Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 7 |
| Arg | 6 |
| Asn | 1 |
| Asp | 1 |
| Cys | 2 |
| Gln | 2 |
| Glu | 4 |
| Gly | 5 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 3 |
| Met | 2 |
| Phe | 2 |
| Pro | 4 |
| Pseudo | 1 |
| Ser | 4 |
| Thr | 5 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig1692 | 1 | 57432 ..57504 | 0..0 | 80.96 | 62.09 |
| Ala | GGC | Contig1398 | 1 | 2047..1972 | 0..0 | 89.44 | 73.20 |
| Ala | GGC | Contig1398 | 3 | 1760..1685 | 0..0 | 89.44 | 73.20 |
| Ala | GGC | Contig1735 | 1 | 20291..20366 | 0..0 | 77.33 | 57.12 |
| Ala | TGC | Contig1682 | 1 | 9869 ..9944 | 0..0 | 92.88 | 76.21 |
| Ala | TGC | Contig1682 | 2 | 62507..62582 | 0..0 | 92.88 | 76.21 |
| Ala | TGC | Contig1682 | 3 | 64461..64536 | 0..0 | 92.88 | 76.21 |
| Arg | CCG | Contig1076 | 1 | 3082..3006 | 0..0 | 87.45 | 70.75 |
| Arg | CCG | Contig1731 | 1 | 13227..13298 | 0..0 | 79.06 | 58.95 |
| Arg | CCT | Contig1692 | 2 | 75411 ..75487 | 0..0 | 79.28 | 50.34 |
| Arg | GCG | Contig1698 | 2 | 14333..14410 | 0..0 | 92.53 | 67.91 |
| Arg | TCG | Contig1706 | 2 | 19054 ..19129 | 0..0 | 87.08 | 68.95 |
| Arg | TCT | Contig1732 | 1 | 11966..12042 | 0..0 | 87.67 | 62.17 |
| Asn | GTT | Contig1706 | 8 | 126473..126399 | 0..0 | 87.38 | 59.69 |
| Asp | GTC | Contig1616 | 1 | 10136..10212 | 0..0 | 71.29 | 48.33 |
| Cys | GCA | Contig1584 | 4 | 2115 ..2041 | 0..0 | 79.24 | 49.97 |
| Cys | GCA | Contig213 | 2 | 3467..3540 | 0..0 | 59.40 | 43.26 |
| Gln | CTG | Contig1601 | 1 | 35887..35814 | 0..0 | 67.95 | 42.51 |
| Gln | TTG | Contig1706 | 7 | 126557..126484 | 0..0 | 72.97 | 44.53 |
| Glu | CTC | Contig1601 | 2 | 35800..35724 | 0..0 | 72.47 | 46.25 |
| Glu | TTC | Contig1398 | 2 | 1923..1848 | 0..0 | 56.09 | 26.55 |
| Glu | TTC | Contig1398 | 4 | 1626..1551 | 0..0 | 56.09 | 26.55 |
| Glu | TTC | Contig1692 | 3 | 110736..110661 | 0..0 | 59.05 | 36.57 |
| Gly | CCC | Contig1706 | 9 | 85549 ..85475 | 0..0 | 85.99 | 64.29 |
| Gly | GCC | Contig1584 | 3 | 2227 ..2153 | 0..0 | 87.73 | 64.20 |
| Gly | GCC | Contig213 | 1 | 3249..3324 | 0..0 | 93.55 | 69.69 |
| Gly | GCC | Contig213 | 3 | 3585..3660 | 0..0 | 93.55 | 69.69 |
| Gly | TCC | Contig1731 | 3 | 21533..21459 | 0..0 | 85.54 | 64.69 |
| His | GTG | Contig1706 | 1 | 18963 ..19038 | 0..0 | 72.92 | 46.45 |
| Ile | GAT | Contig1601 | 3 | 33420..33344 | 0..0 | 85.25 | 52.77 |
| Leu | CAA | Contig1706 | 6 | 126674..126588 | 0..0 | 73.28 | 36.24 |
| Leu | CAG | Contig1698 | 1 | 14241..14327 | 0..0 | 60.55 | 28.39 |
| Leu | GAG | Contig1584 | 2 | 2327 ..2241 | 0..0 | 55.85 | 23.62 |
| Leu | TAA | Contig1584 | 5 | 1317 ..1233 | 0..0 | 72.41 | 42.34 |
| Leu | TAG | Contig1713 | 2 | 6532 ..6448 | 0..0 | 70.38 | 44.98 |
| Lys | CTT | Contig1706 | 4 | 119428..119500 | 0..0 | 83.21 | 62.18 |
| Lys | TTT | Contig1434 | 1 | 706 ..781 | 0..0 | 93.92 | 73.58 |
