Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 2 |
| Arg | 5 |
| Asn | 2 |
| Asp | 3 |
| Cys | 2 |
| Gln | 1 |
| Glu | 2 |
| Gly | 4 |
| His | 1 |
| Ile | 0 |
| Leu | 7 |
| Lys | 2 |
| Met | 5 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC(p) | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 4 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig00124 | 1 | 8577 ..8502 | 0..0 | 84.28 | 68.33 |
| Ala | GGC | Contig00460 | 1 | 931 ..856 | 0..0 | 86.46 | 68.18 |
| Arg | ACG | Contig00127 | 2 | 37297..37221 | 0..0 | 87.10 | 72.06 |
| Arg | ACG | Contig00127 | 3 | 37153..37077 | 0..0 | 87.10 | 72.06 |
| Arg | CCG | Contig00652 | 1 | 3719 ..3794 | 0..0 | 82.41 | 60.01 |
| Arg | CCT | Contig00536 | 1 | 1004 ..1078 | 0..0 | 72.32 | 45.54 |
| Arg | TCT | Contig00113 | 1 | 52279..52355 | 0..0 | 88.96 | 58.47 |
| Asn | GTT | Contig00087 | 1 | 9308 ..9383 | 0..0 | 85.87 | 63.05 |
| Asn | GTT | Contig00087 | 2 | 9455 ..9530 | 0..0 | 85.87 | 63.05 |
| Asp | GTC | Contig00170 | 2 | 7663 ..7739 | 0..0 | 97.44 | 78.95 |
| Asp | GTC | Contig00460 | 3 | 561 ..485 | 0..0 | 95.34 | 76.86 |
| Asp | GTC | Contig00460 | 5 | 270 ..194 | 0..0 | 97.44 | 78.95 |
| Cys | GCA | Contig00022 | 1 | 31638 ..31717 | 0..0 | 21.50 | 16.42 |
| Cys | GCA | Contig00125 | 3 | 21445..21372 | 0..0 | 64.58 | 40.44 |
| Gln | TTG | Contig00524 | 1 | 1482 ..1558 | 0..0 | 73.12 | 51.96 |
| Glu | TTC | Contig00460 | 2 | 716 ..641 | 0..0 | 60.10 | 29.80 |
| Glu | TTC | Contig00460 | 4 | 419 ..344 | 0..0 | 60.10 | 29.80 |
| Gly | CCC | Contig00561 | 1 | 9197 ..9271 | 0..0 | 61.13 | 32.99 |
| Gly | GCC | Contig00125 | 1 | 21747..21672 | 0..0 | 89.05 | 65.61 |
| Gly | GCC | Contig00125 | 2 | 21621..21546 | 0..0 | 89.05 | 65.61 |
| Gly | TCC | Contig00611 | 2 | 308 ..235 | 0..0 | 82.17 | 64.72 |
| His | GTG | Contig00064 | 5 | 13837..13762 | 0..0 | 78.40 | 56.10 |
| Leu | CAA | Contig00140 | 1 | 26163..26247 | 0..0 | 75.09 | 47.34 |
| Leu | CAG | Contig00064 | 2 | 34905..34991 | 0..0 | 72.78 | 43.14 |
| Leu | CAG | Contig00064 | 3 | 36426..36512 | 0..0 | 72.78 | 43.14 |
| Leu | CAG | Contig00064 | 4 | 36760..36846 | 0..0 | 72.78 | 43.14 |
| Leu | GAG | Contig00024 | 1 | 20227 ..20311 | 0..0 | 63.68 | 32.34 |
| Leu | GAG | Contig00217 | 1 | 18178..18262 | 0..0 | 63.68 | 32.34 |
| Leu | TAG | Contig00525 | 1 | 22484..22570 | 0..0 | 75.32 | 50.99 |
