Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig1601	RNAmmer-1.2	rRNA	33673	35157	1675.3	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig1735	RNAmmer-1.2	rRNA	12924	13041	65.6	+	.	5s_rRNA	
 Contig1735	RNAmmer-1.2	rRNA	9873	12821	2785.5	+	.	23s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig1601_33673-35157_DIR- /molecule=16s_rRNA /score=1675.3
 AGAGTTTGATCCTGGCTCAGGATGAACGCTAGCGGCGTGCCTTATGCATGCAAGTCGAAC
 GGTCTTAAGCAATTAAGATAGTGGCAAACGGGTGAGTAACGCGTAAGTAACCTACCTCTA
 AGTGGGGGATAGCTTCGGGAAACTGAAGGTAATACCGCATGTGGTGGGCCGACATAAGTT
 GGTTCACTAAAGCCGTAAGGTGCTTGGTGAGGGGCTTGCGTCCGATTAGCTAGTTGGTGG
 GGTAACGGCCTACCAAGGCTTCGATCGGTAGCTGGTCTGAGAGGATGATCAGCCACACTG
 GGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGCAAGGAATCTTGGGCAATGGG
 CGAAAGCCTGACCCAGCAACGCCGCGTGAGGGATGAAGGCTCTCGGGTTGTAAACCTCTT
 TTCACAGGGAAGAATAATGACGGTACCTGTGGAATAAGCTTCGGCTAACTACGTGCCAGC
 AGCCGCGGTAATACGTAGGAAGCAAGCGTTATCCGGATTTATTGGGCGTAAAGTGAGCGT
 AGGTGGTCTTTCAAGTTGGATGTGAAATTTCCCGGCTTAACCGGGACGTGTCATTCAATA
 CTGTTGGACTAGAGTACAGCAGGAGAAAACGGAATTCCCGGTGTAGTGGTAAAATGCGTA
 GATATCGGGAGGAACACCAGAGGCGAAGGCGGTTTTCTAGGTTGTCACTGACACTGAGGC
 TCGAAAGCGTGGGGAGCGAACAGAATTAGATACTCTGGTAGTCCACGCCTTAAACTATGG
 ACACTAGGTATAGGGAGTATCGACCCTCTCTGTGCCGAAGCTAACGCTTTAAGTGTCCCG
 CCTGGGGAGTACGGTCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCA
 GCGGAGCGTGTGGTTTAATTCGATGCTACACGAAGAACCTTACCAAGATTTGACATGCAT
 GAAGTAGTGAACCGAAAGGGAAACGACCTGTTAAGTCAGGAGTTTGCACAGGTGCTGCAT
 GGCTGTCGTCAGCTCGTGCCGTGAGGTGTTTGGTTAAGTCCTGCAACGAGCGCAACCCTT
 GTTGCTAGTTAAATTTTCTAGCGAGACTGCCCCGCGAAACGGGGAGGAAGGTGGGGATGA
 CGTCAAGTCAGCATGGCCTTTATATCTTGGGCTACACACACGCTACAATGGACAGAACAA
 TAGGTTGCAACAGTGTGAACTGGAGCTAATCCTCAAAGCTGTCCTCAGTTCGGATTGCAG
 GCTGAAACCCGCCTGCATGAAGTTGGAGTTGCTAGTAACCGCATATCAGCAAGGTGCGGT
 GAATACGTTCTCGGGCCTTGTACACACCGCCCGTCACGTCATGAAAGCCGGTAACACTTG
 AAGTCGATGTGCCAACCGCAAGGAGGCAGTCGCCGAGGGTGGGACTGGTAATTGGGACGA
 AGTCGTAACAAGGTAGCCGTAGCGGAAGCTGCGGCTGGATCACCT
 >rRNA_Contig1735_12924-13041_DIR+ /molecule=5s_rRNA /score=65.6
 TGGTGGTTAGAGCGGGGTGGTACCACCCGTTCCCGTCCCGAACACGGTCGTGAAACGCCC
 CAGCGCAGACGATACTTAGGAGGCAACTCCTTGTGGAAAATATGCCACTGCCCGGGGA
 >rRNA_Contig1735_9873-12821_DIR+ /molecule=23s_rRNA /score=2785.5
 TCAAGCAGGTAAGGGCACATGGTGGATGCCTTGGTATCAAGAGCCGATGAAGGACGTGGT
 AAGGCTGCGATAAGCCTCGGTCAGCTGTCTAACAAGCTTAGCCGGGGATTTCCGAATGGG
 GCAACCCGCTCAGGCAAAACCTGAGTACTCCCAGCTCAACACATAGGCTGGGTAGAGGTA
 AGTGGGGGAAGTGAAACATCTCAGTACCCCGAGGAAAAGAAATTATTCTCCTAGTAGCGG
 CGAGCGAACGGGGATGAGCCCAAACCTTGTAATCTTAGTGGTTCTGTGACCTATGTTTAC
 AAGGGGTTGAAAGAAGAATCTGGTTTGTGCAGAGCAAGCCGAGAAGTTACAAACCTAACC
 CTATTAGAAGGTCCCTGGAACGGGCAACCACAGAGGGTGAGAGTCCCGTAAATTAAAGGG