| Lys | TTT | Contig1706 | 3 | 65413 ..65488 | 0..0 | 93.58 | 73.88 |
| Met | CAT | Contig1634 | 1 | 15374..15448 | 0..0 | 82.68 | 56.71 |
| Met | CAT | Contig1695 | 1 | 11347..11421 | 0..0 | 80.22 | 59.35 |
| Phe | GAA | Contig1706 | 5 | 126824..126749 | 0..0 | 88.85 | 61.42 |
| Phe | GAA | Contig666 | 1 | 3962..3887 | 0..0 | 94.71 | 72.63 |
| Pro | CGG | Contig1716 | 1 | 2897 ..2974 | 0..0 | 82.22 | 54.65 |
| Pro | CGG | Contig977 | 1 | 1076..1000 | 0..0 | 85.50 | 67.75 |
| Pro | GGG | Contig1713 | 1 | 8979 ..9055 | 0..0 | 85.57 | 64.87 |
| Pro | TGG | Contig1731 | 2 | 19417..19494 | 0..0 | 89.13 | 64.43 |
| Pseudo | TCC | Contig1705 | 1 | 92479 ..92554 | 0..0 | 32.88 | 6.66 |
| Ser | CGA | Contig1731 | 4 | 11486..11397 | 0..0 | 62.10 | 34.37 |
| Ser | GCT | Contig1447 | 1 | 2362 ..2271 | 0..0 | 75.63 | 47.21 |
| Ser | GGA | Contig1731 | 5 | 11363..11274 | 0..0 | 61.57 | 34.79 |
| Ser | TGA | Contig1693 | 1 | 4777 ..4688 | 0..0 | 64.81 | 30.40 |
| Thr | CGT | Contig1090 | 1 | 3248..3323 | 0..0 | 95.05 | 74.84 |
| Thr | CGT | Contig1714 | 1 | 30993..31067 | 0..0 | 85.07 | 60.35 |
| Thr | GGT | Contig1601 | 6 | 13265..13190 | 0..0 | 81.62 | 47.48 |
| Thr | TGT | Contig1322 | 1 | 209 ..284 | 0..0 | 92.58 | 63.63 |
| Thr | TGT | Contig1601 | 4 | 13524..13452 | 0..0 | 65.26 | 45.42 |
| Trp | CCA | Contig1584 | 1 | 2409 ..2333 | 0..0 | 84.12 | 59.76 |
| Tyr | GTA | Contig1601 | 5 | 13411..13328 | 0..0 | 62.07 | 33.07 |
| Val | CAC | Contig1736 | 1 | 70462..70537 | 0..0 | 93.20 | 75.65 |
| Val | GAC | Contig1609 | 1 | 12645..12569 | 0..0 | 90.24 | 65.22 |
| Val | TAC | Contig1698 | 3 | 14421..14497 | 0..0 | 100.99 | 80.70 |
tRNA Models
Contig1076.trna1 (3082-3006) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (3048-3046) Score: 87.45
HMM Sc=70.75 Sec struct Sc=16.70
* | * | * | * | * | * | * | *
Seq: GCGCCTGTAGCTCAGCCGGAtAGAGTAGCGGCTTCCGAAGCCGTTGGtCGGGGGTTCGAATCCCTCCAGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1090.trna1 (3248-3323) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (3281-3283) Score: 95.05
HMM Sc=74.84 Sec struct Sc=20.21
* | * | * | * | * | * | * | *
Seq: GCCGGAATAGCTCAGTTGGTAGAGCGGCGCATTCGTAATGCGTAGGtCGCAGGTTCGACTCCTGTTTCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1322.trna1 (209-284) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (242-244) Score: 92.58
HMM Sc=63.63 Sec struct Sc=28.95
* | * | * | * | * | * | * | *
Seq: GCCGCTTTAGCTCAGTCGGTAGAGCACTCGCCTTGTAAGCGAGCGGtCGTCCGTTCGATTCGGACAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1398.trna1 (2047-1972) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (2014-2012) Score: 89.44
HMM Sc=73.20 Sec struct Sc=16.24
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGtCGCCGGTTCGATCCCGGCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1398.trna2 (1923-1848) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1889-1887) Score: 56.09
