcga 2284
Query: 5385 ccgccccagtcaaactgcccatctgacactgtctcccaccacgattagtggtgcgggtta 5444
|||||||||||||||||||| |||||||||||||||||| || | || |||||||||||
Sbjct: 2283 ccgccccagtcaaactgcccgcctgacactgtctcccaccccgctaaggggtgcgggtta 2224
Query: 5445 gagtggccataacgcaggggtagtatcccaccagcgcctccatcgaaactagcgttccga 5504
|| | | ||| ||| |||| |||||||||| |||||||| |||| || ||| ||||
Sbjct: 2223 gaatttcaatatcgccagggtggtatcccaccgccgcctccaccgaagctggcgctccgg 2164
Query: 5505 tttctacggctcctacctatcctgtacatgcggtacagacactcaatatcaaactacagt 5564
||| |||||| |||||||||||||| ||| || | | || |||||| || ||||
Sbjct: 2163 cttcccaggctcccacctatcctgtacaagcgacaccaaaattccatatcaggctgcagt 2104
Query: 5565 aaagctccatggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtactaaa 5624
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2103 aaagctccacggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtagtata 2044
Query: 5625 atttcaccgagtctctcgttgagacagtgcccaaatcgttacgcctttcgtgcgggtcgg 5684
||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 2043 atttcaccgggtctctcgttgagacagcgcccaagtcgttacacctttcgtgcgggtcgg 1984
Query: 5685 aacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgtttac 5744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1983 aacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgtttac 1924
Query: 5745 tggggcttcaattcgtaccttcgcttgcgctaagcactcctcttaaccttccagcaccgg 5804
||||||||| |||| |||||||||| |||||||| |||| |||||||||||||||||||
Sbjct: 1923 tggggcttcggttcgcaccttcgcttccgctaagcgctccccttaaccttccagcaccgg 1864
Query: 5805 gcaggcgtcagcccctatacttcatcttacgattttgcagagacctgtgtttttgataaa 5864
||||| |||||||||||||| || ||||||| || ||||||||||||||||||||||||
Sbjct: 1863 gcaggtgtcagcccctatacgtcgccttacgacttcgcagagacctgtgtttttgataaa 1804
Query: 5865 cagtcgcttgggcctattcactgcggct 5892
||||||||||||||| || ||||||||
Sbjct: 1803 cagtcgcttgggccttttgtctgcggct 1776
Score = 902 bits (455), Expect = 0.0
Identities = 702/783 (89%), Gaps = 1/783 (0%)
Strand = Plus / Minus
Query: 6472 gtttagccccggtacattttcggcgcagggtcactcgactagtgagctattacgcactct 6531
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1191 gtttagccccggtacattttcggcgcagagtcactcgaccagtgagctattacgcactct 1132
Query: 6532 ttaaatgatggctgcttctaagccaacatcctagttgtctgtgcaaccccacatcctttt 6591
||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 1131 ttaaatggtggctgcttctaagccaacatcctggttgtctttgcaactccacatcctttt 1072
Query: 6592 ccacttaacatatattttgggaccttagctggtggtctgggctgtttccctttcgactat 6651
||||| ||| | | |||||| |||||||||| | |||||||||||||||| ||||| |
Sbjct: 1071 ccactgaacgtgcactttggggccttagctggcgatctgggctgtttccctctcgaccac 1012
Query: 6652 ggatcttatcactcacagtctgactcccggatatgaatgaatggcattcggagtttatct 6711
|||||||||||||| ||||||||||||||| || | | ||||||||||||||| ||
Sbjct: 1011 ggatcttatcactcgcagtctgactcccgggcataagtcgttggcattcggagtttgact 952
Query: 6712 gaattcggtaacccgagatgggcccctagtccaaacagtgctctacctccatcattctca 6771
| ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||
Sbjct: 951 gggttcggtaacccgatgagggcccctagcccaatcagtgctctacctccaacactctcc 892
Query: 6772 attccgaggctagccctaaagctatttcggagagaaccagctatctccaagttcgtttgg 6831
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 891 atcccgaggctagccctaaagctatttcggggagaaccagctatctccaagttcgattgg 832
Query: 6832 aatttctccgctacccacacctcatccccgcacttttcaacgtacgtgggttcggtcctc 6891
||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 831 catttcacccctacccacacctcatccccgcacttttcaacgtgcgtgggttcgggcctc 772
Query: 6892 cagtgcgttttaccgcaccttcaacctggacatgggtagatcacatggtttcgggtctac 6951
||| || ||||| |||||| |||||||||||||||||||| |||||||||||| ||
Sbjct: 771 cagccggtgttacccggccttcaccctggacatgggtagatcacctggtttcgggtcgac 712
Query: 6952 gactacatactcaaacgccctattcagactcgctttcgctgcggctccgtctcttcaact 7011
||| || |||| |||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct: 711 gacgacgtactttt-cgccctgttcagactcgctttcgctgcggctccgcctcttcggct 653
Query: 7012 taacctcgcatgcaatcgtaactcgccggttcattctacaaaaggcacgccatcacccat 7071
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 652 taacctcgcacgccatcgtcactcgccggttcattctacaaaaggcacgccatcacgcat 593
Query: 7072 taacgggctttgacttgttgtaggcacacggtttcaggttctatttcactccccttccgg 7131
|||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 592 gaacgcgctctgactacttgtaggcacacggtttcaggttctctttcactccccttccgg 533
Query: 7132 ggtgcttttcacctttccctcacggtactggttcactatcggtcactagggagtatttag 7191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 532 ggtgcttttcacctttccctcacggtactggtgcactatcggtcactagggagtatttag 473
Query: 7192 ccttgggagatggtcctcccggattccgacggaatttctcgtgttccgccgtactcagga 7251
|||||||||||||||||||| | ||||||||| ||||| ||||| |||||||||||||||
Sbjct: 472 ccttgggagatggtcctccctgcttccgacgggatttcccgtgtcccgccgtactcagga 413
Query: 7252 tcc 7254
|||
Sbjct: 412 tcc 410
Score = 244 bits (123), Expect = 2e-64
Identities = 196/219 (89%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 6216 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 6275
||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct: 1445 ggtacaggaatctcaacctgttgtccatcacctacgcctttcggcctcggcttaggtccc 1386
Query: 6276 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 6335
||||||||||| |||||||| |||||| |||||| |||||| | ||||| | | ||||||
Sbjct: 1385 gactaaccctgagcggacgaaccttcctcaggaacccttaggctttcggcgcagaggatt 1326
Query: 6336 ctcacctgt-ctttcgctactcataccggcattctcacttctaagcgctccagcagtcct 6394
||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1325 ctcacctctgttttcgctactcataccggcattctcacttctaagcgctccaccagtcct 1266
Query: 6395 cacgatctgccttcgacgcccttagaacgctctcctacc 6433
|| |||| |||| ||||||||||||||||| ||||||
Sbjct: 1265 tccggtctggcttcaacgcccttagaacgctcccctacc 1227
Score = 206 bits (104), Expect = 5e-53
Identities = 149/164 (90%)
Strand = Plus / Minus
Query: 5905 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctct 5964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctcc 1693
Query: 5965 cgctcaccttaggattctctcctcgactacctgtgtcggtttgcggtacgggccgctgtt 6024
||| | ||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct: 1692 cgcgcgccttaggattctctcctcgcctacctgtgtcggtttgcggtacgggcacctctt 1633
Query: 6025 ttctcactagaagcttttctcggcagtgtgacatcaggaacttc 6068
||| ||||| |||||||| |||||||||| ||| || |||||
Sbjct: 1632 ccctcgctagaggcttttcttggcagtgtgaaatcggggacttc 1589
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 507 bits (256), Expect = e-143
Identities = 494/564 (87%), Gaps = 7/564 (1%)
Strand = Plus / Minus
Query: 4853 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 4912
|||||||||||||||||||| ||||||||||||||||||| |||||| ||| || |||
Sbjct: 2759 ctcatcttgaggtgggcttcccacttagatgctttcagcggttatccactccacacgtag 2700
Query: 4913 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 4971
||||||||| | || |||||| | |||||||||||||||||| || | ||||||||
Sbjct: 2699 ctacccagcgtttaccgttggcacgataactggtacaccagcggtgcgttcctcccggtc 2640
Query: 4972 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 5031
||||||||||| ||| | ||||||||| || ||||| || |||||| ||||||||
Sbjct: 2639 ctctcgtactagggagaaatcctctcaatactcttacgcctgcaccggatatggaccgaa 2580
Query: 5032 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 5091
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 2579 ctgtctcacgacgttctgaacccagctcacgtaccgctttaatgggcgaacagcccaacc 2520
Query: 5092 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 5151
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 2519 cttgggaccgacttcagccccaggttgcgatgagccgacatcgaggtgccaaacctcctc 2460
Query: 5152 gtcgatgtggactcttgggggagataagcctgttatccccaggggtagcttttatccgtt 5211
||||||||| |||||||| |||||| ||||||||||||| | | ||| ||||||||||||
Sbjct: 2459 gtcgatgtgaactcttggaggagatcagcctgttatcccta-gagtaacttttatccgtt 2401
Query: 5212 gagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcccctgct 5271
|||||| |||||||||| | ||||| |||||||||||| ||||||||||| |||||||
Sbjct: 2400 gagcgacggcccttccactcagaaccgtcggatcactaaggccgactttcgt-ccctgct 2342
Query: 5272 cgacttgtttggtctcgcaagtcaagctcccttctgccttaacaactcttcgaaatgatt 5331
||||||| | ||||| || |||||||||||||| |||||| | |||| ||| |||||
Sbjct: 2341 cgacttg-taggtcttgc-agtcaagctcccttatgcctttgc-actcgtcg-gctgatt 2286
Query: 5332 tccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgcccc 5391
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2285 tccaaccagcctgagggaacctttgcgcgcctccgttaccttttaggaggcgaccgcccc 2226
Query: 5392 agtcaaactgcccatctgacactg 5415
|||||||||||||| |||| ||||
Sbjct: 2225 agtcaaactgcccacctgatactg 2202
Score = 202 bits (102), Expect = 8e-52
Identities = 180/206 (87%)
Strand = Plus / Minus
Query: 5548 caatatcaaactacagtaaagctccatggggtctttccgtcctgtcgcgggtaacctgca 5607
||||| ||| ||||||||||||| ||| ||||||||| |||| | || |||| | | |
Sbjct: 2071 caataccaagctacagtaaagcttcatagggtctttctgtccgggtgcaggtagtccgta 2012
Query: 5608 tcttcacaggtactaaaatttcaccgagtctctcgttgagacagtgcccaaatcgttacg 5667
||||||||| ||| ||||| ||||| ||||| |||||||| ||||| |||||||||
Sbjct: 2011 tcttcacagacactcctatttcgccgagcctctctctgagacagcgcccagatcgttacg 1952
Query: 5668 cctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgttatag 5727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 cctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgttatag 1892
Query: 5728 ttacggccgccgtttactggggcttc 5753
|||||||||||||| || ||||||||
Sbjct: 1891 ttacggccgccgttcaccggggcttc 1866
Score = 184 bits (93), Expect = 2e-46
Identities = 180/208 (86%), Gaps = 2/208 (0%)
Strand = Plus / Minus
Query: 7034 tcgccggttcattctacaaaaggcacgccatcacccattaa--cgggctttgacttgttg 7091
||||||| ||||||| ||| ||||||||| |||||| || | |||||| |||| |||
Sbjct: 604 tcgccggctcattcttcaacaggcacgccgtcacccgttgaatcgggctccgactgcttg 545
Query: 7092 taggcacacggtttcaggttctatttcactccccttccggggtgcttttcacctttccct 7151
|| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 taagctcacggtttcatgttctatttcactccccttccggggttcttttcacctttccct 485
Query: 7152 cacggtactggttcactatcggtcactagggagtatttagccttgggagatggtcctccc 7211
| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
Sbjct: 484 cgcggtactggttcactatcggtcacacaggagtatttagccttacgaggtggtcctcgc 425
Query: 7212 ggattccgacggaatttctcgtgttccg 7239
|||||| |||||||||| |||| ||||
Sbjct: 424 ggattcacacggaatttcacgtgctccg 397
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end,
5S ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 492 bits (248), Expect = e-139
Identities = 483/552 (87%), Gaps = 7/552 (1%)
Strand = Plus / Minus
Query: 4853 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 4912
||||||||||||| |||||| ||||||||||||||||||| |||||| |||| ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatcctttccgtacttag 536
Query: 4913 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 4971
||||||||| | || |||||| || |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacaataactggtacaccagaggtgcgtctctcccggtc 476
Query: 4972 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 5031
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 5032 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 5091
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 5092 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 5151
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 5152 gtcgatgtggactcttgggggagataagcctgttatccccaggggtagcttttatccgtt 5211
||||||||| ||||||||||||||| ||||||||||||| | | ||| ||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagatcagcctgttatcccta-gagtaacttttatccgtt 237
Query: 5212 gagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcccctgct 5271
|||||| |||||||||| ||| ||| ||||||||||||| ||||||||||| | ||| |
Sbjct: 236 gagcgacggcccttccactcggtaccgccggatcactaaggccgactttcgt-ctctgtt 178
Query: 5272 cgacttgtttggtctcgcaagtcaagctcccttctgccttaacaactcttcgaaatgatt 5331
||||||| | |||||| | |||||||||| ||| |||||| || ||||| || | |||||
Sbjct: 177 cgacttg-taggtctcac-agtcaagctctcttatgcctttac-actctacg-actgatt 122
Query: 5332 tccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgcccc 5391
||| |||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 121 tccgaccagcctgagagaacctttgcacgcctccgttactttttaggaggcgaccgcccc 62
Query: 5392 agtcaaactgcc 5403
||||||||||||
Sbjct: 61 agtcaaactgcc 50
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal
RNA gene, complete cds. 713 bp
Length = 713
Score = 476 bits (240), Expect = e-134
Identities = 481/552 (87%), Gaps = 7/552 (1%)
Strand = Plus / Minus
Query: 4853 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 4912
||||||||||||| |||||| ||||||||||||||||||| |||||| | || ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatccttcccgtacttag 536
Query: 4913 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 4971
||||||||| | || |||||| | |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacgataactggtacaccagaggtgcgtctctcccggtc 476
Query: 4972 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 5031
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 5032 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 5091
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 5092 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 5151
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 5152 gtcgatgtggactcttgggggagataagcctgttatccccaggggtagcttttatccgtt 5211
||||||||| ||||||||||||||| ||||||||||||| | | ||| ||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagatcagcctgttatcccta-gagtaacttttatccgtt 237
Query: 5212 gagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcccctgct 5271
|||||| |||||||||| ||| ||| ||||||||||||| ||||||||||| | ||| |
Sbjct: 236 gagcgacggcccttccactcggtaccgccggatcactaaggccgactttcgt-ctctgtt 178
Query: 5272 cgacttgtttggtctcgcaagtcaagctcccttctgccttaacaactcttcgaaatgatt 5331
||||||| | |||||| | |||||||||| ||| |||||| || ||||| || | |||||
Sbjct: 177 cgacttg-taggtctcac-agtcaagctctcttatgcctttac-actctacg-actgatt 122
Query: 5332 tccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgcccc 5391
||| |||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 121 tccgaccagcctgagagaacctttgcacgcctccgttactttttaggaggcgaccgcccc 62
Query: 5392 agtcaaactgcc 5403
||||||||||||
Sbjct: 61 agtcaaactgcc 50
>Fra.sp. Frankia sp.. 3099 bp
Length = 3099