| Lys | CTT | Contig00215 | 1 | 17059..17134 | 0..0 | 94.68 | 68.65 |
| Lys | TTT | Contig00133 | 1 | 6986 ..7062 | 0..0 | 90.90 | 66.24 |
| Met | CAT | Contig00006 | 1 | 34011..33935 | 0..0 | 88.36 | 69.62 |
| Met | CAT | Contig00064 | 1 | 22015..22091 | 0..0 | 86.01 | 58.68 |
| Met | CAT | Contig00225 | 1 | 16649..16727 | 0..0 | 71.40 | 42.88 |
| Met | CAT | Contig00382 | 1 | 3437..3513 | 0..0 | 86.01 | 58.68 |
| Met | CAT | Contig00536 | 2 | 22776..22852 | 0..0 | 85.17 | 57.44 |
| Phe | GAA | Contig00343 | 1 | 337 ..412 | 0..0 | 86.97 | 72.17 |
| Pro | CGG | Contig00243 | 1 | 3582 ..3506 | 0..0 | 81.43 | 57.93 |
| Pro | GGG | Contig00184 | 1 | 4683 ..4759 | 0..0 | 81.38 | 60.95 |
| Pro | TGG | Contig00113 | 2 | 42972..42896 | 0..0 | 88.66 | 63.17 |
| SeC(p) | TCA | Contig00089 | 1 | 26819..26728 | 0..0 | 44.81 | 0.00 |
| Ser | CGA | Contig00127 | 1 | 16012..16102 | 0..0 | 71.72 | 45.08 |
| Ser | GCT | Contig00201 | 1 | 4839 ..4932 | 0..0 | 69.97 | 43.69 |
| Ser | GGA | Contig00117 | 1 | 11789..11699 | 0..0 | 70.94 | 47.69 |
| Ser | TGA | Contig00127 | 4 | 29675..29588 | 0..0 | 77.46 | 42.15 |
| Thr | CGT | Contig00283 | 1 | 12150..12225 | 0..0 | 87.03 | 74.27 |
| Thr | GGT | Contig00611 | 3 | 209 ..135 | 0..0 | 90.12 | 63.72 |
| Thr | TGT | Contig00647 | 1 | 11300..11225 | 0..0 | 81.30 | 65.65 |
| Trp | CCA | Contig00153 | 1 | 60 ..135 | 0..0 | 84.85 | 64.79 |
| Tyr | GTA | Contig00611 | 1 | 437 ..352 | 0..0 | 66.50 | 39.10 |
| Val | CAC | Contig00172 | 1 | 7630 ..7704 | 0..0 | 91.15 | 67.86 |
| Val | GAC | Contig00189 | 1 | 8435 ..8359 | 0..0 | 90.22 | 63.10 |
| Val | GAC | Contig00632 | 1 | 16474..16550 | 0..0 | 91.08 | 63.95 |
| Val | TAC | Contig00170 | 1 | 7564 ..7639 | 0..0 | 94.99 | 74.85 |
tRNA Models
Contig00006.trna1 (34011-33935) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (33977-33975) Score: 88.36
HMM Sc=69.62 Sec struct Sc=18.74
* | * | * | * | * | * | * | *
Seq: GGCGAATTAGCTCAGTCGGTtAGAGCGACGGAATCATAATCCGCAGGtCCGGGGTTCGAATCCCTGATTCGCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig00022.trna1 (31638-31717) Length: 80 bp
Type: Cys Anticodon: GCA at 39-41 (31676-31678) Score: 21.50
HMM Sc=16.42 Sec struct Sc=5.08
* | * | * | * | * | * | * | *
Seq: GACGCAATATATTGATTttctGTatAAAGCGACGGCCTGCAAAGCCGTTCAGGCCGGTTCGACTCCGGCTCGCGCCTCCA
Str: >.>>>.>....>>.............<<...>>>>>.......<<<<<....>>>>>.......<<<<<<.<<<.<....