HMM Sc=26.55 Sec struct Sc=29.54
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACATTACCCTTTCACGGTAGCGACCGGGGTTCGAATCCCCGTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1398.trna3 (1760-1685) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1727-1725) Score: 89.44
HMM Sc=73.20 Sec struct Sc=16.24
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGtCGCCGGTTCGATCCCGGCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1398.trna4 (1626-1551) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1592-1590) Score: 56.09
HMM Sc=26.55 Sec struct Sc=29.54
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACATTACCCTTTCACGGTAGCGACCGGGGTTCGAATCCCCGTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1434.trna1 (706-781) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (739-741) Score: 93.92
HMM Sc=73.58 Sec struct Sc=20.34
* | * | * | * | * | * | * | *
Seq: GGGTCGTTAGCTCAGTCGGTAGAGCATCGGACTTTTAATCCGCTGGtCGATGGTTCGAATCCATCACGACCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig1447.trna1 (2362-2271) Length: 92 bp
Type: Ser Anticodon: GCT at 35-37 (2328-2326) Score: 75.63
HMM Sc=47.21 Sec struct Sc=28.42
* | * | * | * | * | * | * | * | * |
Seq: GGGGGGGTCGCATAGTGGTctAGTGCGGGCGCCTGCTAAGCGCTTGCCCCGGGAAACCGGGGtCGAGGGTTCGAATCCCTCCCCCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...>>>>>....<<<<<...>>>>>.......<<<<<<<<<<<<....
Contig1584.trna1 (2409-2333) Length: 77 bp
Type: Trp Anticodon: CCA at 35-37 (2375-2373) Score: 84.12
HMM Sc=59.76 Sec struct Sc=24.36
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAGTCcGGTAGAGCAGCGGTCTCCAAAACCGCCGGtCGAGGGTTCGAATCCTTCCACTCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1584.trna2 (2327-2241) Length: 87 bp
Type: Leu Anticodon: GAG at 34-36 (2294-2292) Score: 55.85
HMM Sc=23.62 Sec struct Sc=32.23
* | * | * | * | * | * | * | * | *
Seq: GCCGAGATGGTGGAATGGCaGACACGCTAGCTTGAGGGGCTAGTGAGTGATGaGCTcGTGGGAGTTCAAATCTCCCTCTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....
Contig1584.trna3 (2227-2153) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2195-2193) Score: 87.73
HMM Sc=64.20 Sec struct Sc=23.53
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGCGGTAGAATGCCTCCTTGCCAAGGAGGAGGtCGCGAGTTCGAATCTCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1584.trna4 (2115-2041) Length: 75 bp
Type: Cys Anticodon: GCA at 33-35 (2083-2081) Score: 79.24
HMM Sc=49.97 Sec struct Sc=29.27
* | * | * | * | * | * | * |
Seq: GGCGACGTAGCCAAGTGGCAAGGCAGGGGTCTGCAAAACCCCTATtCAGCGGTTCGAATCCGCTCGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1584.trna5 (1317-1233) Length: 85 bp
Type: Leu Anticodon: TAA at 35-37 (1283-1281) Score: 72.41
HMM Sc=42.34 Sec struct Sc=30.07
* | * | * | * | * | * | * | * |
Seq: GCCGGGGTGGCGGAATCGGCaGACGCAGCGGACTTAAAATCCGCCGGAGTAATCCtTGTGGGTTCGACCCCCACCCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>....<<...>>>>>.......<<<<<<<<<<<<....