Score = 416 bits (210), Expect = e-116
Identities = 325/362 (89%), Gaps = 1/362 (0%)
Strand = Plus / Minus
Query: 4867 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 4926
|||||| | ||||||||||||||||| ||||||||||| || |||| | ||||| ||||
Sbjct: 2967 ggcttcccgcttagatgctttcagcggttatcccttccgaacgtagccaaccagccatgc 2908
Query: 4927 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 4986
|||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2907 ccttggcagaacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2848
Query: 4987 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 5046
|||| | |||||| | ||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 2847 cagcccttctcaagtctcctgcgcgcgcggcggatagggaccgaactgtctcacgacgtt 2788
Query: 5047 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 5106
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2787 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggacctactcc 2728
Query: 5107 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 5166
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 2727 agccccaggatgcgacgagccgacatcgaggtgccaaaccttgccgtcgatatggactct 2668
Query: 5167 tgggggagataagcctgttatccccaggggtagcttttatccgttgagcgatggcccttc 5226
|||| |||| |||||||||||||| |||||| |||||||||||||||||| ||| ||||
Sbjct: 2667 tgggcaagatcagcctgttatcccc-ggggtaccttttatccgttgagcgacggcgcttc 2609
Query: 5227 ca 5228
||
Sbjct: 2608 ca 2607
Score = 170 bits (86), Expect = 3e-42
Identities = 140/158 (88%)
Strand = Plus / Minus
Query: 6216 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 6275
||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 1514 ggtacgggaatatcaacccgttatccatcgactacgcctgtcggcctcgccttaggtccc 1455
Query: 6276 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 6335
|||| |||||||||||| ||||| ||||||||| |||| ||||| ||| |||| || ||
Sbjct: 1454 gactcaccctgggcggattagcctgccccaggaacccttggtcatccggcggacgggttt 1395
Query: 6336 ctcacctgtctttcgctactcataccggcattctcact 6373
|||||| ||| |||||||||||| || |||||||||||
Sbjct: 1394 ctcacccgtcattcgctactcatgcctgcattctcact 1357
Score = 168 bits (85), Expect = 1e-41
Identities = 176/205 (85%), Gaps = 1/205 (0%)
Strand = Plus / Minus
Query: 5548 caatatcaaactacagtaaagctccatggggtctttccgtcctgtcgcgggtaacctgca 5607
||||||||| ||| ||||||| ||| ||||||||||||||||| |||| ||||| |||
Sbjct: 2292 caatatcaagctatagtaaaggtccc-ggggtctttccgtcctgccgcgcgtaacgagca 2234
Query: 5608 tcttcacaggtactaaaatttcaccgagtctctcgttgagacagtgcccaaatcgttacg 5667
|||| || ||| | |||||| |||||||| | |||||||||||| || ||||||||
Sbjct: 2233 tctttactcgtaatgcaatttcgccgagtctgtggttgagacagtgggaaagtcgttacg 2174
Query: 5668 cctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgttatag 5727
|| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2173 ccattcgtgcaggtcggaacttacccgacaaggaatttcgctaccttaggatggttatag 2114
Query: 5728 ttacggccgccgtttactggggctt 5752
|||| |||||||||||||| ||||
Sbjct: 2113 ttaccaccgccgtttactggcgctt 2089
>Stm.ambofa Streptomyces ambofaciens. 3129 bp
Length = 3129
Score = 414 bits (209), Expect = e-115
Identities = 361/409 (88%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 4867 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 4926
|||||| | ||||||||||||||||| |||||||| || || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatccctcccgaacgtagccaaccagccatgc 2929
Query: 4927 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 4986
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 4987 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 5046
|||| | |||||| ||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaagactcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 5047 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 5106
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 5107 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 5166
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 5167 tgggggagataagcctgttatccccaggggtagcttttatccgttgagcgatggcccttc 5226
||||| |||| |||||||||||||| |||||| |||||||||||||||||| ||| ||||
Sbjct: 2688 tggggaagatcagcctgttatcccc-ggggtaccttttatccgttgagcgacggcgcttc 2630
Query: 5227 catgcggaaccaccggatcactaagcccgactttcgtcccctgctcgac 5275
|| | ||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 2629 cacaagccaccgccggatcactagtcccgactttcgt-ccctgctcgac 2582
>Flx.flexil Flexibacter flexilis. 2818 bp
Length = 2818
Score = 410 bits (207), Expect = e-114
Identities = 377/434 (86%), Gaps = 2/434 (0%)
Strand = Plus / Minus
Query: 4846 gggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccc 4905
||||| |||||||||| || | | ||| ||||||||||||||||| ||||| |||||
Sbjct: 2775 gggaattctcatcttggggcgagtttcgtacttagatgctttcagcacttatctcttccg 2716
Query: 4906 tacatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatc 4965
|| ||||||| | ||||||| || |||| ||||| | ||||||||||||| ||||| |
Sbjct: 2715 cacttagctactcggcaatgcactgggcaatacaaccgatacaccagcggtacgtccaac 2656
Query: 4966 ccggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggataggg 5025
|||||||||||||||||||| |||| || |||||| |||| |||||||| || |||||||
Sbjct: 2655 ccggtcctctcgtactaaggtcagcccccctcaaaattcctacgcccgcaacagataggg 2596
Query: 5026 accgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagc 5085
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 2595 accgaactgtctcacgacgttctgaacccagctcgcgtgccactttaatcggcgaanagn 2536
Query: 5086 ccaacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaac 5145
||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2535 ccaacccttgggaccttctccagccccaggatgtgacgagccgacatcgaggtgccaaac 2476
Query: 5146 ctccccgtcgatgtggactcttgggggagataagcctgttatccccaggggtagctttta 5205
||||||||||||||| |||||||||||||| |||||||||| ||| ||||||
Sbjct: 2475 ctccccgtcgatgtgagctcttgggggagatcagcctgttat-nnnnnncgtacctttta 2417
Query: 5206 tccgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcc 5265
||| ||||||||||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct: 2416 tcctttgagcgatggcccttccatgcggaacnaccggatcactatgtcctactttcgt-a 2358
Query: 5266 cctgctcgacttgt 5279
||||||||||||||
Sbjct: 2357 cctgctcgacttgt 2344
Score = 256 bits (129), Expect = 6e-68
Identities = 276/320 (86%), Gaps = 4/320 (1%)
Strand = Plus / Minus
Query: 5562 agtaaagctccatggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtact 5621
||||||| | || ||||||||||||||| || ||||||| | |||||||||| | ||||
Sbjct: 2076 agtaaaggtgcacggggtctttccgtcccgttgcgggtangcggcatcttcaccgctact 2017
Query: 5622 aaaatttcaccgagtctctc-gttgagacagtgcccaaatcgttacgcctttcgtgcggg 5680
| ||||||||||| ||| | |||||||||| ||||| |||||||| || ||||||| ||
Sbjct: 2016 acaatttcaccga-actcacggttgagacagcgcccagatcgttacaccattcgtgcagg 1958
Query: 5681 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 5740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1957 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 1898
Query: 5741 ttactggggcttcaattcgtaccttcg-cttgcg-ctaagcactcctcttaaccttccag 5798
||||||||||||| |||| ||||| |||||| |||| | ||||||||||||||||
Sbjct: 1897 ttactggggcttcgattcaatgcttcgccttgcgactaacatcccctcttaaccttccag 1838
Query: 5799 caccgggcaggcgtcagcccctatacttcatcttacgattttgcagagacctgtgttttt 5858
||||||||||| ||||| || ||||||||| || || ||| ||| || | |||||||||
Sbjct: 1837 caccgggcaggtgtcaggccttatacttcaactctcgttttcgcaaagccatgtgttttt 1778
Query: 5859 gataaacagtcgcttgggcc 5878
| ||||||||||| ||||||
Sbjct: 1777 ggtaaacagtcgcctgggcc 1758
>Stm.griseu Streptomyces griseus. 3129 bp
Length = 3129
Score = 406 bits (205), Expect = e-113
Identities = 360/409 (88%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 4867 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 4926
|||||| | ||||||||||||||||| |||||| |||| || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatcctttccgaacgtagccaaccagccatgc 2929
Query: 4927 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 4986
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 4987 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 5046
|||| | |||||| |||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaatattcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 5047 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 5106
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 5107 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 5166
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 5167 tgggggagataagcctgttatccccaggggtagcttttatccgttgagcgatggcccttc 5226
||||| |||| |||||||||||||| |||||| |||||||||||||||||| || ||||
Sbjct: 2688 tggggaagatcagcctgttatcccc-ggggtaccttttatccgttgagcgacagcgcttc 2630
Query: 5227 catgcggaaccaccggatcactaagcccgactttcgtcccctgctcgac 5275
|| | || ||||||||||| |||||||||||| |||||||||||
Sbjct: 2629 cacaagccactgccggatcactagtcccgactttcgt-ccctgctcgac 2582
>T.thermoph Thermus thermophilus HB8. 2914 bp
Length = 2914
Score = 394 bits (199), Expect = e-109
Identities = 373/427 (87%), Gaps = 3/427 (0%)
Strand = Plus / Minus
Query: 4853 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 4912
||||||||| || ||||||| | ||||||||||||||||| ||||||||||| |||| |
Sbjct: 2794 ctcatcttggggcgggcttcccgcttagatgctttcagcggttatcccttccgcacatgg 2735
Query: 4913 ctacccagca-atgcccttggcagaacaactggtacaccagcggtaagtccatcccggtc 4971
||||||||| |||||| ||| | ||| |||| | ||||| ||| |||| | ||||||
Sbjct: 2734 ctacccagcttatgcccctggagggacagctgggaaaccagaggtgcgtcccttccggtc 2675
Query: 4972 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 5031
||||||||||| | | ||| || ||||| ||| |||||| | ||||||| |||||||
Sbjct: 2674 ctctcgtactaggaagagcccccctcaagcctcctgcgcccgtggcggatagagaccgaa 2615
Query: 5032 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 5091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 2555
Query: 5092 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 5151
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 cttgggaccttcttcagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 2495
Query: 5152 gtcgatgtggactcttgggggagataagcctgttatccccaggggtagcttttatccgtt 5211
| || ||||||| || ||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct: 2494 gccgctgtggacgctcgggggagatcagcctgttatcccc-ggggtaacttttatccgtt 2436
Query: 5212 gagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcccctgct 5271
|| |||||||||||||| ||| |||||||| |||||| ||||| |||||| ||||||||
Sbjct: 2435 gatcgatggcccttccacacgggaccaccggttcactaggcccggctttcg-cccctgct 2377
Query: 5272 cgacttg 5278
|| ||||
Sbjct: 2376 cggcttg 2370
Score = 176 bits (89), Expect = 5e-44
Identities = 167/193 (86%)
Strand = Plus / Minus
Query: 5561 cagtaaagctccatggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtac 5620
||||||||||||| ||||||||| ||||||| | |||||| | |||||||||| | |
Sbjct: 2101 cagtaaagctccacggggtcttttcgtcctgccacgggtaggccgcatcttcacggccag 2042
Query: 5621 taaaatttcaccgagtctctcgttgagacagtgcccaaatcgttacgcctttcgtgcggg 5680
| |||||||||| ||| |||| ||||||| || | ||||||||| |||||||| ||
Sbjct: 2041 ttcaatttcaccgggtccctcgccgagacagcgctccggtcgttacgcttttcgtgcagg 1982
Query: 5681 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 5740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 1922
Query: 5741 ttactggggcttc 5753
| || ||||||||
Sbjct: 1921 tcaccggggcttc 1909
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6903
Number of Sequences: 1398
Number of extensions: 6903
Number of successful extensions: 2652
Number of sequences better than 1.0e-40: 46
Number of HSP's better than 0.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1889
Number of HSP's gapped (non-prelim): 582
length of query: 8629
length of database: 1,019,713
effective HSP length: 16
effective length of query: 8613
effective length of database: 997,345
effective search space: 8590132485
effective search space used: 8590132485
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 84 (167.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig623
(17,590 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 504 e-142
B.stearoth Bacillus stearothermophilus. 2927 bp 474 e-133
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 172 2e-42
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 504 bits (254), Expect = e-142
Identities = 405/446 (90%), Gaps = 7/446 (1%)
Strand = Plus / Plus
Query: 17146 ggatcctgagtacggcggaacacgagaaattccgtcggaatccgggaggaccatctccca 17205
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 ggatcctgagtacggcggaacacgtgaaattccgtcggaatccgggaggaccatctccca 468
Query: 17206 aggctaaatactccctagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 17265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggctaaatactccctagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 528
Query: 17266 accccggaaggggagtgaaatagaacctgaaaccgtgtgcctacaacaagtcaaagcccg 17325
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 529 accccggaaggggagtgaaagagatcctgaaaccgtgtgcctacaagtagtcagagcccg 588
Query: 17326 ttaatgggtgatggccgtgccttttgtagaatgaaccggcgagttacgattgcatgcgag 17385
|||| |||||||| ||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct: 589 ttaa-cggtgatgg-cgtgccttttgtagaatgaaccggcgagttacgatcccgtgcaag 646
Query: 17386 gttaagttgaaagagacggagccgcagcgaaagcgagtctgaatagggcgtaatgagtat 17445
|||||| | |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 647 gttaagcag-aagatgcggagccgcagcgaaagcgagtctgaatagggcg-catgagtac 704
Query: 17446 gtagtcgtagacccgaaaccatgtgatctacccatgtccaggttgaaggtgcggtaaaac 17505
|| |||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||
Sbjct: 705 gtggtcgtagacccgaaaccaggtgatctacccatgtccagggtgaagttcaggtaacac 764
Query: 17506 gcactggaggaccgaaacccacgatacgtggaaaagtgcggggatgaggtgtgggtagcg 17565
| |||||| ||| |||||||| |||| |||||||||||||||||||||||||||| |
Sbjct: 765 tgaatggaggcccg-aacccacg-cacgttgaaaagtgcggggatgaggtgtgggtaggg 822
Query: 17566 gagaaattccaa-cgaacttggagat 17590
| ||||| |||| ||||| |||||||
Sbjct: 823 gtgaaatgccaatcgaacctggagat 848
Score = 170 bits (86), Expect = 6e-42
Identities = 111/118 (94%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 16757 aagggcgcacggtggatgccttggcactaggagccgatgaaggacgggactaacaccgat 16816
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13 aagggcgcacggtggatgccttggcactaggagccgatgaaggacgggacgaacaccgat 72
