Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig28	RNAmmer-1.2	rRNA	24070	24182	83.1	-	.	5s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig2	RNAmmer-1.2	rRNA	388	500	83.1	+	.	5s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig33	RNAmmer-1.2	rRNA	10236	10348	83.1	-	.	5s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig38	RNAmmer-1.2	rRNA	430	542	83.1	+	.	5s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig45	RNAmmer-1.2	rRNA	103221	103333	83.1	-	.	5s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig28_24070-24182_DIR- /molecule=5s_rRNA /score=83.1
 TGATGACCATAGCGAGTCGGTCCCACCCCTTCCCATCCCGAACAGGACCGTGAAACGACT
 CCACGCCGATGATAGTGCGGATTACCCGTGTGAAAGTAGGTAATCGTCAGGCT
 >rRNA_Contig2_388-500_DIR+ /molecule=5s_rRNA /score=83.1
 TGATGACCATAGCGAGTCGGTCCCACCCCTTCCCATCCCGAACAGGACCGTGAAACGACT
 CCACGCCGATGATAGTGCGGATTACCCGTGTGAAAGTAGGTAATCGTCAGGCT
 >rRNA_Contig33_10236-10348_DIR- /molecule=5s_rRNA /score=83.1
 TGATGACCATAGCGAGTCGGTCCCACCCCTTCCCATCCCGAACAGGACCGTGAAACGACT
 CCACGCCGATGATAGTGCGGATTACCCGTGTGAAAGTAGGTAATCGTCAGGCT
 >rRNA_Contig38_430-542_DIR+ /molecule=5s_rRNA /score=83.1
 TGATGACCATAGCGAGTCGGTCCCACCCCTTCCCATCCCGAACAGGACCGTGAAACGACT
 CCACGCCGATGATAGTGCGGATTACCCGTGTGAAAGTAGGTAATCGTCAGGCT
 >rRNA_Contig45_103221-103333_DIR- /molecule=5s_rRNA /score=83.1
 TGATGACCATAGCGAGTCGGTCCCACCCCTTCCCATCCCGAACAGGACCGTGAAACGACT
 CCACGCCGATGATAGTGCGGATTACCCGTGTGAAAGTAGGTAATCGTCAGGCT