Contig1601.trna1 (35887-35814) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (35855-35853) Score: 67.95
HMM Sc=42.51 Sec struct Sc=25.44
* | * | * | * | * | * | * |
Seq: TGGGGAATCGTCTAGCGGTAGGACAGCGGACTCTGAATCCGTATGGGAAGGTTCGAATCCTTCTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1601.trna2 (35800-35724) Length: 77 bp
Type: Glu Anticodon: CTC at 35-37 (35766-35764) Score: 72.47
HMM Sc=46.25 Sec struct Sc=26.22
* | * | * | * | * | * | * | *
Seq: GGCGCATTCGTCTAGCGGCctAGGACGCGTCCCTCTCAAGGACGAGAtCACCGGTTCGAATCCGGTATGCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1601.trna3 (33420-33344) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (33386-33384) Score: 85.25
HMM Sc=52.77 Sec struct Sc=32.48
* | * | * | * | * | * | * | *
Seq: GGGCCATTAGCTCAGCTGGTtAGAGCGCAGTCCTGATAAGACTGAGGtCCTTGGTTCGAGACCAAGATGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1601.trna4 (13524-13452) Length: 73 bp
Type: Thr Anticodon: TGT at 33-35 (13492-13490) Score: 65.26
HMM Sc=45.42 Sec struct Sc=19.84
* | * | * | * | * | * | * |
Seq: GCCCGAGTGGCGCAAAGGAAGCGCAACCGACTTGTAATCGGTAGGtTAGcGGGTTCGAATCCCCTCTCGGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<<<<<.
Contig1601.trna5 (13411-13328) Length: 84 bp
Type: Tyr Anticodon: GTA at 35-37 (13377-13375) Score: 62.07
HMM Sc=33.07 Sec struct Sc=29.00
* | * | * | * | * | * | * | * |
Seq: GGAGAGGTGCCGGAGTGGTtaATCGGAGCAGACTGTAAATCTGCCGCCCTAAGGGCTaCGCAGGTTCGAACCCTGCCCTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>...<<<<...>>>>>.......<<<<<<<<<<<<.
Contig1601.trna6 (13265-13190) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (13232-13230) Score: 81.62
HMM Sc=47.48 Sec struct Sc=34.14
* | * | * | * | * | * | * | *
Seq: GCCCACATAGCTCAGTAGGTAGAGCACGTTCTTGGTAAGAACGGGGtCATCAGTTCGAATCTGATTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1609.trna1 (12645-12569) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (12611-12609) Score: 90.24
HMM Sc=65.22 Sec struct Sc=25.02
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGTTGGTtAGAGCGCAGCGTTGACATCGCTGAGGtCAGTGGTTCGACCCCACTACCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1616.trna1 (10136-10212) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (10170-10172) Score: 71.29
HMM Sc=48.33 Sec struct Sc=22.96
* | * | * | * | * | * | * | *
Seq: GGCCCCATGGTGTAGCGGTctAACATGCCACCCTGTCACGGTGGAGAtCGGGGGTTCGAATCCCCCTGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1634.trna1 (15374-15448) Length: 75 bp
Type: Met Anticodon: CAT at 33-35 (15406-15408) Score: 82.68
HMM Sc=56.71 Sec struct Sc=25.97
* | * | * | * | * | * | * |
Seq: CGCGGGGTGGAGCAGTGGTAGCTCGTCGGGCTCATAACCCGAAGGcCATAGGTTCGAATCCTATCCCCGCTACCA
Str: .>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig1682.trna1 (9869-9944) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (9902-9904) Score: 92.88
HMM Sc=76.21 Sec struct Sc=16.67
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTTAGTCGGGAGAGCGCCTCCTTTGCAAGGAGGAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1682.trna2 (62507-62582) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (62540-62542) Score: 92.88
HMM Sc=76.21 Sec struct Sc=16.67