Query: 16817 atgctttggggagctgtacgtaagctatgatccagagatttccgaatgggggaaccca 16874
|||||| ||||||||||| | ||||| |||||| ||||||||||||||||| ||||||
Sbjct: 73 atgcttcggggagctgta-gcaagctttgatccggagatttccgaatggggaaaccca 129
>B.stearoth Bacillus stearothermophilus. 2927 bp
Length = 2927
Score = 474 bits (239), Expect = e-133
Identities = 400/446 (89%), Gaps = 7/446 (1%)
Strand = Plus / Plus
Query: 17146 ggatcctgagtacggcggaacacgagaaattccgtcggaatccgggaggaccatctccca 17205
|||||||||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 410 ggatcctgagtacggcgggacacgggaaatcccgtcggaagcagggaggaccatctccca 469
Query: 17206 aggctaaatactccctagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 17265
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 470 aggctaaatactccctagtgaccgatagtgcaccagtaccgtgagggaaaggtgaaaagc 529
Query: 17266 accccggaaggggagtgaaatagaacctgaaaccgtgtgcctacaacaagtcaaagcccg 17325
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 530 accccggaaggggagtgaaagagaacctgaaaccgtgtgcctacaagtagtcagagcgcg 589
Query: 17326 ttaatgggtgatggccgtgccttttgtagaatgaaccggcgagttacgattgcatgcgag 17385
|| ||| ||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 590 ttcatgcgtgatgg-cgtgccttttgtagaatgaaccggcgagtgacgatggcgtgcgag 648
Query: 17386 gttaagttgaaagagacggagccgcagcgaaagcgagtctgaatagggcgtaatgagtat 17445
|||||| | ||||| ||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 649 gttaagccg-aagaggcggagccgcagcgaaagcgagtctgaacagggcgaaa--agtac 705
Query: 17446 gtagtcgtagacccgaaaccatgtgatctacccatgtccaggttgaaggtgcggtaaaac 17505
|| ||||| |||||||||||| |||||||||||||||||||| |||||| ||||| ||
Sbjct: 706 gtcgtcgtcgacccgaaaccaggtgatctacccatgtccagggtgaaggccgggtaacac 765
Query: 17506 gcactggaggaccgaaacccacgatacgtggaaaagtgcggggatgaggtgtgggtagcg 17565
||||||| ||| |||||||| |||| |||||||||||||||||||||||||||| |
Sbjct: 766 cggctggaggcccg-aacccacg-cacgttgaaaagtgcggggatgaggtgtgggtaggg 823
Query: 17566 gagaaattccaa-cgaacttggagat 17590
| ||||| |||| |||||||||||||
Sbjct: 824 gtgaaatgccaatcgaacttggagat 849
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 172 bits (87), Expect = 2e-42
Identities = 135/151 (89%)
Strand = Plus / Plus
Query: 17161 cggaacacgagaaattccgtcggaatccgggaggaccatctcccaaggctaaatactccc 17220
|||| |||| |||||||||| ||||||| |||||||| ||| |||||||||||||||
Sbjct: 397 cggagcacgtgaaattccgtgtgaatccgcgaggaccacctcgtaaggctaaatactcct 456
Query: 17221 tagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagcaccccggaaggggag 17280
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 457 gtgtgaccgatagtgaaccagtaccgcgagggaaaggtgaaaagaaccccggaaggggag 516
Query: 17281 tgaaatagaacctgaaaccgtgtgcctacaa 17311
||||||||||| |||||||||| || |||||
Sbjct: 517 tgaaatagaacatgaaaccgtgagcttacaa 547
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8294
Number of Sequences: 1398
Number of extensions: 8294
Number of successful extensions: 1323
Number of sequences better than 1.0e-40: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 14
length of query: 17,590
length of database: 1,019,713
effective HSP length: 17
effective length of query: 17,573
effective length of database: 995,947
effective search space: 17501776631
effective search space used: 17501776631
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 84 (167.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig652
(97,459 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 1538 0.0
B.stearoth Bacillus stearothermophilus. 2927 bp 1392 0.0
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 599 e-170
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 583 e-165
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 567 e-160
Stm.ambofa Streptomyces ambofaciens. 3129 bp 541 e-153
Stm.griseu Streptomyces griseus. 3129 bp 533 e-150
Fra.sp. Frankia sp.. 3099 bp 525 e-148
T.thermoph Thermus thermophilus HB8. 2914 bp 498 e-139
Mic.luteus Micrococcus luteus. 3093 bp 462 e-129
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 1538 bits (776), Expect = 0.0
Identities = 1060/1152 (92%), Gaps = 2/1152 (0%)
Strand = Plus / Minus
Query: 22973 tggttaagtcctcgatcgattagtatcagtccgctccatacatcactgtacttccactcc 23032
||||||||||||||||||||||||||| ||| ||||||| | | |||||||| |
Sbjct: 2926 tggttaagtcctcgatcgattagtatctgtcagctccatgtgttgccacacttccacctc 2867
Query: 23033 tgacctatctacctgatcatctctcagggatcttactttcttaaagaaatgggaaatctc 23092
|||||||| |||||||||||| ||||||||||| ||| ||| ||| |||||||||||
Sbjct: 2866 agacctatcaacctgatcatctttcagggatcttgcttccttgcggaa-tgggaaatctc 2808
Query: 23093 atcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatagcta 23152
||||||||| |||||||| |||||||||||||||| ||||||| ||| |||||||||
Sbjct: 2807 atcttgaggggggcttcatgcttagatgctttcagcacttatcccgtccgcacatagcta 2748
Query: 23153 cccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatcccggtcctct 23212
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2747 cccagcgatgcccttggcagaacaactggtacaccagcggtgcgtccatcccggtcctct 2688
Query: 23213 cgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgt 23272
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2687 cgtactaaggacagctcctctcaaatttccagcgcccgcgacggatagggaccgaactgt 2628
Query: 23273 ctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttg 23332
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2627 ctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttg 2568
Query: 23333 ggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcg 23392
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2567 ggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaacctccccgtcg 2508
Query: 23393 atgtgga-ctcttgggggagataagcctgttatccccagggtagcttttatccgttgagc 23451
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2507 atgtggagctcttgggggagataagcctgttatccccggggtagcttttatccgttgagc 2448
Query: 23452 gatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcgact 23511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 gatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcgact 2388
Query: 23512 tgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgatttccaaccat 23571
||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 2387 tgtaggtctcgcagtcaagctcccttgtgcctttacactctgcgaatgatttccaaccat 2328
Query: 23572 tctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaaact 23631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 tctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaaact 2268
Query: 23632 gcccatctgacactgtctcccaccacgattagtggtgcgggttagagtggccataacgca 23691
||||| ||||||||||||||| | |||| || | | |||||||| | | ||| ||
Sbjct: 2267 gcccacctgacactgtctccccgcccgataagggcggggggttagaaggtcaatacagcc 2208
Query: 23692 ggggtagtatcccaccagcgcctccatcgaaactagcgttccgatttctacggctcctac 23751
||||||||||||||| ||||||| |||| || ||| |||| |||| | |||||||||
Sbjct: 2207 agggtagtatcccaccgatgcctccaccgaagctggcgctccggtttccaaggctcctac 2148
Query: 23752 ctatcctgtacatgcggtacagacactcaatatcaaactacagtaaagctccatggggtc 23811
|||||||||||| || |||| | ||||||||| || ||||||||||||| ||||||
Sbjct: 2147 ctatcctgtacaagctgtaccaaacttcaatatcaggctgcagtaaagctccacggggtc 2088
Query: 23812 tttccgtcctgtcgcgggtaacctgcatcttcacaggtactaaaatttcaccgagtctct 23871
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2087 tttccgtcctgtcgcgggtaacctgcatcttcacaggtactataatttcaccgagtctct 2028
Query: 23872 cgttgagacagtgcccaaatcgttacgcctttcgtgcgggtcggaacttacccgacaagg 23931
||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2027 cgttgagacagcgcccagatcgttgcgcctttcgtgcgggtcggaacttacccgacaagg 1968
Query: 23932 aatttcgctaccttaggaccgttatagttacggccgccgtttactggggcttcaattcgt 23991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 aatttcgctaccttaggaccgttatagttacggccgccgtttactggggcttcaattcgc 1908
Query: 23992 accttcgcttgcgctaagcactcctcttaaccttccagcaccgggcaggcgtcagcccct 24051
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 accttcgcttacgctaagcgctcctcttaaccttccagcaccgggcaggcgtcagcccct 1848
Query: 24052 atacttcatcttacgattttgcagagacctgtgtttttgataaacagtcgcttgggccta 24111
||||||| |||||| || ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1847 atacttcgccttacggcttcgcagagacctgtgtttttgctaaacagtcgcctgggccta 1788
Query: 24112 ttcactgcggct 24123
||||||||||||
Sbjct: 1787 ttcactgcggct 1776
Score = 979 bits (494), Expect = 0.0
Identities = 724/798 (90%), Gaps = 2/798 (0%)
Strand = Plus / Minus
Query: 24688 cagcttcggtaatatgtttagccccggtacattttcggcgcagggtcactcgactagtga 24747
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 1204 cagcttcggtgatacgtttagccccggtacattttcggcgcagagtcactcgaccagtga 1145
Query: 24748 gctattacgcactctttaaatggtggctgcttctaagccaacatcctagttgtctgtgca 24807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1144 gctattacgcactctttaaatggtggctgcttctaagccaacatcctggttgtctaagca 1085
Query: 24808 accccacatccttttccacttaacatatattttgggaccttagctggtggtctgggctgt 24867
|| ||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||
Sbjct: 1084 actccacatccttttccacttaacgtatactttgggacctcagctggcggtctgggctgt 1025
Query: 24868 ttccctttcgactatggatcttatcactcacagtctgactcccggatatgaatgaatggc 24927
|||||||||||||| |||||||||||||| ||||||||||||| || | | | ||||
Sbjct: 1024 ttccctttcgactacggatcttatcactcgcagtctgactcccaaggataagtcattggc 965
Query: 24928 attcggagtttatctgaattcggtaacccgagatgggcccctagtccaaacagtgctcta 24987
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 964 attcggagtttgactgaattcggtaacccggtgagggcccctagtccaatcagtgctcta 905
Query: 24988 cctccatcattctcaattccgaggctagccctaaagctatttcggagagaaccagctatc 25047
|||||| | ||| | | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 904 cctccaagactcttacctt-gaggctagccctagagctatttcggagagaaccagctatc 846
Query: 25048 tccaagttcgtttggaatttctccgctacccacacctcatccccgcacttttcaacgtac 25107
|||| ||||| |||| ||||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 845 tccaggttcgattggcatttcacccctacccacacctcatccccgcacttttcaacgtgc 786
Query: 25108 gtgggttcggtcctccagtgcgttttaccgcaccttcaacctggacatgggtagatcaca 25167
|||||||||| |||||| | || ||||| | ||||| ||||||||||||||||||||
Sbjct: 785 gtgggttcgggcctccattcagtgttacctgaacttcaccctggacatgggtagatcacc 726
Query: 25168 tggtttcgggtctacgactacatactcaaacgccctattcagactcgctttcgctgcggc 25227
|||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 725 tggtttcgggtctacgaccacgtactcatgcgccctattcagactcgctttcgctgcggc 666
Query: 25228 tccgtctcttcaacttaacctcgcatgcaatcgtaactcgccggttcattctacaaaagg 25287
|||| ||||| |||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 665 tccgcatcttctgcttaaccttgcacgggatcgtaactcgccggttcattctacaaaagg 606
Query: 25288 cacgccatcacccattaacgggctttgacttgttgtaggcacacggtttcaggttctatt 25347
|||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||| ||
Sbjct: 605 cacgccatcaccg-ttaacgggctctgactacttgtaggcacacggtttcaggatctctt 547
Query: 25348 tcactccccttccggggtgcttttcacctttccctcacggtactggttcactatcggtca 25407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcactccccttccggggtgcttttcacctttccctcacggtactggttcactatcggtca 487
Query: 25408 ctagggagtatttagccttgggagatggtcctcccggattccgacggaatttctcgtgtt 25467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 486 ctagggagtatttagccttgggagatggtcctcccggattccgacggaatttcacgtgtt 427
Query: 25468 ccgccgtactcaggatcc 25485
||||||||||||||||||
Sbjct: 426 ccgccgtactcaggatcc 409
Score = 254 bits (128), Expect = 3e-66
Identities = 199/220 (90%), Gaps = 2/220 (0%)
Strand = Plus / Minus
Query: 24447 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 24506
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 1442 ggtacaggaatatcaacctgttgtccatcgcctacgcctttcggcctcggcttaggtccc 1383
Query: 24507 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 24566
||||||||||| ||||||||||||||| |||||| |||||| ||||||||||| |||||
Sbjct: 1382 gactaaccctgagcggacgagccttcctcaggaacccttaggcattcggtgga-gggatt 1324
Query: 24567 ctcacctgtc-tttcgctactcataccggcattctcacttctaagcgctccagcagtcct 24625
|||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1323 ctcacccctcttttcgctactcataccggcattctcacttctaagccgtccaccagtcct 1264
Query: 24626 cacgatctgccttcgacgcccttagaacgctctcctacca 24665
|| |||| |||| |||||||||||||||||||||||
Sbjct: 1263 tccggtctggcttcacagcccttagaacgctctcctacca 1224
Score = 226 bits (114), Expect = 6e-58
Identities = 175/194 (90%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 24136 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctct 24195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1752 agcaccccttctcccgaagttacggggtcattttgccgagttctttaacgagagttctct 1693
Query: 24196 cgctcaccttaggattctctcctcgactacctgtgtcggtttgcggtacgggccgctgtt 24255
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct: 1692 cgatcaccttaggattctctcctcgcctacctgtgacggtttgcggtacgggcacctctc 1633
Query: 24256 ttctcactagaagcttttctcggcagtgtgacatcaggaacttcggtactattatttccc 24315
||| ||||| |||||||| ||||||||| |||||||||||| |||||| |||||| |
Sbjct: 1632 acctcgctagaggcttttcttggcagtgtggaatcaggaacttccgtacta-tatttcgc 1574
Query: 24316 tccccatcacagct 24329
|| |||||||||||
Sbjct: 1573 tcgccatcacagct 1560
Score = 170 bits (86), Expect = 3e-41
Identities = 111/118 (94%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 25757 tgggttcccccattcggaaatctctggatcatagcttacgtacagctccccaaagcatat 25816
|||||| ||||||||||||||||| |||||| ||||| | ||||||||||| ||||||||
Sbjct: 129 tgggtttccccattcggaaatctccggatcaaagcttgc-tacagctccccgaagcatat 71
Query: 25817 cggtgttagtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 25874
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cggtgttcgtcccgtccttcatcggctcctagtgccaaggcatccaccgtgcgccctt 13
>B.stearoth Bacillus stearothermophilus. 2927 bp
Length = 2927
Score = 1392 bits (702), Expect = 0.0
Identities = 957/1042 (91%)
Strand = Plus / Minus
Query: 23082 tgggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttcc 23141
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||
Sbjct: 2817 tgggaaatctcatcttgaggggggcttcacgcttagatgctttcagcgcttatcccgtcc 2758
Query: 23142 ctacatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccat 23201
||||||||||||||| ||||| |||| | |||||||||||||||||||| ||||||
Sbjct: 2757 gcacatagctacccagcggtgcccctggcgggacaactggtacaccagcggtgcgtccat 2698
Query: 23202 cccggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagg 23261
