Top 20 Categories

Top 20 InterPro

459	NULL	NULL
211	IPR003593	AAA+ ATPase, core
167	IPR011701	Major facilitator superfamily MFS-1
165	IPR003439	ABC transporter related
164	IPR000847	Bacterial regulatory protein, LysR
162	IPR005119	LysR, substrate-binding
161	IPR007114	Major facilitator superfamily
115	IPR000515	Binding-protein-dependent transport systems inner membrane component
109	IPR001789	Response regulator receiver
106	IPR002198	Short-chain dehydrogenase/reductase SDR
95	IPR002347	Glucose/ribitol dehydrogenase
76	IPR013968	KR
75	IPR003594	ATP-binding region, ATPase-like
70	IPR005467	Histidine kinase
67	IPR000005	Helix-turn-helix, AraC type
64	IPR004358	Histidine kinase related protein, C-terminal
58	IPR001851	Bacterial inner-membrane translocator
57	IPR003661	Histidine kinase A, N-terminal
56	IPR000524	Bacterial regulatory protein GntR, HTH
54	IPR001509	NAD-dependent epimerase/dehydratase

Top 20 HMMPfam

167	PF07690	MFS_1
164	PF00126	HTH_1
162	PF03466	LysR_substrate
154	PF00005	ABC_tran
115	PF00528	BPD_transp_1
106	PF00106	adh_short
102	PF00072	Response_reg
76	PF08659	KR
75	PF02518	HATPase_c
59	PF00165	HTH_AraC
58	PF02653	BPD_transp_2
57	PF00512	HisKA
54	PF01370	Epimerase
54	PF00392	GntR
53	PF01266	DAO
52	PF00083	Sugar_tr
41	PF00672	HAMP
41	PF00440	TetR_N
37	PF00561	Abhydrolase_1
37	PF00171	Aldedh

Top 20 HMMTigr

43	TIGR01409	TAT_signal_seq
29	TIGR01726	HEQRo_perm_3TM
28	TIGR00254	GGDEF
21	TIGR00229	sensory_box
18	TIGR01845	outer_NodT
17	TIGR02937	sigma70-ECF
12	TIGR01930	AcCoA-C-Actrans
12	TIGR01730	RND_mfp
12	TIGR00711	efflux_EmrB
11	TIGR01509	HAD-SF-IA-v3
9	TIGR00231	small_GTP
8	TIGR02532	IV_pilin_GFxxxE
8	TIGR01727	oligo_HPY
7	TIGR01901	adhes_NPXG
6	TIGR01493	HAD-SF-IA-v2
6	TIGR00915	2A0602
6	TIGR00778	ahpD_dom
6	TIGR00369	unchar_dom_1
5	TIGR03025	EPS_sugtrans
5	TIGR03023	WcaJ_sugtrans

Top 20 ProfileScan

196	PS00013	PROKAR_LIPOPROTEIN
162	PS50931	HTH_LYSR
161	PS50850	MFS
153	PS50893	ABC_TRANSPORTER_2
115	PS50928	ABC_TM1
108	PS50110	RESPONSE_REGULATORY
70	PS50109	HIS_KIN
60	PS01124	HTH_ARAC_FAMILY_2
55	PS50949	HTH_GNTR
42	PS50977	HTH_TETR_2
36	PS50885	HAMP
32	PS51186	GNAT
31	PS51007	CYTC
29	PS51085	2FE2S_FER_2
29	PS50887	GGDEF
24	PS50043	HTH_LUXR_2
22	PS50995	HTH_MARR_2
22	PS50111	CHEMOTAXIS_TRANSDUC_2
21	PS51078	ICLR_ED
21	PS50112	PAS

Top 20 FPrintScan

102	PR00039	HTHLYSR
95	PR00081	GDHRDH
80	PR00080	SDRFAMILY
64	PR00344	BCTRLSENSOR
56	PR00032	HTHARAC
45	PR00368	FADPNR
44	PR00411	PNDRDTASEI
43	PR01167	INSADHFAMILY
38	PR00035	HTHGNTR
34	PR01590	HTHFIS
33	PR00455	HTHTETR
27	PR00469	PNDRDTASEII
26	PR00184	NEISSPPORIN
23	PR00154	AMPBINDING
22	PR00111	ABHYDROLASE
22	PR00038	HTHLUXR
18	PR00419	ADXRDTASE
18	PR00412	EPOXHYDRLASE
18	PR00069	ALDKETRDTASE
17	PR01036	TCRTETB

Top 20 BlastProDom

147	PD000006	sp_Q89DA2_BRAJA_Q89DA2;
108	PD000039	sp_Q8XQM6_RALSO_Q8XQM6;
30	PD000329	sp_Q87TB6_VIBPA_Q87TB6;
25	PD000139	sp_Q891F9_CLOTE_Q891F9;
24	PD000307	sp_Q8Y2P3_RALSO_Q8Y2P3;
20	PD000288	sp_Q9PCQ4_XYLFA_Q9PCQ4;
16	PD000930	sp_Q88PS5_PSEPK_Q88PS5;
15	PD186071	sp_Q7WQP7_BORBR_Q7WQP7;
9	PD007337	sp_Q7WXF4_ALCEU_Q7WXF4;
8	PD004020	sp_Q7WR91_BORBR_Q7WR91;
8	PD001859	sp_Q7W884_BORPA_Q7W884;
7	PD011584	sp_Q88GU4_PSEPK_Q88GU4;
7	PD005328	sp_Q8PMZ5_XANAC_Q8PMZ5;
7	PD002691	sp_Q7WJP1_BORBR_Q7WJP1;
7	PD000511	sp_LEU2_PSEAE_Q9HZA3;
6	PD002334	sp_Q8PSP8_METMA_Q8PSP8;
6	PD000945	sp_Q7W7I5_BORPA_Q7W7I5;
5	PD008688	sp_Q6N9R2_RHOPA_Q6N9R2;
5	PD001857	sp_Q8EJW1_SHEON_Q8EJW1;
5	PD000940	sp_Q8ZDY5_YERPE_Q8ZDY5;

Top 20 COGs

322	COG4988	ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components
314	COG4987	ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase and permease components
314	COG1124	ABC-type dipeptide/oligopeptide/nickel transport system ATPase component
314	COG1120	ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components
314	COG0444	ABC-type dipeptide/oligopeptide/nickel transport system ATPase component
312	COG4555	ABC-type Na+ transport system ATPase component
312	COG1134	ABC-type polysaccharide/polyol phosphate transport system ATPase component
300	COG4615	ABC-type siderophore export system fused ATPase and permease components
226	COG2197	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
220	COG1028	Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)
218	COG0451	Nucleoside-diphosphate-sugar epimerase
212	COG0745	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
194	COG3437	Response regulator containing a CheY-like receiver domain and an HD-GYP domain
180	COG2201	Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
176	COG4565	Response regulator of citrate/malate metabolism
176	COG3279	Response regulator of the LytR/AlgR family
170	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
164	COG0583	Transcriptional regulator
162	COG2814	Arabinose efflux permease
161	COG1245	Predicted ATPase RNase L inhibitor (RLI) homolog

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