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTTAGTCGGGAGAGCGCCTCCTTTGCAAGGAGGAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1682.trna3 (64461-64536) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (64494-64496) Score: 92.88
HMM Sc=76.21 Sec struct Sc=16.67
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTTAGTCGGGAGAGCGCCTCCTTTGCAAGGAGGAGGtCAGGGGTTCGAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1692.trna1 (57432-57504) Length: 73 bp
Type: Ala Anticodon: CGC at 34-36 (57465-57467) Score: 80.96
HMM Sc=62.09 Sec struct Sc=18.87
* | * | * | * | * | * | * |
Seq: GGGGCTGTAGCTTAGTTGGGAGAGCGCTGCGTTCGCATCGCAGAGGtCAGGGGTTCGAATCCCCTCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1692.trna2 (75411-75487) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (75445-75447) Score: 79.28
HMM Sc=50.34 Sec struct Sc=28.94
* | * | * | * | * | * | * | *
Seq: GCCCCTGTAGCTCAGCAGGAtAGAGCAGCGGTTTCCTAAACCGCGTGtCGGGCGTTCGAATCGCCCCAGGGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1692.trna3 (110736-110661) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (110702-110700) Score: 59.05
HMM Sc=36.57 Sec struct Sc=22.48
* | * | * | * | * | * | * | *
Seq: GCCCCCATCGTCTAGAGGCccAGGACAGCGGCCTTTCACGCCGTCAACAGGGGTTCGAATCCCCTTGGGGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1693.trna1 (4777-4688) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (4743-4741) Score: 64.81
HMM Sc=30.40 Sec struct Sc=34.41
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTGTCCGAGCGGTctATGGTGACGGTCTTGAAAACCGTTGTTCCCGAAAGAGAACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>...>>>.........<<<..>>>>>.......<<<<<.>>>>.>....<.<<<<.>>>>>.......<<<<<<<<<<<<....
Contig1695.trna1 (11347-11421) Length: 75 bp
Type: Met Anticodon: CAT at 33-35 (11379-11381) Score: 80.22
HMM Sc=59.35 Sec struct Sc=20.87
* | * | * | * | * | * | * |
Seq: GGCAGCGTAGCTCAGTGGCAGAGCAGGGGACTCATAAGCCCTTGGtCGGTAGTTCAAATCTACCCGCTGCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1698.trna1 (14241-14327) Length: 87 bp
Type: Leu Anticodon: CAG at 34-36 (14274-14276) Score: 60.55
HMM Sc=28.39 Sec struct Sc=32.16
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGCGGAACGGCaGACGCGCTACGTTCAGGGCGTAGTACCTGTAAtGGGTGTGAGAGTTCAAATCTCTCCTTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig1698.trna2 (14333-14410) Length: 78 bp
Type: Arg Anticodon: GCG at 36-38 (14368-14370) Score: 92.53
HMM Sc=67.91 Sec struct Sc=24.62
* | * | * | * | * | * | * | *
Seq: GCGCTTGTAGCTCAGTTGGAttAGAGCGCAGCCCTGCGAAGGCTGAGGtCGTGGGTTCGAGTCCCACCAAGCGCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1698.trna3 (14421-14497) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (14455-14457) Score: 100.99
HMM Sc=80.70 Sec struct Sc=20.29
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGCTGGTtAGAGCACCTGCTTTACACGCAGGGGGtCATAGGTTCGAATCCTATACCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1705.trna1 (92479-92554) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (92512-92514) Score: 32.88
Possible pseudogene: HMM Sc=6.66 Sec struct Sc=26.22
* | * | * | * | * | * | * | *
Seq: GCGCCGCTAGTGTAATGGTaAGCACGCCACTCATCCAGAGTGAAGGTCGGGGTCCGACTCCCaCGGCGGCGCTCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<.....>>>>>.......<<<.<<<<<<<<<....