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2697 cccggtcctctcgtactaaggacagctcctctcaaatttcctgcgcccgcgacggatagg 2638
Query: 23262 gaccgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacag 23321
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2637 gaccgaactgtctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacag 2578
Query: 23322 cccaacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaa 23381
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2577 cccaacccttgggaccgactacagccccaggatgcgatgagccgacatcgaggtgccaaa 2518
Query: 23382 cctccccgtcgatgtggactcttgggggagataagcctgttatccccagggtagctttta 23441
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 2517 cctccccgtcgatgtggactcttgggggagatcagcctgttatccccggggtagctttta 2458
Query: 23442 tccgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcc 23501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 tccgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtcc 2398
Query: 23502 ctgctcgacttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgat 23561
||||||||| ||| ||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 2397 ctgctcgacctgtccgtctcgcagtcaagctcccttgtgcctttgcactctccgaatgat 2338
Query: 23562 ttccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccc 23621
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2337 ttccaaccattctgagggaacctttgggcgcctccgttaccttttgggaggcgaccgccc 2278
Query: 23622 cagtcaaactgcccatctgacactgtctcccaccacgattagtggtgcgggttagagtgg 23681
|||||||||||||| |||||||||||||||||| || | || ||||||||||||| |
Sbjct: 2277 cagtcaaactgcccgcctgacactgtctcccaccccgctaaggggtgcgggttagaattt 2218
Query: 23682 ccataacgcaggggtagtatcccaccagcgcctccatcgaaactagcgttccgatttcta 23741
| ||| ||| |||| |||||||||| |||||||| |||| || ||| |||| |||
Sbjct: 2217 caatatcgccagggtggtatcccaccgccgcctccaccgaagctggcgctccggcttccc 2158
Query: 23742 cggctcctacctatcctgtacatgcggtacagacactcaatatcaaactacagtaaagct 23801
|||||| |||||||||||||| ||| || | | || |||||| || ||||||||||
Sbjct: 2157 aggctcccacctatcctgtacaagcgacaccaaaattccatatcaggctgcagtaaagct 2098
Query: 23802 ccatggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtactaaaatttca 23861
||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 2097 ccacggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtagtataatttca 2038
Query: 23862 ccgagtctctcgttgagacagtgcccaaatcgttacgcctttcgtgcgggtcggaactta 23921
||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 2037 ccgggtctctcgttgagacagcgcccaagtcgttacacctttcgtgcgggtcggaactta 1978
Query: 23922 cccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgtttactggggc 23981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 cccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgtttactggggc 1918
Query: 23982 ttcaattcgtaccttcgcttgcgctaagcactcctcttaaccttccagcaccgggcaggc 24041
||| |||| |||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 1917 ttcggttcgcaccttcgcttccgctaagcgctccccttaaccttccagcaccgggcaggt 1858
Query: 24042 gtcagcccctatacttcatcttacgattttgcagagacctgtgtttttgataaacagtcg 24101
|||||||||||||| || ||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1857 gtcagcccctatacgtcgccttacgacttcgcagagacctgtgtttttgataaacagtcg 1798
Query: 24102 cttgggcctattcactgcggct 24123
||||||||| || ||||||||
Sbjct: 1797 cttgggccttttgtctgcggct 1776
Score = 910 bits (459), Expect = 0.0
Identities = 703/783 (89%), Gaps = 1/783 (0%)
Strand = Plus / Minus
Query: 24703 gtttagccccggtacattttcggcgcagggtcactcgactagtgagctattacgcactct 24762
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 1191 gtttagccccggtacattttcggcgcagagtcactcgaccagtgagctattacgcactct 1132
Query: 24763 ttaaatggtggctgcttctaagccaacatcctagttgtctgtgcaaccccacatcctttt 24822
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 1131 ttaaatggtggctgcttctaagccaacatcctggttgtctttgcaactccacatcctttt 1072
Query: 24823 ccacttaacatatattttgggaccttagctggtggtctgggctgtttccctttcgactat 24882
||||| ||| | | |||||| |||||||||| | |||||||||||||||| ||||| |
Sbjct: 1071 ccactgaacgtgcactttggggccttagctggcgatctgggctgtttccctctcgaccac 1012
Query: 24883 ggatcttatcactcacagtctgactcccggatatgaatgaatggcattcggagtttatct 24942
|||||||||||||| ||||||||||||||| || | | ||||||||||||||| ||
Sbjct: 1011 ggatcttatcactcgcagtctgactcccgggcataagtcgttggcattcggagtttgact 952
Query: 24943 gaattcggtaacccgagatgggcccctagtccaaacagtgctctacctccatcattctca 25002
| ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||
Sbjct: 951 gggttcggtaacccgatgagggcccctagcccaatcagtgctctacctccaacactctcc 892
Query: 25003 attccgaggctagccctaaagctatttcggagagaaccagctatctccaagttcgtttgg 25062
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 891 atcccgaggctagccctaaagctatttcggggagaaccagctatctccaagttcgattgg 832
Query: 25063 aatttctccgctacccacacctcatccccgcacttttcaacgtacgtgggttcggtcctc 25122
||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 831 catttcacccctacccacacctcatccccgcacttttcaacgtgcgtgggttcgggcctc 772
Query: 25123 cagtgcgttttaccgcaccttcaacctggacatgggtagatcacatggtttcgggtctac 25182
||| || ||||| |||||| |||||||||||||||||||| |||||||||||| ||
Sbjct: 771 cagccggtgttacccggccttcaccctggacatgggtagatcacctggtttcgggtcgac 712
Query: 25183 gactacatactcaaacgccctattcagactcgctttcgctgcggctccgtctcttcaact 25242
||| || |||| |||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct: 711 gacgacgtactttt-cgccctgttcagactcgctttcgctgcggctccgcctcttcggct 653
Query: 25243 taacctcgcatgcaatcgtaactcgccggttcattctacaaaaggcacgccatcacccat 25302
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 652 taacctcgcacgccatcgtcactcgccggttcattctacaaaaggcacgccatcacgcat 593
Query: 25303 taacgggctttgacttgttgtaggcacacggtttcaggttctatttcactccccttccgg 25362
|||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 592 gaacgcgctctgactacttgtaggcacacggtttcaggttctctttcactccccttccgg 533
Query: 25363 ggtgcttttcacctttccctcacggtactggttcactatcggtcactagggagtatttag 25422
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 532 ggtgcttttcacctttccctcacggtactggtgcactatcggtcactagggagtatttag 473
Query: 25423 ccttgggagatggtcctcccggattccgacggaatttctcgtgttccgccgtactcagga 25482
|||||||||||||||||||| | ||||||||| ||||| ||||| |||||||||||||||
Sbjct: 472 ccttgggagatggtcctccctgcttccgacgggatttcccgtgtcccgccgtactcagga 413
Query: 25483 tcc 25485
|||
Sbjct: 412 tcc 410
Score = 244 bits (123), Expect = 3e-63
Identities = 196/219 (89%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 24447 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 24506
||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct: 1445 ggtacaggaatctcaacctgttgtccatcacctacgcctttcggcctcggcttaggtccc 1386
Query: 24507 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 24566
||||||||||| |||||||| |||||| |||||| |||||| | ||||| | | ||||||
Sbjct: 1385 gactaaccctgagcggacgaaccttcctcaggaacccttaggctttcggcgcagaggatt 1326
Query: 24567 ctcacctgt-ctttcgctactcataccggcattctcacttctaagcgctccagcagtcct 24625
||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1325 ctcacctctgttttcgctactcataccggcattctcacttctaagcgctccaccagtcct 1266
Query: 24626 cacgatctgccttcgacgcccttagaacgctctcctacc 24664
|| |||| |||| ||||||||||||||||| ||||||
Sbjct: 1265 tccggtctggcttcaacgcccttagaacgctcccctacc 1227
Score = 206 bits (104), Expect = 6e-52
Identities = 149/164 (90%)
Strand = Plus / Minus
Query: 24136 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctct 24195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 agcaccccttctcccgaagttacggggtcattttgccgagttccttaacgagagttctcc 1693
Query: 24196 cgctcaccttaggattctctcctcgactacctgtgtcggtttgcggtacgggccgctgtt 24255
||| | ||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct: 1692 cgcgcgccttaggattctctcctcgcctacctgtgtcggtttgcggtacgggcacctctt 1633
Query: 24256 ttctcactagaagcttttctcggcagtgtgacatcaggaacttc 24299
||| ||||| |||||||| |||||||||| ||| || |||||
Sbjct: 1632 ccctcgctagaggcttttcttggcagtgtgaaatcggggacttc 1589
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 599 bits (302), Expect = e-170
Identities = 495/558 (88%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 23090 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 23149
|||||||||||||||||||| ||||||||||||||||||| |||||| ||| || |||
Sbjct: 2759 ctcatcttgaggtgggcttcccacttagatgctttcagcggttatccactccacacgtag 2700
Query: 23150 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 23208
||||||||| | || |||||| | |||||||||||||||||| || | ||||||||
Sbjct: 2699 ctacccagcgtttaccgttggcacgataactggtacaccagcggtgcgttcctcccggtc 2640
Query: 23209 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 23268
||||||||||| ||| | ||||||||| || ||||| || |||||| ||||||||
Sbjct: 2639 ctctcgtactagggagaaatcctctcaatactcttacgcctgcaccggatatggaccgaa 2580
Query: 23269 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 23328
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 2579 ctgtctcacgacgttctgaacccagctcacgtaccgctttaatgggcgaacagcccaacc 2520
Query: 23329 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 23388
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 2519 cttgggaccgacttcagccccaggttgcgatgagccgacatcgaggtgccaaacctcctc 2460
Query: 23389 gtcgatgtggactcttgggggagataagcctgttatccccagggtagcttttatccgttg 23448
||||||||| |||||||| |||||| ||||||||||||| || ||| |||||||||||||
Sbjct: 2459 gtcgatgtgaactcttggaggagatcagcctgttatccctagagtaacttttatccgttg 2400
Query: 23449 agcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcg 23508
||||| |||||||||| | ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 2399 agcgacggcccttccactcagaaccgtcggatcactaaggccgactttcgtccctgctcg 2340
Query: 23509 acttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgatttccaac 23568
|||||| ||||| |||||||||||||||| ||||||| ||||| ||| |||||||||||
Sbjct: 2339 acttgtaggtcttgcagtcaagctcccttatgcctttgcactcgtcggctgatttccaac 2280
Query: 23569 cattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaa 23628
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 cagcctgagggaacctttgcgcgcctccgttaccttttaggaggcgaccgccccagtcaa 2220
Query: 23629 actgcccatctgacactg 23646
|||||||| |||| ||||
Sbjct: 2219 actgcccacctgatactg 2202
Score = 202 bits (102), Expect = 9e-51
Identities = 180/206 (87%)
Strand = Plus / Minus
Query: 23779 caatatcaaactacagtaaagctccatggggtctttccgtcctgtcgcgggtaacctgca 23838
||||| ||| ||||||||||||| ||| ||||||||| |||| | || |||| | | |
Sbjct: 2071 caataccaagctacagtaaagcttcatagggtctttctgtccgggtgcaggtagtccgta 2012
Query: 23839 tcttcacaggtactaaaatttcaccgagtctctcgttgagacagtgcccaaatcgttacg 23898
||||||||| ||| ||||| ||||| ||||| |||||||| ||||| |||||||||
Sbjct: 2011 tcttcacagacactcctatttcgccgagcctctctctgagacagcgcccagatcgttacg 1952
Query: 23899 cctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgttatag 23958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 cctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgttatag 1892
Query: 23959 ttacggccgccgtttactggggcttc 23984
|||||||||||||| || ||||||||
Sbjct: 1891 ttacggccgccgttcaccggggcttc 1866
Score = 184 bits (93), Expect = 2e-45
Identities = 180/208 (86%), Gaps = 2/208 (0%)
Strand = Plus / Minus
Query: 25265 tcgccggttcattctacaaaaggcacgccatcacccattaa--cgggctttgacttgttg 25322
||||||| ||||||| ||| ||||||||| |||||| || | |||||| |||| |||
Sbjct: 604 tcgccggctcattcttcaacaggcacgccgtcacccgttgaatcgggctccgactgcttg 545
Query: 25323 taggcacacggtttcaggttctatttcactccccttccggggtgcttttcacctttccct 25382
|| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 taagctcacggtttcatgttctatttcactccccttccggggttcttttcacctttccct 485
Query: 25383 cacggtactggttcactatcggtcactagggagtatttagccttgggagatggtcctccc 25442
| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
Sbjct: 484 cgcggtactggttcactatcggtcacacaggagtatttagccttacgaggtggtcctcgc 425
Query: 25443 ggattccgacggaatttctcgtgttccg 25470
|||||| |||||||||| |||| ||||
Sbjct: 424 ggattcacacggaatttcacgtgctccg 397
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end, 5S
ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 583 bits (294), Expect = e-165
Identities = 484/546 (88%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 23090 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 23149
||||||||||||| |||||| ||||||||||||||||||| |||||| |||| ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatcctttccgtacttag 536
Query: 23150 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 23208
||||||||| | || |||||| || |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacaataactggtacaccagaggtgcgtctctcccggtc 476
Query: 23209 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 23268
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 23269 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 23328
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 23329 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 23388
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 23389 gtcgatgtggactcttgggggagataagcctgttatccccagggtagcttttatccgttg 23448
||||||||| ||||||||||||||| ||||||||||||| || ||| |||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagatcagcctgttatccctagagtaacttttatccgttg 236
Query: 23449 agcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcg 23508
||||| |||||||||| ||| ||| ||||||||||||| |||||||||||| ||| |||
Sbjct: 235 agcgacggcccttccactcggtaccgccggatcactaaggccgactttcgtctctgttcg 176
Query: 23509 acttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgatttccaac 23568
|||||| |||||| ||||||||||| ||| |||||||||||||| ||| |||||||| ||
Sbjct: 175 acttgtaggtctcacagtcaagctctcttatgcctttacactctacgactgatttccgac 116
Query: 23569 cattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaa 23628
|| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 115 cagcctgagagaacctttgcacgcctccgttactttttaggaggcgaccgccccagtcaa 56
Query: 23629 actgcc 23634
||||||
Sbjct: 55 actgcc 50
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal
RNA gene, complete cds. 713 bp
Length = 713
Score = 567 bits (286), Expect = e-160
Identities = 482/546 (88%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 23090 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 23149
||||||||||||| |||||| ||||||||||||||||||| |||||| | || ||| |||
Sbjct: 595 ctcatcttgaggttggcttcccacttagatgctttcagcggttatccttcccgtacttag 536