Contig00024.trna1 (20227-20311) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (20261-20263) Score: 63.68
HMM Sc=32.34 Sec struct Sc=31.34
* | * | * | * | * | * | * | * |
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGAAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig00064.trna1 (22015-22091) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (22049-22051) Score: 86.01
HMM Sc=58.68 Sec struct Sc=27.33
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTACCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig00064.trna2 (34905-34991) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (34939-34941) Score: 72.78
HMM Sc=43.14 Sec struct Sc=29.64
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACATCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig00064.trna3 (36426-36512) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (36460-36462) Score: 72.78
HMM Sc=43.14 Sec struct Sc=29.64
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACATCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig00064.trna4 (36760-36846) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (36794-36796) Score: 72.78
HMM Sc=43.14 Sec struct Sc=29.64
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACATCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig00064.trna5 (13837-13762) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (13804-13802) Score: 78.40
HMM Sc=56.10 Sec struct Sc=22.30
* | * | * | * | * | * | * | *
Seq: GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTCGtCGTGGGTTCGAGTCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00087.trna1 (9308-9383) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (9341-9343) Score: 85.87
HMM Sc=63.05 Sec struct Sc=22.82
* | * | * | * | * | * | * | *
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig00087.trna2 (9455-9530) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (9488-9490) Score: 85.87
HMM Sc=63.05 Sec struct Sc=22.82
* | * | * | * | * | * | * | *
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig00089.trna1 (26819-26728) Length: 92 bp
Type: SeC(p) Anticodon: TCA at 35-37 (26785-26783) Score: 44.81
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * |
Seq: GGAAGGCATTCGTATCCGGTGGTACGGCTGGACTTCAAATCCAGTTGGGGGTGTCAGACACTCCCGGGTCGGTTCGACTCCGGCTGCCTTCC
Str: >>>>>>>>..>>>>>>....<<<<<<>>>>>>.......<<<<<<..>>>>..........<<<<..>>>>>.......<<<<<<<<<<<<<
Contig00113.trna1 (52279-52355) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (52313-52315) Score: 88.96
HMM Sc=58.47 Sec struct Sc=30.49
* | * | * | * | * | * | * | *
Seq: CCGCCCTTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCACACGTTCGAATCGTGTAGGGCGGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00113.trna2 (42972-42896) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (42938-42936) Score: 88.66
HMM Sc=63.17 Sec struct Sc=25.49
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCATCTGATTTGGGATCAGAGGGtCGTAGGTTCGAATCCTATCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00117.trna1 (11789-11699) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (11755-11753) Score: 70.94
HMM Sc=47.69 Sec struct Sc=23.25
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGATGAGTGGTttAAGTCGCACGCCTGGAAAGCGTGTATAGGTTAATCGCCTATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig00124.trna1 (8577-8502) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (8544-8542) Score: 84.28
HMM Sc=68.33 Sec struct Sc=15.95
* | * | * | * | * | * | * | *
Seq: GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGtCGGGAGTTCGATCCTCCTCCGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00125.trna1 (21747-21672) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (21714-21712) Score: 89.05
HMM Sc=65.61 Sec struct Sc=23.44
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00125.trna2 (21621-21546) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (21588-21586) Score: 89.05
HMM Sc=65.61 Sec struct Sc=23.44
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00125.trna3 (21445-21372) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (21413-21411) Score: 64.58
HMM Sc=40.44 Sec struct Sc=24.14
* | * | * | * | * | * | * |
Seq: GGCGCGATAGCAAAGCGGTTATGCAGCGGCCTGCAAAGCCGTTTAGGCCGGTTCGACTCCGGCTCGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig00127.trna1 (16012-16102) Length: 91 bp
Type: Ser Anticodon: CGA at 35-37 (16046-16048) Score: 71.72
HMM Sc=45.08 Sec struct Sc=26.64
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTGGCAGAGTGGTcgAATGTACCTGACTCGAAATCAGGCGTACGGTTTCCCCGTACCGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig00127.trna2 (37297-37221) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (37263-37261) Score: 87.10