Contig1706.trna1 (18963-19038) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (18996-18998) Score: 72.92
HMM Sc=46.45 Sec struct Sc=26.47
* | * | * | * | * | * | * | *
Seq: GTGAGTGTGGCCTAGCGGTtAAGGCACCAGGTTGTGGCCCTGGAGAtCGTGGGTTCAAGTCCCATCACTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1706.trna2 (19054-19129) Length: 76 bp
Type: Arg Anticodon: TCG at 34-36 (19087-19089) Score: 87.08
HMM Sc=68.95 Sec struct Sc=18.13
* | * | * | * | * | * | * | *
Seq: GCGCCTATAGCTCAGTGGAtAGAGCATCGGTCTTCGGAACCGAGGGtCGTGGGTTCGAATCCCTCTAGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig1706.trna3 (65413-65488) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (65446-65448) Score: 93.58
HMM Sc=73.88 Sec struct Sc=19.70
* | * | * | * | * | * | * | *
Seq: GGGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCACAGGTTCGAGACCTGTACGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1706.trna4 (119428-119500) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (119461-119463) Score: 83.21
HMM Sc=62.18 Sec struct Sc=21.03
* | * | * | * | * | * | * |
Seq: GGGCCGATAGCTCAATTGGCAGAGCAATTGACTCTTAATCAATTGGtTGGAGGTTCGAGTCCTCCTCGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1706.trna5 (126824-126749) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (126791-126789) Score: 88.85
HMM Sc=61.42 Sec struct Sc=27.43
* | * | * | * | * | * | * | *
Seq: GCCGAGGTAGCTCAGCCGGTAGAGCAGCGGACTGAAAATCCGCGTGtCCCCAGTTCGATCCTGGGCCTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1706.trna6 (126674-126588) Length: 87 bp
Type: Leu Anticodon: CAA at 34-36 (126641-126639) Score: 73.28
HMM Sc=36.24 Sec struct Sc=37.04
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGCGGAATGGCaGACGCGGCAGTCTCAAACACTGCTGGGGGTAAACCTCGTGTCGGTTCGAGTCCGACCTTCGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig1706.trna7 (126557-126484) Length: 74 bp
Type: Gln Anticodon: TTG at 33-35 (126525-126523) Score: 72.97
HMM Sc=44.53 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: TGGCGAGTTGTGTAGTGGTAGCACAGAGGACTTTGAATCCTTATGCCCAGGTTCGAATCCTGGCTCGCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1706.trna8 (126473-126399) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (126441-126439) Score: 87.38
HMM Sc=59.69 Sec struct Sc=27.69
* | * | * | * | * | * | * |
Seq: TCCCGAGTAGCTCAGTGGTAGAGCGGGCGGCTGTTAACCGCTTGGtCGTAGGTTCGAGTCCTACCTCGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1706.trna9 (85549-85475) Length: 75 bp
Type: Gly Anticodon: CCC at 33-35 (85517-85515) Score: 85.99
HMM Sc=64.29 Sec struct Sc=21.70
* | * | * | * | * | * | * |
Seq: GCGGGTGTAACTCAGCGGTAGAGTGCTTGCTTCCCAAGCAAGACGtCGCGGGTTCGAATCCCGTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1713.trna1 (8979-9055) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (9013-9015) Score: 85.57
HMM Sc=64.87 Sec struct Sc=20.70
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGCAGCCtGGTAGCGCACCTGAATGGGGTTCAGGTGGtCGGAGGTTCAAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1713.trna2 (6532-6448) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (6498-6496) Score: 70.38
HMM Sc=44.98 Sec struct Sc=25.40
* | * | * | * | * | * | * | * |
Seq: GGGGGAGTGCCGGAATTGGCaGACGGGCATGACTTAGGATCATGTGTCGAAAGGCGTCGGGGTTCGAGTCCCCGCTTCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig1714.trna1 (30993-31067) Length: 75 bp
Type: Thr Anticodon: CGT at 33-35 (31025-31027) Score: 85.07
HMM Sc=60.35 Sec struct Sc=24.72
* | * | * | * | * | * | * |
Seq: GCCAGCGTGGCTCAGAGGTAGAGCAGCGGTTTCGTAAACCGCCGGtCGGAGGTTCGAATCCTCTCGCTGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1716.trna1 (2897-2974) Length: 78 bp
Type: Pro Anticodon: CGG at 36-38 (2932-2934) Score: 82.22
HMM Sc=54.65 Sec struct Sc=27.57
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTtAGCGCGCAGCGTTCGGGACGCTGAGGcCGGAAGTTCGAATCTTCTCGCCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1731.trna1 (13227-13298) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (13260-13262) Score: 79.06