Query: 23150 ctacccagcaatgccc-ttggcagaacaactggtacaccagcggtaagtccatcccggtc 23208
||||||||| | || |||||| | |||||||||||||| ||| ||| ||||||||
Sbjct: 535 ctacccagcgtttaccgttggcacgataactggtacaccagaggtgcgtctctcccggtc 476
Query: 23209 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 23268
||||||||||||||| | ||||||||| || |||||| | |||||| ||||||||
Sbjct: 475 ctctcgtactaaggagaaatcctctcaatactctaacgcctacaccggatatggaccgaa 416
Query: 23269 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 23328
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 415 ctgtctcacgacgttctgaacccagctcgcgtaccgctttcatgggcgaacagcccaacc 356
Query: 23329 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 23388
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 cttgggacgtactaccgccccaggatgcgatgagccgacatcgaggtgccaaacctcccc 296
Query: 23389 gtcgatgtggactcttgggggagataagcctgttatccccagggtagcttttatccgttg 23448
||||||||| ||||||||||||||| ||||||||||||| || ||| |||||||||||||
Sbjct: 295 gtcgatgtgaactcttgggggagatcagcctgttatccctagagtaacttttatccgttg 236
Query: 23449 agcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcg 23508
||||| |||||||||| ||| ||| ||||||||||||| |||||||||||| ||| |||
Sbjct: 235 agcgacggcccttccactcggtaccgccggatcactaaggccgactttcgtctctgttcg 176
Query: 23509 acttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgatttccaac 23568
|||||| |||||| ||||||||||| ||| |||||||||||||| ||| |||||||| ||
Sbjct: 175 acttgtaggtctcacagtcaagctctcttatgcctttacactctacgactgatttccgac 116
Query: 23569 cattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaa 23628
|| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 115 cagcctgagagaacctttgcacgcctccgttactttttaggaggcgaccgccccagtcaa 56
Query: 23629 actgcc 23634
||||||
Sbjct: 55 actgcc 50
>Stm.ambofa Streptomyces ambofaciens. 3129 bp
Length = 3129
Score = 541 bits (273), Expect = e-153
Identities = 477/545 (87%)
Strand = Plus / Minus
Query: 23104 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 23163
|||||| | ||||||||||||||||| |||||||| || || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatccctcccgaacgtagccaaccagccatgc 2929
Query: 23164 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 23223
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 23224 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 23283
|||| | |||||| ||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaagactcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 23284 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 23343
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 23344 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 23403
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 23404 tgggggagataagcctgttatccccagggtagcttttatccgttgagcgatggcccttcc 23463
||||| |||| |||||||||||||| ||||| |||||||||||||||||| ||| |||||
Sbjct: 2688 tggggaagatcagcctgttatccccggggtaccttttatccgttgagcgacggcgcttcc 2629
Query: 23464 atgcggaaccaccggatcactaagcccgactttcgtccctgctcgacttgttggtctcgc 23523
| | ||| ||||||||||| ||||||||||||||||||||||| || |||||| |
Sbjct: 2628 acaagccaccgccggatcactagtcccgactttcgtccctgctcgacccgtcggtctcac 2569
Query: 23524 agtcaagctcccttctgcctttacactcttcgaatgatttccaaccattctgagggaacc 23583
|||||||||||||| ||| |||||||| | ||||| ||||||| |||||||||||
Sbjct: 2568 agtcaagctcccttgtgcacttacactcaacacctgattgccaaccaggctgagggaacc 2509
Query: 23584 tttgggcgcctccgttaccttttaggaggcgaccgccccagtcaaactgcccatctgaca 23643
|||||||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 2508 tttgggcgcctccgttactctttaggaggcaaccgccccagttaaactacccatcagaca 2449
Query: 23644 ctgtc 23648
|||||
Sbjct: 2448 ctgtc 2444
>Stm.griseu Streptomyces griseus. 3129 bp
Length = 3129
Score = 533 bits (269), Expect = e-150
Identities = 476/545 (87%)
Strand = Plus / Minus
Query: 23104 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 23163
|||||| | ||||||||||||||||| |||||| |||| || |||| | ||||| ||||
Sbjct: 2988 ggcttcccgcttagatgctttcagcggttatcctttccgaacgtagccaaccagccatgc 2929
Query: 23164 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 23223
||||||||| |||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2928 ccttggcaggacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2869
Query: 23224 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 23283
|||| | |||||| |||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 2868 cagcccttctcaatattcctacgcgcacagcggatagggaccgaactgtctcacgacgtt 2809
Query: 23284 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 23343
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2808 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggaccgactcc 2749
Query: 23344 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 23403
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2748 agccccaggatgcgacgagccgacatcgaggtgccaaaccatcccgtcgatatggactct 2689
Query: 23404 tgggggagataagcctgttatccccagggtagcttttatccgttgagcgatggcccttcc 23463
||||| |||| |||||||||||||| ||||| |||||||||||||||||| || |||||
Sbjct: 2688 tggggaagatcagcctgttatccccggggtaccttttatccgttgagcgacagcgcttcc 2629
Query: 23464 atgcggaaccaccggatcactaagcccgactttcgtccctgctcgacttgttggtctcgc 23523
| | || ||||||||||| ||||||||||||||||||||||| || |||||| |
Sbjct: 2628 acaagccactgccggatcactagtcccgactttcgtccctgctcgacccgtcggtctcac 2569
Query: 23524 agtcaagctcccttctgcctttacactcttcgaatgatttccaaccattctgagggaacc 23583
|||||||||||||| ||| |||||||| | ||||| ||||||| |||||||||||
Sbjct: 2568 agtcaagctcccttgtgcacttacactcaacacctgattgccaaccaggctgagggaacc 2509
Query: 23584 tttgggcgcctccgttaccttttaggaggcgaccgccccagtcaaactgcccatctgaca 23643
|||||||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 2508 tttgggcgcctccgttactctttaggaggcaaccgccccagttaaactacccatcagaca 2449
Query: 23644 ctgtc 23648
|||||
Sbjct: 2448 ctgtc 2444
>Fra.sp. Frankia sp.. 3099 bp
Length = 3099
Score = 525 bits (265), Expect = e-148
Identities = 475/545 (87%)
Strand = Plus / Minus
Query: 23104 ggcttcacacttagatgctttcagcgtttatcccttccctacatagctacccagcaatgc 23163
|||||| | ||||||||||||||||| ||||||||||| || |||| | ||||| ||||
Sbjct: 2967 ggcttcccgcttagatgctttcagcggttatcccttccgaacgtagccaaccagccatgc 2908
Query: 23164 ccttggcagaacaactggtacaccagcggtaagtccatcccggtcctctcgtactaagga 23223
|||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||
Sbjct: 2907 ccttggcagaacaactggcacaccagaggttcgtccgtcccggtcctctcgtactaggga 2848
Query: 23224 cagctcctctcaaatttccaacgcccgcgacggatagggaccgaactgtctcacgacgtt 23283
|||| | |||||| | ||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 2847 cagcccttctcaagtctcctgcgcgcgcggcggatagggaccgaactgtctcacgacgtt 2788
Query: 23284 ctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacccttgggaccgactac 23343
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2787 ctaaacccagctcgcgtaccgctttaatgggcgaacagcccaacccttgggacctactcc 2728
Query: 23344 agccccaggatgcgacgagccgacatcgaggtgccaaacctccccgtcgatgtggactct 23403
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 2727 agccccaggatgcgacgagccgacatcgaggtgccaaaccttgccgtcgatatggactct 2668
Query: 23404 tgggggagataagcctgttatccccagggtagcttttatccgttgagcgatggcccttcc 23463
|||| |||| |||||||||||||| ||||| |||||||||||||||||| ||| |||||
Sbjct: 2667 tgggcaagatcagcctgttatccccggggtaccttttatccgttgagcgacggcgcttcc 2608
Query: 23464 atgcggaaccaccggatcactaagcccgactttcgtccctgctcgacttgttggtctcgc 23523
| | ||| ||||||||||| ||| |||||| |||||||||| ||| ||||| |
Sbjct: 2607 acaagccaccgccggatcactagtccctgctttcgcacctgctcgacatgtctgtctcac 2548
Query: 23524 agtcaagctcccttctgcctttacactcttcgaatgatttccaaccattctgagggaacc 23583
|||||||||||||| ||| || ||||| | ||||| ||||||| |||||||||||
Sbjct: 2547 agtcaagctcccttgtgcacttgcactcaacacctgattgccaaccaggctgagggaacc 2488
Query: 23584 tttgggcgcctccgttaccttttaggaggcgaccgccccagtcaaactgcccatctgaca 23643
||||||||||||||||||| |||||||||| ||||||||||| ||||| |||| ||||||
Sbjct: 2487 tttgggcgcctccgttaccctttaggaggcaaccgccccagttaaactacccacctgaca 2428
Query: 23644 ctgtc 23648
|||||
Sbjct: 2427 ctgtc 2423
Score = 170 bits (86), Expect = 3e-41
Identities = 140/158 (88%)
Strand = Plus / Minus
Query: 24447 ggtacaggaatatcaacctgttatccatcgcctacgcctgtcggcctcggcttaggtccc 24506
||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 1514 ggtacgggaatatcaacccgttatccatcgactacgcctgtcggcctcgccttaggtccc 1455
Query: 24507 gactaaccctgggcggacgagccttccccaggaaaccttagtcattcggtggacaggatt 24566
|||| |||||||||||| ||||| ||||||||| |||| ||||| ||| |||| || ||
Sbjct: 1454 gactcaccctgggcggattagcctgccccaggaacccttggtcatccggcggacgggttt 1395
Query: 24567 ctcacctgtctttcgctactcataccggcattctcact 24604
|||||| ||| |||||||||||| || |||||||||||
Sbjct: 1394 ctcacccgtcattcgctactcatgcctgcattctcact 1357
>T.thermoph Thermus thermophilus HB8. 2914 bp
Length = 2914
Score = 498 bits (251), Expect = e-139
Identities = 474/547 (86%), Gaps = 1/547 (0%)
Strand = Plus / Minus
Query: 23090 ctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccctacatag 23149
||||||||| || ||||||| | ||||||||||||||||| ||||||||||| |||| |
Sbjct: 2794 ctcatcttggggcgggcttcccgcttagatgctttcagcggttatcccttccgcacatgg 2735
Query: 23150 ctacccagca-atgcccttggcagaacaactggtacaccagcggtaagtccatcccggtc 23208
||||||||| |||||| ||| | ||| |||| | ||||| ||| |||| | ||||||
Sbjct: 2734 ctacccagcttatgcccctggagggacagctgggaaaccagaggtgcgtcccttccggtc 2675
Query: 23209 ctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggatagggaccgaa 23268
||||||||||| | | ||| || ||||| ||| |||||| | ||||||| |||||||
Sbjct: 2674 ctctcgtactaggaagagcccccctcaagcctcctgcgcccgtggcggatagagaccgaa 2615
Query: 23269 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 23328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 ctgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcccaacc 2555
Query: 23329 cttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 23388
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 cttgggaccttcttcagccccaggatgcgacgagccgacatcgaggtgccaaacctcccc 2495
Query: 23389 gtcgatgtggactcttgggggagataagcctgttatccccagggtagcttttatccgttg 23448
| || ||||||| || ||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 2494 gccgctgtggacgctcgggggagatcagcctgttatccccggggtaacttttatccgttg 2435
Query: 23449 agcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccctgctcg 23508
| |||||||||||||| ||| |||||||| |||||| ||||| |||||| |||||||||
Sbjct: 2434 atcgatggcccttccacacgggaccaccggttcactaggcccggctttcgcccctgctcg 2375
Query: 23509 acttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgatttccaac 23568
|||| || |||||||||| || ||||||| || || | |||| || ||||||| |
Sbjct: 2374 gcttgcaggcctcgcagtcaggcccccttctacccttgcgctctccggcggatttccgtc 2315
Query: 23569 cattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaa 23628
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 ccgcctgaggggacctttgggcgcctccgttaccttttaggaggcgaccgccccagtcaa 2255
Query: 23629 actgccc 23635
|||||||
Sbjct: 2254 actgccc 2248
Score = 176 bits (89), Expect = 5e-43
Identities = 167/193 (86%)
Strand = Plus / Minus
Query: 23792 cagtaaagctccatggggtctttccgtcctgtcgcgggtaacctgcatcttcacaggtac 23851
||||||||||||| ||||||||| ||||||| | |||||| | |||||||||| | |
Sbjct: 2101 cagtaaagctccacggggtcttttcgtcctgccacgggtaggccgcatcttcacggccag 2042
Query: 23852 taaaatttcaccgagtctctcgttgagacagtgcccaaatcgttacgcctttcgtgcggg 23911
| |||||||||| ||| |||| ||||||| || | ||||||||| |||||||| ||
Sbjct: 2041 ttcaatttcaccgggtccctcgccgagacagcgctccggtcgttacgcttttcgtgcagg 1982
Query: 23912 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 23971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tcggaacttacccgacaaggaatttcgctaccttaggaccgttatagttacggccgccgt 1922
Query: 23972 ttactggggcttc 23984
| || ||||||||
Sbjct: 1921 tcaccggggcttc 1909
>Mic.luteus Micrococcus luteus. 3093 bp
Length = 3093
Score = 462 bits (233), Expect = e-129
Identities = 483/565 (85%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 23084 ggaaatctcatcttgaggtgggcttcacacttagatgctttcagcgtttatcccttccct 23143
||||||||||||| || | |||||| | ||||||||||||||||| |||||| | ||
Sbjct: 2973 ggaaatctcatctcgaagccggcttcccgcttagatgctttcagcggttatccatcccga 2914
Query: 23144 acatagctacccagcaatgcccttggcagaacaactggtacaccagcggtaagtccatcc 23203
|| |||||| |||| |||| | |||| | ||||||| | ||||| ||| |||| |||
Sbjct: 2913 acgtagctaatcagccatgcacctggcggtacaactgacataccagaggttcgtccgtcc 2854
Query: 23204 cggtcctctcgtactaaggacagctcctctcaaatttccaacgcccgcgacggataggga 23263
|||||||||||||||| |||||| | ||||||||||||||||| ||| |||||||||
Sbjct: 2853 cggtcctctcgtactagggacagaccttctcaaatttccaacgcgcgcagaggataggga 2794
Query: 23264 ccgaactgtctcacgacgttctgaacccagctcgcgtgccgctttaatgggcgaacagcc 23323
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2793 ccgaactgtctcacgacgttctgaacccagctcgcgtaccgctttaatgggcgaacagcc 2734
Query: 23324 caacccttgggaccgactacagccccaggatgcgacgagccgacatcgaggtgccaaacc 23383
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 caacccttgggacctactccagccccaggatgcgacgagccgacatcgaggtgccaaaca 2674
Query: 23384 tccccgtcgatgtggactcttgggggagataagcctgttatccccagggtagcttttatc 23443
| |||||||| |||||||||||| |||| |||||||||||||| |||| ||||||||
Sbjct: 2673 t-gccgtcgatatggactcttgggcaagatcagcctgttatccccgaggtaccttttatc 2615
Query: 23444 cgttgagcgatggcccttccatgcggaaccaccggatcactaagcccgactttcgtccct 23503
|||||||||| |||| ||||| || || ||||||||||| ||||||||||||||||
Sbjct: 2614 cgttgagcgacggccgttccacaacgagccgccggatcactagtcccgactttcgtccct 2555
Query: 23504 gctcgacttgttggtctcgcagtcaagctcccttctgcctttacactcttcgaatgattt 23563
|||||| || |||| ||||||||||||||| ||| || ||||| | |||||
Sbjct: 2554 gctcgagctgccactctcacagtcaagctcccttgtgcacttgcactcgacacctgatta 2495
Query: 23564 ccaaccattctgagggaacctttgggcgcctccgttaccttttaggaggcgaccgcccca 23623
||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 2494 ccaaccaggctgagggaacctttgggcgcctccgttacattttaggaggcaaccgcccca 2435
Query: 23624 gtcaaactgcccatctgacactgtc 23648
|| ||||| |||||| | |||||||
Sbjct: 2434 gttaaactacccatcaggcactgtc 2410
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,007
Number of Sequences: 1398
Number of extensions: 52007
Number of successful extensions: 5639
Number of sequences better than 1.0e-40: 50
Number of HSP's better than 0.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4718