 TGTAGGCTTCTGATTCTTTCTTAAGTACCACGAGACTCGTGGAATCTCGTGGGAATCCGC
 CGTGACCACATGGCAAGGCTAAATACTCTTGATGACCGATAGTGAACTAGTACCGTGAGG
 GAAAGGTGAAAAGCACCCCGAGAGGGGAGTGAAATAGAACTGAAACCGTGTGCCTACAAG
 CAGTCAGAGGAGCGTAAGCTCTGATGGCGTGACTATTGAAGAATTATCCGACGAGTTACT
 CAGTGCAGCTGGTTAAGCAATTAAGTTGCGCAGCCGAAGCGAAAGCGAGTCTGAATAGGG
 CGTTTTAGTTGTACTGAGTAGACCCGAAGCCGGGTGATCTATCCATGGCCATGGTGAAGT
 GAAGGTAATACTTCGCGGAGGCCCGAACCAGTCAACGTGGCAAAGTTGTTGGATGAGCTG
 TGGATAGCGGTTATATGCCAAACGAACCCGGGGATAGCTGGTTCTCCTCGAAATGCATTT
 AGGTGCAGCCTCAGGCGTTCATTAATGGAGGTAGTGCACTGGATAGACTAGGTGGGAGAG
 ATCCTGTCAACTCTAACCAAACATCGAATGCCATTAATCAAAGCCTGGGAGTGAGACTAT
 GGGGGCTAAGCTCCGTAGTCAAAAGGGAAACAGCCCAGACCATCAGCTAAGGTCCCTAAG
 CGCAGGCTAAGTGGGAAAGGAAGTAGCATTGCCTAGACATCCAGTAGGTTGGCTTAGAAG
 CAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGGTTGAGTGGTGTTGCGCCGACAATC
 CAACGGGGCTTAAGCCTGTCACCGAAGCTATGGATCTACCTATATGGTAGATGGTAGAGG
 AGCGTTCCCTCGGCAGTGAAGCAGGAGTGTAAACAACTGTGGAGCTTAGGGAAGTGAGAA
 TGTCGGAATGAGTAGCGCAAGGCGTGTGAGAAACACGCCCACCGTAAACCTAAGGTTTCC
 TACGCAAGGTTAATCCGCGTAGGGTTAGTCGGACCTAAGCCGAGGCCGAAAGGCGTAGAG
 CGATGGACAGCAGGTTATTATTCCTGCACCACCGTTGTGGAGGTAAAGGGGGGACACAGG
 AGGATAGATCAGGCATGCCCATTGGACATGGCGTGTCGCTGAACCCTAGACGTTTCAGAA
 TAGGCAAATCCGTTCTGGAGTTAAGTTGAAGTTCAGTGGAAGGTGCGGAGAGATCCAAGC
 CGATCTGGTTGAGTCCAAGCTGTCGAGAAAAGCCTCGTTACTGTTGAAGCAATGGTGACC
 GTACCGCAAACCGACACTGGTAGGTGGGGGTAAATGTCCCAAGGTGATCGAGATAACCCT
 CGTTAAGGAACTCGGCAATCTAGCCCCGTAACTTCGGGAGAAGGGGTGCCCTCGCGAGAG
 GGTTACAATAAAGTGGCTCGAGTGACTGTTTAACAAAGACACAGGTCTCTGCAAAAGCGA
 AAGCTGAAGTATAGGGGCTGACACCTGCCCAGTGCTGGAAGGTTAAGGGGAGGAGTTAGG
 GCAACCAAAGCTCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAA
 GGTAGCGAAATCCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGTATAACAACTTGAGC
 GCTGTCTTAACGAGGGACTCGGTGAAATTGAATTACCCGTGAAGATGCGGGTTTCCCGCG
 ACTGGACAAAAAGACCCCGTGGAGCTTTACTATAACTTGCCATTGAGTCTGGGTTCATCA
 TGTGTAGGATAGGTGGGAGGCTGAGAAGCCAGGGCGCTAGCCTTGGTGGAGCCAACGTTG
 AAATACCACTCTTGATGGATCTAGCCTCTAACTCTAGAACAAGCTAGAGGACAGTGGCTG
 GTGGATAGTTTGACTGGGGCGGTCGCCTCCTAAATTGTAACGGAGGCGCCCAAAGGTTCC
 CTCAGGGTGGATGGAAATCACCCTAAGAGTGCATTGGCATAAGGGAGCTTGACTGCGAGA
 CATACAAGTCGAGCAGGGACGAAAGTCGGGCAAAGTGATCCTACGGCACTGAGTGGAAGG
 GCCGTGGCTTATCGGATAAAAGCTACCCCGGGGATAACAGGCTTATCTTGCCCAAGAGTT
 CACATCGACGGCAAGGTTTGGCACCTCTATGTCGGCTCGTCGCATCCTGGGGCTGGAGTA
 GGTCCCAAGGGTCCGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGACCGTC
 GTGAGACAGGTCGGTCTCTATCCGTCGTGGGCGTCTGGAGATTTGAGAGGGTCTTTCCAT
 AGTACGAGAGGACCTGGAAGGACAGACCAATGGTGTGTCAGTTGTTCTGCCAAGGGCATT
 GCTGAGTAGCCAAGTCTGGTTTGGATAAGCGCTGAAAGCATCTAAGTGCGAAGCCGGCCT
 CAAGATTAGATCTCCCATCCCGGGCAACCGGGGGTAAGACCGCAGGTAGACTACCTGCTT
 GATAGGCTGCATGTGTAAGTACGGTAACGTATTAAGCTGAGCAGTACTAATGGTCGAGGG
 CTTGACCTG