HMM Sc=58.95 Sec struct Sc=20.11
* | * | * | * | * | * | * |
Seq: GCCTCTGTAGCTCAGTGGAtAGAGCACCAGCCTCCGAAGCTGGTGGCGAGAGTTCGAGTCTCTCCAGGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig1731.trna2 (19417-19494) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (19452-19454) Score: 89.13
HMM Sc=64.43 Sec struct Sc=24.70
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGCAGTCtGGTtAGCGCGCAGCGTTTGGGACGCTGAAGtCGGAGGTTCGAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1731.trna3 (21533-21459) Length: 75 bp
Type: Gly Anticodon: TCC at 33-35 (21501-21499) Score: 85.54
HMM Sc=64.69 Sec struct Sc=20.85
* | * | * | * | * | * | * |
Seq: GCGGGAGTAACTCAGTGGTAGAGTTCCTGCCTTCCAAGCAGGCTGtCGCGGGTTCGAGCCCCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1731.trna4 (11486-11397) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (11452-11450) Score: 62.10
HMM Sc=34.37 Sec struct Sc=27.73
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGTCCGAGTGGTtgATGGTGCTGCTCTCGAAAAGCGGTCTCCGTGAAAGCGGAGCGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>...>>>.........<<<..>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig1731.trna5 (11363-11274) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (11329-11327) Score: 61.57
HMM Sc=34.79 Sec struct Sc=26.78
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGCTGGAGTGGTctATCAGGCACGCCTGGAAAGCGTGTGTCGCCGCAAGGTGACCGTGGGTTCGAATCCCACCTTCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig1732.trna1 (11966-12042) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (12000-12002) Score: 87.67
HMM Sc=62.17 Sec struct Sc=25.50
* | * | * | * | * | * | * | *
Seq: GTCCCCGTAGCTCAGCTGGAtAGAGCAACTGCCTTCTAAGTAGTGGGtCGAGAGTTCGAATCTCTCCGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1735.trna1 (20291-20366) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (20324-20326) Score: 77.33
HMM Sc=57.12 Sec struct Sc=20.21
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGTTCACTTGGGAGAACGTTTGACTGGCAGTCAAAAGGtAGAGGGTTCGAATCCCTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig1736.trna1 (70462-70537) Length: 76 bp
Type: Val Anticodon: CAC at 34-36 (70495-70497) Score: 93.20
HMM Sc=75.65 Sec struct Sc=17.55
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGTGGTtAGAGCACCTGCTTCACACGCAGGGGGtCAGTGGTTCAAATCCACTACTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig213.trna1 (3249-3324) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (3282-3284) Score: 93.55
HMM Sc=69.69 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACTACCTTGCCAAGGTAGATGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig213.trna2 (3467-3540) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (3499-3501) Score: 59.40
HMM Sc=43.26 Sec struct Sc=16.14
* | * | * | * | * | * | * |
Seq: GGCCGGGTGGCAGAGTGGTTATGCAGCGGACTGCAAATCCGCGTACGCCGGTTCAATTCCGACCTCGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....
Contig213.trna3 (3585-3660) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (3618-3620) Score: 93.55
HMM Sc=69.69 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACTACCTTGCCAAGGTAGATGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig666.trna1 (3962-3887) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3929-3927) Score: 94.71
HMM Sc=72.63 Sec struct Sc=22.08
* | * | * | * | * | * | * | *
Seq: GGCCGGGTAGCTCAGTTGGTAGAGCAGGGGATTGAAAATCCCCGTGtCGGGGGTTCGATTCCCTCCCCGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig977.trna1 (1076-1000) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (1042-1040) Score: 85.50
HMM Sc=67.75 Sec struct Sc=17.75
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCTCAGTCtGGTAGAGCGCTACGTTCGGGACGTAGAGGtCGCAGGTTCGAATCCTGTCTCCCCGACCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....
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