Number of HSP's gapped (non-prelim): 781
length of query: 97,459
length of database: 1,019,713
effective HSP length: 18
effective length of query: 97,441
effective length of database: 994,549
effective search space: 96909849109
effective search space used: 96909849109
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 86 (171.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig654
(61,877 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
B.subtilis Bacillus subtilis 23S. 2927 bp 1532 0.0
B.stearoth Bacillus stearothermophilus. 2927 bp 1386 0.0
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 585 e-166
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 569 e-161
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 553 e-156
Stm.ambofa Streptomyces ambofaciens. 3129 bp 535 e-151
Stm.griseu Streptomyces griseus. 3129 bp 527 e-149
Fra.sp. Frankia sp.. 3099 bp 519 e-146
T.thermoph Thermus thermophilus HB8. 2914 bp 492 e-138
Flx.flexil Flexibacter flexilis. 2818 bp 460 e-128
>B.subtilis Bacillus subtilis 23S. 2927 bp
Length = 2927
Score = 1532 bits (773), Expect = 0.0
Identities = 1061/1153 (92%), Gaps = 3/1153 (0%)
Strand = Plus / Plus
Query: 50005 agccgcagtgaataggcccaagcgactgtttatcaaaaacacaggtctctgcaaaatcgt 50064
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||
Sbjct: 1776 agccgcagtgaataggcccaggcgactgtttagcaaaaacacaggtctctgcgaagccgt 1835
Query: 50065 aagatgaagtataggggctgacgcctgcccggtgctggaaggttaagaggagtgcttagc 50124
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1836 aaggcgaagtataggggctgacgcctgcccggtgctggaaggttaagaggagcgcttagc 1895
Query: 50125 gcaagcgaaggtacgaattgaagccccagtaaacggcggccgtaactataacggtcctaa 50184
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 gtaagcgaaggtgcgaattgaagccccagtaaacggcggccgtaactataacggtcctaa 1955
Query: 50185 ggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatttgggc 50244
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1956 ggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggcgcaacgatctgggc 2015
Query: 50245 actgtctcaacgagagactcggtgaaattttagtacctgtgaagatgcaggttacccgcg 50304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2016 gctgtctcaacgagagactcggtgaaattatagtacctgtgaagatgcaggttacccgcg 2075
Query: 50305 acaggacggaaagaccccatggagctttactgtagtttgatattgagtgtctgtaccgca 50364
|||||||||||||||||| ||||||||||||| || ||||||||| | |||| ||
Sbjct: 2076 acaggacggaaagaccccgtggagctttactgcagcctgatattgaagtttggtacagct 2135
Query: 50365 tgtacaggataggtaggagccgtagaaatcggaacgctagtttcgatggaggcgctggtg 50424
||||||||||||||||||||| | |||| |||| ||| || |||| ||||||| ||||
Sbjct: 2136 tgtacaggataggtaggagccttggaaaccggagcgccagcttcggtggaggcatcggtg 2195
Query: 50425 ggatactacccctgcgttatggccactctaacccgcaccactaatcgtggtgggagacag 50484
||||||||||| || ||| | | |||||||| | | || |||| | |||||||||
Sbjct: 2196 ggatactaccctggctgtattgaccttctaaccccccgcccttatcgggcggggagacag 2255
Query: 50485 tgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaa 50544
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 tgtcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaa 2315
Query: 50545 ggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttgact 50604
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 2316 ggttccctcagaatggttggaaatcattcgcagagtgtaaaggcacaagggagcttgact 2375
Query: 50605 gcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcat 50664
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 gcgagacctacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcat 2435
Query: 50665 ggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatctccccc 50724
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2436 ggaagggccatcgctcaacggataaaagctacccc-ggggataacaggcttatctccccc 2494
Query: 50725 aagag-tccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctgggg 50783
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2495 aagagctccacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcctgggg 2554
Query: 50784 ctgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttc 50843
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2555 ctgtagtcggtcccaagggttgggctgttcgcccattaaagcggtacgcgagctgggttc 2614
Query: 50844 agaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagaggagc 50903
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2615 agaacgtcgtgagacagttcggtccctatccgtcgcgggcgctggaaatttgagaggagc 2674
Query: 50904 tgtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctgccaa 50963
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2675 tgtccttagtacgagaggaccgggatggacgcaccgctggtgtaccagttgttctgccaa 2734
Query: 50964 gggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtgaag 51023
|||||| ||||||||||||||| ||| ||||||| |||||||||||||||| |||||
Sbjct: 2735 gggcatcgctgggtagctatgtgcggacgggataagtgctgaaagcatctaagcatgaag 2794
Query: 51024 cccacctcaagatgagatttcccatttctttaagaaagtaagatccctgagagatgatca 51083
||| |||||||||||||||||||| ||| ||| ||| ||||||||||| |||||||||
Sbjct: 2795 cccccctcaagatgagatttccca-ttccgcaaggaagcaagatccctgaaagatgatca 2853
Query: 51084 ggtagataggtcaggagtggaagtacagtgatgtatggagcggactgatactaatcgatc 51143
||| |||||||| | |||||||| | | ||||||| ||| ||||||||||||||
Sbjct: 2854 ggttgataggtctgaggtggaagtgtggcaacacatggagctgacagatactaatcgatc 2913
Query: 51144 gaggacttaacca 51156
|||||||||||||
Sbjct: 2914 gaggacttaacca 2926
Score = 920 bits (464), Expect = 0.0
Identities = 722/800 (90%), Gaps = 6/800 (0%)
Strand = Plus / Plus
Query: 48643 ggatcctgagtacggcggaacacgagaaattccgtcggaatccgggaggaccatctccca 48702
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 ggatcctgagtacggcggaacacgtgaaattccgtcggaatccgggaggaccatctccca 468
Query: 48703 aggctaaatactcc-tagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 48761
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggctaaatactccctagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 528
Query: 48762 acccccggaaggggagtgaaatagaacctgaaaccgtgtgc-tacaacaagtcaaagccc 48820
||||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||
Sbjct: 529 acccc-ggaaggggagtgaaagagatcctgaaaccgtgtgcctacaagtagtcagagccc 587
Query: 48821 gttaatgggtgatggcgtgccttttgtagaatgaaccggcgagttacgattgcatgcgag 48880
||||| || ||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct: 588 gttaacgg-tgatggcgtgccttttgtagaatgaaccggcgagttacgatcccgtgcaag 646
Query: 48881 gttaagttgaagagacggagccgcagcgaaagcgagtctgaatagggcgtttgagtatgt 48940
|||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 647 gttaagcagaagatgcggagccgcagcgaaagcgagtctgaatagggcgcatgagtacgt 706
Query: 48941 agtcgtagacccgaaaccatgtgatctacccatgtccaggttgaaggtgcggtaaaacgc 49000
|||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||
Sbjct: 707 ggtcgtagacccgaaaccaggtgatctacccatgtccagggtgaagttcaggtaacactg 766
Query: 49001 actggaggaccgaacccacgtacgttgaaaagtgcggggatgaggtgtgggtagcggaga 49060
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct: 767 aatggaggcccgaacccacgcacgttgaaaagtgcggggatgaggtgtgggtaggggtga 826
Query: 49061 aattccaaacgaacttggagatagctggttctctccgaaatagctttaggggctagcctc 49120
||| |||| ||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 827 aatgccaatcgaacctggagatagctggttctctccgaaatagctcta-gggctagcctc 885
Query: 49121 ggaattgagaatgatggaggtagagcactgtttggactaggggcccatctcgggttaccg 49180
| | ||| | |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 886 -aaggtaagagtcttggaggtagagcactgattggactaggggccctcaccgggttaccg 944
Query: 49181 aattcagataaactccgaatgccattcattcatatccgggagtcagactgtgagtgataa 49240
||||||| ||||||||||||||| | | | || ||||||||||||| |||||||||
Sbjct: 945 aattcagtcaaactccgaatgccaatgacttatccttgggagtcagactgcgagtgataa 1004
Query: 49241 gatccatagtcgaaagggaaacagcccagaccaccagctaaggtcccaaaatatatgtta 49300
||||| |||||||||||||||||||||||||| |||||| |||||||||| |||| ||||
Sbjct: 1005 gatccgtagtcgaaagggaaacagcccagaccgccagctgaggtcccaaagtatacgtta 1064
Query: 49301 agtggaaaaggatgtggggttgcacagacaactaggatgttggcttagaagcagccacca 49360
||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 1065 agtggaaaaggatgtggagttgcttagacaaccaggatgttggcttagaagcagccacca 1124
Query: 49361 tttaaagagtgcgtaatagctcactagtcgagtgaccctgcgccgaaaatgtaccggggc 49420
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 1125 tttaaagagtgcgtaatagctcactggtcgagtgactctgcgccgaaaatgtaccggggc 1184
Query: 49421 taaacatattaccgaagctg 49440
||||| ||| ||||||||||
Sbjct: 1185 taaacgtatcaccgaagctg 1204
Score = 262 bits (132), Expect = 7e-69
Identities = 200/220 (90%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 49463 tggtaggagagcgttctaagggcgttgaaggcagatcgtgaggactgctggagcgcttag 49522
||||||||||||||||||||||| ||||| |||| || ||||||| |||| ||||||
Sbjct: 1224 tggtaggagagcgttctaagggctgtgaagccagaccggaaggactggtggacggcttag 1283
Query: 49523 aagtgagaatgccggtatgagtagcgaaa-gacaggtgagaatcctgtccaccgaatgac 49581
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 1284 aagtgagaatgccggtatgagtagcgaaaagaggggtgagaatccc-tccaccgaatgcc 1342
Query: 49582 taaggtttcctggggaaggctcgtccgcccagggttagtcgggacctaagccgaggccga 49641
||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1343 taagggttcctgaggaaggctcgtccgctcagggttagtcgggacctaagccgaggccga 1402
Query: 49642 caggcgtaggcgatggataacaggttgatattcctgtacc 49681
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 1403 aaggcgtaggcgatggacaacaggttgatattcctgtacc 1442
Score = 226 bits (114), Expect = 4e-58
Identities = 175/194 (90%), Gaps = 1/194 (0%)
Strand = Plus / Plus
Query: 49799 agctgtgatggggagggaaataatagtaccgaagttcctgatgtcacactgccgagaaaa 49858
||||||||||| ||| |||||| |||||| |||||||||||| ||||||||| ||||||
Sbjct: 1560 agctgtgatggcgagcgaaata-tagtacggaagttcctgattccacactgccaagaaaa 1618
Query: 49859 gcttctagtgagaaaacagcggcccgtaccgcaaaccgacacaggtagtcgaggagagaa 49918
|| ||||| ||| | || ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1619 gcctctagcgaggtgagaggtgcccgtaccgcaaaccgtcacaggtaggcgaggagagaa 1678
Query: 49919 tcctaaggtgagcgagagaactctcgttaaggaactcggcaaaatgaccccgtaacttcg 49978
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1679 tcctaaggtgatcgagagaactctcgttaaagaactcggcaaaatgaccccgtaacttcg 1738
Query: 49979 ggagaaggggtgct 49992
||||||||||||||
Sbjct: 1739 ggagaaggggtgct 1752
Score = 170 bits (86), Expect = 2e-41
Identities = 111/118 (94%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 48254 aagggcgcacggtggatgccttggcactaggagccgatgaaggacgggactaacaccgat 48313
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13 aagggcgcacggtggatgccttggcactaggagccgatgaaggacgggacgaacaccgat 72
Query: 48314 atgctttggggagctgtacgtaagctatgatccagagatttccgaatgggggaaccca 48371
|||||| ||||||||||| | ||||| |||||| ||||||||||||||||| ||||||
Sbjct: 73 atgcttcggggagctgta-gcaagctttgatccggagatttccgaatggggaaaccca 129
>B.stearoth Bacillus stearothermophilus. 2927 bp
Length = 2927
Score = 1386 bits (699), Expect = 0.0
Identities = 958/1043 (91%), Gaps = 1/1043 (0%)
Strand = Plus / Plus
Query: 50005 agccgcagtgaataggcccaagcgactgtttatcaaaaacacaggtctctgcaaaatcgt 50064
|||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 1776 agccgcagacaaaaggcccaagcgactgtttatcaaaaacacaggtctctgcgaagtcgt 1835
Query: 50065 aagatgaagtataggggctgacgcctgcccggtgctggaaggttaagaggagtgcttagc 50124
||| || |||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct: 1836 aaggcgacgtataggggctgacacctgcccggtgctggaaggttaaggggagcgcttagc 1895
Query: 50125 gcaagcgaaggtacgaattgaagccccagtaaacggcggccgtaactataacggtcctaa 50184
| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 ggaagcgaaggtgcgaaccgaagccccagtaaacggcggccgtaactataacggtcctaa 1955
Query: 50185 ggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatttgggc 50244
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1956 ggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggtgtaacgacttgggc 2015
Query: 50245 actgtctcaacgagagactcggtgaaattttagtacctgtgaagatgcaggttacccgcg 50304
||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 2016 gctgtctcaacgagagacccggtgaaattatactacctgtgaagatgcaggttacccgcg 2075
Query: 50305 acaggacggaaagaccccatggagctttactgtagtttgatattgagtgtctgtaccgca 50364
|||||||||||||||||| ||||||||||||| || |||||| || | | || |||
Sbjct: 2076 acaggacggaaagaccccgtggagctttactgcagcctgatatggaattttggtgtcgct 2135
Query: 50365 tgtacaggataggtaggagccgtagaaatcggaacgctagtttcgatggaggcgctggtg 50424
|||||||||||||| |||||| ||| |||| ||| || |||| |||||||| ||||
Sbjct: 2136 tgtacaggataggtgggagcctgggaagccggagcgccagcttcggtggaggcggcggtg 2195
Query: 50425 ggatactacccctgcgttatggccactctaacccgcaccactaatcgtggtgggagacag 50484
|||||| |||| ||| ||| | | ||||||||||||| || | || ||||||||||||
Sbjct: 2196 ggataccaccctggcgatattgaaattctaacccgcaccccttagcggggtgggagacag 2255
Query: 50485 tgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaa 50544
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2256 tgtcaggcgggcagtttgactggggcggtcgcctcccaaaaggtaacggaggcgcccaaa 2315
Query: 50545 ggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttgact 50604
|||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct: 2316 ggttccctcagaatggttggaaatcattcggagagtgcaaaggcacaagggagcttgact 2375
Query: 50605 gcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcat 50664
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 gcgagacggacaggtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcat 2435
Query: 50665 ggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatctccccc 50724
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 2436 ggaagggccatcgctcaacggataaaagctacccc-ggggataacaggctgatctccccc 2494
Query: 50725 aagagtccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctggggc 50784
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2495 aagagtccacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcctggggc 2554
Query: 50785 tgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttca 50844
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2555 tgtagtcggtcccaagggttgggctgttcgcccattaaagcggtacgcgagctgggttca 2614
Query: 50845 gaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagaggagct 50904
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2615 gaacgtcgtgagacagttcggtccctatccgtcgcgggcgcaggaaatttgagaggagct 2674
Query: 50905 gtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctgccaag 50964
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |
Sbjct: 2675 gtccttagtacgagaggaccgggatggacgcaccgctggtgtaccagttgtcccgccagg 2734
Query: 50965 ggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtgaagc 51024
|||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 2735 ggcaccgctgggtagctatgtgcggacgggataagcgctgaaagcatctaagcgtgaagc 2794
Query: 51025 ccacctcaagatgagatttccca 51047
|| ||||||||||||||||||||
Sbjct: 2795 ccccctcaagatgagatttccca 2817
Score = 850 bits (429), Expect = 0.0
Identities = 701/785 (89%), Gaps = 5/785 (0%)
Strand = Plus / Plus
Query: 48643 ggatcctgagtacggcggaacacgagaaattccgtcggaatccgggaggaccatctccca 48702
|||||||||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 410 ggatcctgagtacggcgggacacgggaaatcccgtcggaagcagggaggaccatctccca 469
Query: 48703 aggctaaatactcc-tagtgaccgatagtgaaccagtaccgtgagggaaaggtgaaaagc 48761
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 470 aggctaaatactccctagtgaccgatagtgcaccagtaccgtgagggaaaggtgaaaagc 529
Query: 48762 acccccggaaggggagtgaaatagaacctgaaaccgtgtgc-tacaacaagtcaaagccc 48820
||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||| ||| |
Sbjct: 530 acccc-ggaaggggagtgaaagagaacctgaaaccgtgtgcctacaagtagtcagagcgc 588
Query: 48821 gttaatgggtgatggcgtgccttttgtagaatgaaccggcgagttacgattgcatgcgag 48880
||| ||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 589 gttcatgcgtgatggcgtgccttttgtagaatgaaccggcgagtgacgatggcgtgcgag 648
Query: 48881 gttaagttgaagagacggagccgcagcgaaagcgagtctgaatagggcgtttgagtatgt 48940
|||||| |||||| ||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 649 gttaagccgaagaggcggagccgcagcgaaagcgagtctgaacagggcg-aaaagtacgt 707
Query: 48941 agtcgtagacccgaaaccatgtgatctacccatgtccaggttgaaggtgcggtaaaacgc 49000
||||| |||||||||||| |||||||||||||||||||| |||||| ||||| ||
Sbjct: 708 cgtcgtcgacccgaaaccaggtgatctacccatgtccagggtgaaggccgggtaacaccg 767
Query: 49001 actggaggaccgaacccacgtacgttgaaaagtgcggggatgaggtgtgggtagcggaga 49060
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct: 768 gctggaggcccgaacccacgcacgttgaaaagtgcggggatgaggtgtgggtaggggtga 827
Query: 49061 aattccaaacgaacttggagatagctggttctctccgaaatagctttaggggctagcctc 49120
||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 828 aatgccaatcgaacttggagatagctggttctccccgaaatagcttta-gggctagcctc 886
Query: 49121 ggaattgagaatgatggaggtagagcactgtttggactaggggcccatctcgggttaccg 49180
|| || |||| || |||||||||||||||| |||| |||||||||| |||||||||||
Sbjct: 887 gggatggagagtgttggaggtagagcactgattgggctaggggccctcatcgggttaccg 946
Query: 49181 aattcagataaactccgaatgccattcattcatatccgggagtcagactgtgagtgataa 49240
|| ||| ||||||||||||||| | | || ||||||||||||||| |||||||||
Sbjct: 947 aacccagtcaaactccgaatgccaacgacttatgcccgggagtcagactgcgagtgataa 1006
Query: 49241 gatccatagtcgaaagggaaacagcccagaccaccagctaaggtcccaaaatatatgtta 49300
||||| | ||||| |||||||||||||||| | |||||||||| |||||| | | |||
Sbjct: 1007 gatccgtggtcgagagggaaacagcccagatcgccagctaaggccccaaagtgcacgttc 1066
Query: 49301 agtggaaaaggatgtggggttgcacagacaactaggatgttggcttagaagcagccacca 49360
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 1067 agtggaaaaggatgtggagttgcaaagacaaccaggatgttggcttagaagcagccacca 1126
Query: 49361 tttaaagagtgcgtaatagctcactagtcgagtgaccctgcgccgaaaatgtaccggggc 49420
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 1127 tttaaagagtgcgtaatagctcactggtcgagtgactctgcgccgaaaatgtaccggggc 1186
Query: 49421 taaac 49425
|||||
Sbjct: 1187 taaac 1191
Score = 252 bits (127), Expect = 7e-66
Identities = 197/219 (89%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 49464 ggtaggagagcgttctaagggcgttgaaggcagatcgtgaggactgctggagcgcttaga 49523
|||||| |||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 1227 ggtaggggagcgttctaagggcgttgaagccagaccggaaggactggtggagcgcttaga 1286
Query: 49524 agtgagaatgccggtatgagtagcgaaag-acaggtgagaatcctgtccaccgaatgact 49582
|||||||||||||||||||||||||||| | ||||||||||||| | | ||||| | ||
Sbjct: 1287 agtgagaatgccggtatgagtagcgaaaacagaggtgagaatcctctgcgccgaaagcct 1346
Query: 49583 aaggtttcctggggaaggctcgtccgcccagggttagtcgggacctaagccgaggccgac 49642
|||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 1347 aagggttcctgaggaaggttcgtccgctcagggttagtcgggacctaagccgaggccgaa 1406
Query: 49643 aggcgtaggcgatggataacaggttgatattcctgtacc 49681
||||||||| |||||| |||||||||| |||||||||||
Sbjct: 1407 aggcgtaggtgatggacaacaggttgagattcctgtacc 1445
Score = 206 bits (104), Expect = 4e-52
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 49829 gaagttcctgatgtcacactgccgagaaaagcttctagtgagaaaacagcggcccgtacc 49888
||||| || ||| |||||||||| |||||||| ||||| ||| || || |||||||||
Sbjct: 1589 gaagtccccgatttcacactgccaagaaaagcctctagcgagggaagaggtgcccgtacc 1648
Query: 49889 gcaaaccgacacaggtagtcgaggagagaatcctaaggtgagcgagagaactctcgttaa 49948
|||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 1649 gcaaaccgacacaggtaggcgaggagagaatcctaaggcgcgcgggagaactctcgttaa 1708
Query: 49949 ggaactcggcaaaatgaccccgtaacttcgggagaaggggtgct 49992
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ggaactcggcaaaatgaccccgtaacttcgggagaaggggtgct 1752
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 585 bits (295), Expect = e-166
Identities = 495/559 (88%), Gaps = 2/559 (0%)
Strand = Plus / Plus
Query: 50482 cagtgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgccc 50541
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2202 cagtatcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcgc 2261
Query: 50542 aaaggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttg 50601
|||||||||||||| ||||||||||||| ||| ||||| ||||||| |||||||||||
Sbjct: 2262 aaaggttccctcaggctggttggaaatcagccgacgagtgcaaaggcataagggagcttg 2321
Query: 50602 actgcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccg 50661
||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 2322 actgcaagacctacaagtcgagcagggacgaaagtcggccttagtgatccgacggttctg 2381
Query: 50662 catggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatctcc 50721
|||||||||| |||||||||||||||||| || | || ||||||||||||| ||||||
Sbjct: 2382 agtggaagggccgtcgctcaacggataaaagtta-ctctagggataacaggctgatctcc 2440
Query: 50722 cccaagagtccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctgg 50781
|||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2441 tccaagagttcacatcgacgaggaggtttggcacctcgatgtcggctcatcgcaacctgg 2500
Query: 50782 ggctgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggt 50841
||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 2501 ggctgaagtcggtcccaagggttgggctgttcgcccattaaagcggtacgtgagctgggt 2560
Query: 50842 tcagaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagagga 50901
||||||||||||||||||||||||||| |||||| || ||||| || |||||||||
Sbjct: 2561 tcagaacgtcgtgagacagttcggtccatatccggtgcaggcgtaagagtattgagagga 2620
Query: 50902 gctgtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctgcc 50961
| ||| ||||||||||||||||||| | || |||||||||||||||||| | ||||
Sbjct: 2621 tttctccctagtacgagaggaccgggaggaacgcaccgctggtgtaccagttatcgtgcc 2680
Query: 50962 aa-gggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtg 51020
|| || | |||||||||||| || ||| |||||| ||||||||||||||||||| |
Sbjct: 2681 aacggtaaacgctgggtagctacgtgtggagtggataaccgctgaaagcatctaagtggg 2740
Query: 51021 aagcccacctcaagatgag 51039
|||||||||||||||||||
Sbjct: 2741 aagcccacctcaagatgag 2759
Score = 202 bits (102), Expect = 6e-51
Identities = 180/206 (87%)
Strand = Plus / Plus
Query: 50144 gaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtc 50203
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1866 gaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtc 1925
Query: 50204 gggtaagttccgacccgcacgaaaggcgtaacgatttgggcactgtctcaacgagagact 50263
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1926 gggtaagttccgacccgcacgaaaggcgtaacgatctgggcgctgtctcagagagaggct 1985
Query: 50264 cggtgaaattttagtacctgtgaagatgcaggttacccgcgacaggacggaaagacccca 50323
||| ||||| ||| |||||||||| | | |||| || | |||| ||||||||| |
Sbjct: 1986 cggcgaaataggagtgtctgtgaagatacggactacctgcacccggacagaaagacccta 2045
Query: 50324 tggagctttactgtagtttgatattg 50349
|| ||||||||||||| ||| |||||
Sbjct: 2046 tgaagctttactgtagcttggtattg 2071
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end, 5S
ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 569 bits (287), Expect = e-161
Identities = 484/547 (88%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 50494 ggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggttccctc 50553
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct: 50 ggcagtttgactggggcggtcgcctcctaaaaagtaacggaggcgtgcaaaggttctctc 109
Query: 50554 agaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttgactgcgagacca 50613
|| |||| |||||||| ||| |||||||||||||| ||| ||||||||||| ||||||
Sbjct: 110 aggctggtcggaaatcagtcgtagagtgtaaaggcataagagagcttgactgtgagacct 169
Query: 50614 acaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcatggaagggcc 50673
||||||||| ||| |||||||||||| ||||||||||||| ||| ||| ||||||||||
Sbjct: 170 acaagtcgaacagagacgaaagtcggccttagtgatccggcggtaccgagtggaagggcc 229
Query: 50674 atcgctcaacggataaaagctacccctggggataacaggcttatctcccccaagagtcca 50733
|||||||||||||||||| ||| | | ||||||||||||| ||||||||||||||| ||
Sbjct: 230 gtcgctcaacggataaaagttactc-tagggataacaggctgatctcccccaagagttca 288
Query: 50734 catcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctggggctgtagtcgg 50793
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct: 289 catcgacggggaggtttggcacctcgatgtcggctcatcgcatcctggggcggtagtacg 348
Query: 50794 tcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttcagaacgtcgt 50853
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 349 tcccaagggttgggctgttcgcccatgaaagcggtacgcgagctgggttcagaacgtcgt 408
Query: 50854 gagacagttcggtccctatccgtcgcgggcgttggaaatttgagaggagctgtccttagt 50913
||||||||||||||| |||||| | |||||| || ||||||||| | ||||||||
Sbjct: 409 gagacagttcggtccatatccggtgtaggcgttagagtattgagaggatttctccttagt 468
Query: 50914 acgagaggaccgggatggacttaccgctggtgtaccagttgttctgccaa-gggcattgc 50972
||||||||||||||| ||| ||| |||||||||||||| || |||||| || | ||
Sbjct: 469 acgagaggaccgggagagacgcacctctggtgtaccagttattgtgccaacggtaaacgc 528
Query: 50973 tgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtgaagcccacctca 51032
|||||||||| ||| |||| |||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 529 tgggtagctaagtacggaaaggataaccgctgaaagcatctaagtgggaagccaacctca 588
Query: 51033 agatgag 51039
|||||||
Sbjct: 589 agatgag 595
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal
RNA gene, complete cds. 713 bp
Length = 713
Score = 553 bits (279), Expect = e-156
Identities = 482/547 (88%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 50494 ggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggttccctc 50553
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct: 50 ggcagtttgactggggcggtcgcctcctaaaaagtaacggaggcgtgcaaaggttctctc 109
Query: 50554 agaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttgactgcgagacca 50613
|| |||| |||||||| ||| |||||||||||||| ||| ||||||||||| ||||||
Sbjct: 110 aggctggtcggaaatcagtcgtagagtgtaaaggcataagagagcttgactgtgagacct 169
Query: 50614 acaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcatggaagggcc 50673
||||||||| ||| |||||||||||| ||||||||||||| ||| ||| ||||||||||
Sbjct: 170 acaagtcgaacagagacgaaagtcggccttagtgatccggcggtaccgagtggaagggcc 229
Query: 50674 atcgctcaacggataaaagctacccctggggataacaggcttatctcccccaagagtcca 50733
|||||||||||||||||| ||| | | ||||||||||||| ||||||||||||||| ||
Sbjct: 230 gtcgctcaacggataaaagttactc-tagggataacaggctgatctcccccaagagttca 288
Query: 50734 catcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctggggctgtagtcgg 50793
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct: 289 catcgacggggaggtttggcacctcgatgtcggctcatcgcatcctggggcggtagtacg 348
Query: 50794 tcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttcagaacgtcgt 50853
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 349 tcccaagggttgggctgttcgcccatgaaagcggtacgcgagctgggttcagaacgtcgt 408
Query: 50854 gagacagttcggtccctatccgtcgcgggcgttggaaatttgagaggagctgtccttagt 50913
||||||||||||||| |||||| | |||||| || ||||||||| | ||||||||
Sbjct: 409 gagacagttcggtccatatccggtgtaggcgttagagtattgagaggatttctccttagt 468
Query: 50914 acgagaggaccgggatggacttaccgctggtgtaccagttgttctgccaa-gggcattgc 50972
||||||||||||||| ||| ||| |||||||||||||| | |||||| || | ||
Sbjct: 469 acgagaggaccgggagagacgcacctctggtgtaccagttatcgtgccaacggtaaacgc 528
Query: 50973 tgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtgaagcccacctca 51032
|||||||||| ||| || | |||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 529 tgggtagctaagtacgggaaggataaccgctgaaagcatctaagtgggaagccaacctca 588
Query: 51033 agatgag 51039
|||||||
Sbjct: 589 agatgag 595
>Stm.ambofa Streptomyces ambofaciens. 3129 bp
Length = 3129
Score = 535 bits (270), Expect = e-151
Identities = 478/546 (87%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 50480 gacagtgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgc 50539
||||||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 2444 gacagtgtctgatgggtagtttaactggggcggttgcctcctaaagagtaacggaggcgc 2503
Query: 50540 ccaaaggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagct 50599
|||||||||||||||| ||||||| ||||| | |||||||| ||| |||||||||
Sbjct: 2504 ccaaaggttccctcagcctggttggcaatcaggtgttgagtgtaagtgcacaagggagct 2563
Query: 50600 tgactgcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttc 50659
|||||| |||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 2564 tgactgtgagaccgacgggtcgagcagggacgaaagtcgggactagtgatccggcggtgg 2623
Query: 50660 cgcatggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatct 50719
| |||||| ||| |||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 2624 cttgtggaagcgccgtcgctcaacggataaaaggtacccc-ggggataacaggctgatct 2682
Query: 50720 cccccaagagtccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcct 50779
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2683 tccccaagagtccatatcgacgggatggtttggcacctcgatgtcggctcgtcgcatcct 2742
Query: 50780 ggggctgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgg 50839
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2743 ggggctggagtcggtcccaagggttgggctgttcgcccattaaagcggtacgcgagctgg 2802
Query: 50840 gttcagaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagag 50899
||| |||||||||||||||||||||||||||||||| | | |||| ||| ||||||
Sbjct: 2803 gtttagaacgtcgtgagacagttcggtccctatccgctgtgcgcgtaggagtcttgagaa 2862
Query: 50900 gagctgtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctg 50959
| ||||||| ||||||||||||||||||| |||| ||| ||||||| |||||||| |||
Sbjct: 2863 gggctgtccctagtacgagaggaccgggacggacgaacctctggtgtgccagttgtcctg 2922
Query: 50960 ccaagggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgt 51019
|||||||||| ||||| | |||| || || |||||||| ||||||||||||||||| |
Sbjct: 2923 ccaagggcatggctggttggctacgttcgggagggataaccgctgaaagcatctaagcgg 2982
Query: 51020 gaagcc 51025
||||||
Sbjct: 2983 gaagcc 2988
>Stm.griseu Streptomyces griseus. 3129 bp
Length = 3129
Score = 527 bits (266), Expect = e-149
Identities = 477/546 (87%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 50480 gacagtgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgc 50539
||||||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 2444 gacagtgtctgatgggtagtttaactggggcggttgcctcctaaagagtaacggaggcgc 2503
Query: 50540 ccaaaggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagct 50599
|||||||||||||||| ||||||| ||||| | |||||||| ||| |||||||||
Sbjct: 2504 ccaaaggttccctcagcctggttggcaatcaggtgttgagtgtaagtgcacaagggagct 2563
Query: 50600 tgactgcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttc 50659
|||||| |||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2564 tgactgtgagaccgacgggtcgagcagggacgaaagtcgggactagtgatccggcagtgg 2623
Query: 50660 cgcatggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatct 50719
| |||||| || |||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 2624 cttgtggaagcgctgtcgctcaacggataaaaggtacccc-ggggataacaggctgatct 2682
Query: 50720 cccccaagagtccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcct 50779
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2683 tccccaagagtccatatcgacgggatggtttggcacctcgatgtcggctcgtcgcatcct 2742
Query: 50780 ggggctgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgg 50839
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2743 ggggctggagtcggtcccaagggttgggctgttcgcccattaaagcggtacgcgagctgg 2802
Query: 50840 gttcagaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagag 50899
||| |||||||||||||||||||||||||||||||| | | |||| |||| ||||||
Sbjct: 2803 gtttagaacgtcgtgagacagttcggtccctatccgctgtgcgcgtaggaatattgagaa 2862
Query: 50900 gagctgtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctg 50959
| ||||||| ||||||||||||||||||| |||| ||| ||||||| |||||||| |||
Sbjct: 2863 gggctgtccctagtacgagaggaccgggacggacgaacctctggtgtgccagttgtcctg 2922
Query: 50960 ccaagggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgt 51019
|||||||||| ||||| | |||| || |||| |||||| ||||||||||||||||| |
Sbjct: 2923 ccaagggcatggctggttggctacgttcggaaaggataaccgctgaaagcatctaagcgg 2982
Query: 51020 gaagcc 51025
||||||
Sbjct: 2983 gaagcc 2988
>Fra.sp. Frankia sp.. 3099 bp
Length = 3099
Score = 519 bits (262), Expect = e-146
Identities = 476/546 (87%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 50480 gacagtgtcagatgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgc 50539
||||||||||| |||| ||||| ||||||||||| |||||||||| ||||||||||||||
Sbjct: 2423 gacagtgtcaggtgggtagtttaactggggcggttgcctcctaaagggtaacggaggcgc 2482
Query: 50540 ccaaaggttccctcagaatggttggaaatcattcgaagagtgtaaaggcagaagggagct 50599
|||||||||||||||| ||||||| ||||| | ||||| || ||| |||||||||
Sbjct: 2483 ccaaaggttccctcagcctggttggcaatcaggtgttgagtgcaagtgcacaagggagct 2542
Query: 50600 tgactgcgagaccaacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttc 50659
|||||| ||||| ||| |||||||||| |||||| ||| ||||||||||| |||
Sbjct: 2543 tgactgtgagacagacatgtcgagcaggtgcgaaagcagggactagtgatccggcggtgg 2602
Query: 50660 cgcatggaagggccatcgctcaacggataaaagctacccctggggataacaggcttatct 50719
| |||||| ||| |||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 2603 cttgtggaagcgccgtcgctcaacggataaaaggtacccc-ggggataacaggctgatct 2661
Query: 50720 cccccaagagtccacatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcct 50779
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2662 tgcccaagagtccatatcgacggcaaggtttggcacctcgatgtcggctcgtcgcatcct 2721
Query: 50780 ggggctgtagtcggtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgg 50839
||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2722 ggggctggagtaggtcccaagggttgggctgttcgcccattaaagcggtacgcgagctgg 2781
Query: 50840 gttcagaacgtcgtgagacagttcggtccctatccgtcgcgggcgttggaaatttgagag 50899
||| |||||||||||||||||||||||||||||||| |||| ||| ||| | ||||||
Sbjct: 2782 gtttagaacgtcgtgagacagttcggtccctatccgccgcgcgcgcaggagacttgagaa 2841
Query: 50900 gagctgtccttagtacgagaggaccgggatggacttaccgctggtgtaccagttgttctg 50959
| ||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||||
Sbjct: 2842 gggctgtccctagtacgagaggaccgggacggacgaacctctggtgtgccagttgttctg 2901
Query: 50960 ccaagggcattgctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgt 51019
|||||||||| ||||| | |||| || ||||||||||| ||||||||||||||||| |
Sbjct: 2902 ccaagggcatggctggttggctacgttcggaagggataaccgctgaaagcatctaagcgg 2961
Query: 51020 gaagcc 51025
||||||
Sbjct: 2962 gaagcc 2967
Score = 170 bits (86), Expect = 2e-41
Identities = 140/158 (88%)
Strand = Plus / Plus
Query: 49524 agtgagaatgccggtatgagtagcgaaagacaggtgagaatcctgtccaccgaatgacta 49583
||||||||||| || |||||||||||| ||| |||||||| || |||| ||| ||||| |
Sbjct: 1357 agtgagaatgcaggcatgagtagcgaatgacgggtgagaaacccgtccgccggatgacca 1416
Query: 49584 aggtttcctggggaaggctcgtccgcccagggttagtcgggacctaagccgaggccgaca 49643
||| ||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct: 1417 agggttcctggggcaggctaatccgcccagggtgagtcgggacctaaggcgaggccgaca 1476
Query: 49644 ggcgtaggcgatggataacaggttgatattcctgtacc 49681
||||||| ||||||||||| |||||||||||| |||||
Sbjct: 1477 ggcgtagtcgatggataacgggttgatattcccgtacc 1514
Score = 168 bits (85), Expect = 8e-41
Identities = 176/205 (85%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 50145 aagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtcg 50204
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 2089 aagcgccagtaaacggcggtggtaactataaccatcctaaggtagcgaaattccttgtcg 2148
Query: 50205 ggtaagttccgacccgcacgaaaggcgtaacgatttgggcactgtctcaacgagagactc 50264
|||||||||||||| ||||||| |||||||||| || |||||||||||| | ||||||
Sbjct: 2149 ggtaagttccgacctgcacgaatggcgtaacgactttcccactgtctcaaccacagactc 2208
Query: 50265 ggtgaaattttagtacctgtgaagatgcaggttacccgcgacaggacggaaagaccccat 50324
|| |||||| | ||| || ||||||| ||||| |||| |||||||||||||||||
Sbjct: 2209 ggcgaaattgcattacgagtaaagatgctcgttacgcgcggcaggacggaaagacccc-g 2267
Query: 50325 ggagctttactgtagtttgatattg 50349
||| ||||||| ||| |||||||||
Sbjct: 2268 ggacctttactatagcttgatattg 2292
>T.thermoph Thermus thermophilus HB8. 2914 bp
Length = 2914
Score = 492 bits (248), Expect = e-138
Identities = 475/548 (86%), Gaps = 2/548 (0%)
Strand = Plus / Plus
Query: 50493 gggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggttccct 50552
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2248 gggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggtcccct 2307
Query: 50553 cagaatggttggaaatcattcgaagagtgtaaaggcagaagggagcttgactgcgagacc 50612
||| || ||||||| || |||| | || || ||||||| || |||||||||| ||
Sbjct: 2308 caggcgggacggaaatccgccggagagcgcaagggtagaagggggcctgactgcgaggcc 2367
Query: 50613 aacaagtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcatggaagggc 50672
|||| ||||||||| |||||| ||||| |||||| |||||||| ||| |||||||||
Sbjct: 2368 tgcaagccgagcaggggcgaaagccgggcctagtgaaccggtggtcccgtgtggaagggc 2427
Query: 50673 catcgctcaacggataaaagctacccctggggataacaggcttatctcccccaagagtcc 50732
||||| |||||||||||||| |||||| |||||||||||||| ||||||||| || ||||
Sbjct: 2428 catcgatcaacggataaaagttacccc-ggggataacaggctgatctcccccgagcgtcc 2486
Query: 50733 acatcgacggggaggtttggcacctcgatgtcggctcgtcgcatcctggggctgtagtcg 50792
||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2487 acagcggcggggaggtttggcacctcgatgtcggctcgtcgcatcctggggctgaagaag 2546
Query: 50793 gtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttcagaacgtcg 50852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 gtcccaagggttgggctgttcgcccattaaagcggcacgcgagctgggttcagaacgtcg 2606
Query: 50853 tgagacagttcggtccctatccgtcgcgggcgttggaaatttgagaggagctgtccttag 50912
||||||||||||||| ||||||| | |||||| ||| ||||| || ||| | | |||
Sbjct: 2607 tgagacagttcggtctctatccgccacgggcgcaggaggcttgaggggggctcttcctag 2666
Query: 50913 tacgagaggaccgggatggacttaccgctggtgtaccagttgttctgccaagggcat-tg 50971
|||||||||||||| | |||| ||| ||||| | |||| ||| | ||| |||||| |
Sbjct: 2667 tacgagaggaccggaagggacgcacctctggtttcccagctgtccctccaggggcataag 2726
Query: 50972 ctgggtagctatgtagggaagggataaacgctgaaagcatctaagtgtgaagcccacctc 51031
||||||||| |||| ||||||||||| ||||||||||||||||| | ||||||| || |
Sbjct: 2727 ctgggtagccatgtgcggaagggataaccgctgaaagcatctaagcgggaagcccgcccc 2786
Query: 51032 aagatgag 51039
||||||||
Sbjct: 2787 aagatgag 2794
Score = 176 bits (89), Expect = 3e-43
Identities = 167/193 (86%)
Strand = Plus / Plus
Query: 50144 gaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtc 50203
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 gaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtc 1968
Query: 50204 gggtaagttccgacccgcacgaaaggcgtaacgatttgggcactgtctcaacgagagact 50263
||||||||||||||| |||||||| ||||||||| | || ||||||| |||| |||
Sbjct: 1969 gggtaagttccgacctgcacgaaaagcgtaacgaccggagcgctgtctcggcgagggacc 2028
Query: 50264 cggtgaaattttagtacctgtgaagatgcaggttacccgcgacaggacggaaagacccca 50323
|||||||||| | | | |||||||||| | |||||| | ||||||| |||||||||
Sbjct: 2029 cggtgaaattgaactggccgtgaagatgcggcctacccgtggcaggacgaaaagaccccg 2088
Query: 50324 tggagctttactg 50336
|||||||||||||
Sbjct: 2089 tggagctttactg 2101
>Flx.flexil Flexibacter flexilis. 2818 bp
Length = 2818
Score = 460 bits (232), Expect = e-128
Identities = 467/549 (85%), Gaps = 1/549 (0%)
Strand = Plus / Plus
Query: 50498 gtttgactggggcggtcgcctcctaaaaggtaacggaggcgcccaaaggttccctcagaa 50557
||||||||| | ||||||||| |||| ||| ||||||| ||||||| ||||||| |
Sbjct: 2228 gtttgactgnngnngtcgcctccaaaaaagtatcggaggcnttcaaaggtaccctcagca 2287
Query: 50558 tggttggaaatcattcgaagagtgtaaaggcagaagggagcttgactgcgagaccaacaa 50617
| |||| || | | || |||||| || |||| ||||| |||||||| |||||| ||||
Sbjct: 2288 cgcttggtaaccgtgcgcagagtgcaatggcataagggnccttgactgtgagaccgacaa 2347
Query: 50618 gtcgagcagggacgaaagtcgggcttagtgatccggtggttccgcatggaagggccatcg 50677
|||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct: 2348 gtcgagcaggtacgaaagtaggacatagtgatccggtngttccgcatggaagggccatcg 2407
Query: 50678 ctcaacggataaaagctacccctggggataacaggcttatctcccccaagagtccacatc 50737
||||| ||||||||| ||| |||||||||| |||||||||||||| ||||||
Sbjct: 2408 ctcaaaggataaaaggtacgnnnnnn-ataacaggctgatctcccccaagagctcacatc 2466
Query: 50738 gacggggaggtttggcacctcgatgtcggctcgtcgcatcctggggctgtagtcggtccc 50797
||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 2467 gacggggaggtttggcacctcgatgtcggctcgtcacatcctggggctggagaaggtccc 2526
Query: 50798 aagggttgggctgttcgcccattaaagcggcacgcgagctgggttcagaacgtcgtgaga 50857
||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2527 aagggttggnctnttcgccgattaaagtggcacgcgagctgggttcagaacgtcgtgaga 2586
Query: 50858 cagttcggtccctatccgtcgcgggcgttggaaatttgagaggagctgtccttagtacga 50917
|||||||||||||||| || |||||||| |||| |||||| || |||| |||||||||||
Sbjct: 2587 cagttcggtccctatctgttgcgggcgtaggaattttgaggggggctgaccttagtacga 2646
Query: 50918 gaggaccgggatggacttaccgctggtgtaccagttgttctgccaagggcattgctgggt 50977
|||||||||| ||||| ||||||||||||| | ||||| |||| || ||||||| | ||
Sbjct: 2647 gaggaccgggttggacgtaccgctggtgtatcggttgtattgcccagtgcattgccgagt 2706
Query: 50978 agctatgtagggaagggataaacgctgaaagcatctaagtgtgaagcccacctcaagatg 51037
||||| || ||||| ||||| ||||||||||||||||| ||| | | || |||||||
Sbjct: 2707 agctaagtgcggaagagataagtgctgaaagcatctaagtacgaaactcgccccaagatg 2766
Query: 51038 agatttccc 51046
||| |||||
Sbjct: 2767 agaattccc 2775
Score = 256 bits (129), Expect = 5e-67
Identities = 276/320 (86%), Gaps = 4/320 (1%)
Strand = Plus / Plus
Query: 50019 ggcccaagcgactgtttatcaaaaacacaggtctctgcaaaatcgtaagatgaagtatag 50078
|||||| ||||||||||| |||||||||| | || ||| ||| || || |||||||||
Sbjct: 1758 ggcccaggcgactgtttaccaaaaacacatggctttgcgaaaacgagagttgaagtataa 1817
Query: 50079 gggctgacgcctgcccggtgctggaaggttaagaggagtgcttag-cgcaag-cgaaggt 50136
|| ||||| ||||||||||||||||||||||||||| | |||| |||||| |||||
Sbjct: 1818 ggcctgacacctgcccggtgctggaaggttaagaggggatgttagtcgcaaggcgaagca 1877
Query: 50137 acgaattgaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaatt 50196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 ttgaatcgaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaatt 1937
Query: 50197 ccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatttgggcactgtctcaac- 50255
|||||||||||||||||||||| ||||||| || |||||||| ||||| ||||||||||
Sbjct: 1938 ccttgtcgggtaagttccgacctgcacgaatggtgtaacgatctgggcgctgtctcaacc 1997
Query: 50256 gagagactcggtgaaattttagtacctgtgaagatgcaggttacccgcgacaggacggaa 50315
| ||| ||||||||||| ||||| | |||||||||| | ||||||| || ||||||||
Sbjct: 1998 gtgagt-tcggtgaaattgtagtagcggtgaagatgccgcntacccgcaacgggacggaa 2056
Query: 50316 agaccccatggagctttact 50335
||||||| || | |||||||
Sbjct: 2057 agaccccgtgcacctttact 2076
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,743
Number of Sequences: 1398
Number of extensions: 32743
Number of successful extensions: 4398
Number of sequences better than 1.0e-40: 50
Number of HSP's better than 0.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3520
Number of HSP's gapped (non-prelim): 686
length of query: 61,877
length of database: 1,019,713
effective HSP length: 18
effective length of query: 61,859
effective length of database: 994,549
effective search space: 61521806591
effective search space used: 61521806591
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 85 (169.0 bits)
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