HMM Sc=72.06 Sec struct Sc=15.04
* | * | * | * | * | * | * | *
Seq: GCGGCTGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCAGCCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00127.trna3 (37153-37077) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (37119-37117) Score: 87.10
HMM Sc=72.06 Sec struct Sc=15.04
* | * | * | * | * | * | * | *
Seq: GCGGCTGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCAGCCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00127.trna4 (29675-29588) Length: 88 bp
Type: Ser Anticodon: TGA at 35-37 (29641-29639) Score: 77.46
HMM Sc=42.15 Sec struct Sc=35.31
* | * | * | * | * | * | * | * | *
Seq: GGAAGCGTGGCCGAGCGGTttAAGGCACCGGTCTTGAAAACCGGCGACGGGAAACTGTCCGTGAGTTCGAATCTCACCGCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig00133.trna1 (6986-7062) Length: 77 bp
Type: Lys Anticodon: TTT at 35-37 (7020-7022) Score: 90.90
HMM Sc=66.24 Sec struct Sc=24.66
* | * | * | * | * | * | * | *
Seq: GGGGTGGTAACTCAGTTGGTtAGAGTATCTGACTTTTAATCAGAGAGtCGAGGGTTCGAGTCCCTCCCACCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00140.trna1 (26163-26247) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (26197-26199) Score: 75.09
HMM Sc=47.34 Sec struct Sc=27.75
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCCGCAAGGCGTGCCGGTTCGATTCCGGCCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig00153.trna1 (60-135) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (93-95) Score: 84.85
HMM Sc=64.79 Sec struct Sc=20.06
* | * | * | * | * | * | * | *
Seq: AGGGGTATAGCTCAACTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGGGGGTTCGATTCCCTCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00170.trna1 (7564-7639) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (7597-7599) Score: 94.99
HMM Sc=74.85 Sec struct Sc=20.14
* | * | * | * | * | * | * | *
Seq: GGGTGCTTAGCTCAGCTGGTAGAGCGGCGCCCTTACAAGGCGTAGGtCGGGGGTTCGAACCCCTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00170.trna2 (7663-7739) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (7697-7699) Score: 97.44
HMM Sc=78.95 Sec struct Sc=18.49
* | * | * | * | * | * | * | *
Seq: GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00172.trna1 (7630-7704) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (7662-7664) Score: 91.15
HMM Sc=67.86 Sec struct Sc=23.29
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGTAGAGCACTGCCTTCACACGGCAGGGGtCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00184.trna1 (4683-4759) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (4717-4719) Score: 81.38
HMM Sc=60.95 Sec struct Sc=20.43
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGTACCTGCATGGGGTGCAGGTGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00189.trna1 (8435-8359) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (8401-8399) Score: 90.22
HMM Sc=63.10 Sec struct Sc=27.12
* | * | * | * | * | * | * | *
Seq: AGGCTCGTAGCTCAGCTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGAGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00201.trna1 (4839-4932) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (4873-4875) Score: 69.97
HMM Sc=43.69 Sec struct Sc=26.28
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGAGGTcgAAGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAaACCTGGAtCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>>.......<<.<<...>>>>>.......<<<<<<<<<<<<....
Contig00215.trna1 (17059-17134) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (17092-17094) Score: 94.68
HMM Sc=68.65 Sec struct Sc=26.03
* | * | * | * | * | * | * | *
Seq: GGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAGGtCGAGTGTTCGAGTCACTCACGCCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00217.trna1 (18178-18262) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (18212-18214) Score: 63.68
HMM Sc=32.34 Sec struct Sc=31.34
* | * | * | * | * | * | * | * |
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGAAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig00225.trna1 (16649-16727) Length: 79 bp
Type: Met Anticodon: CAT at 37-39 (16685-16687) Score: 71.40
HMM Sc=42.88 Sec struct Sc=28.52
* | * | * | * | * | * | * | *
Seq: GGGCCCCTAGCTCAtGCTtGGTtAGAGCAGCGAACTCATAATTCGTTGGtGCCGGGTTCGACTCCCGGGGGGCCCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00243.trna1 (3582-3506) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (3548-3546) Score: 81.43
HMM Sc=57.93 Sec struct Sc=23.50
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCTTAGCCtGGTAGAGCGCTACGTTCGGGACGTAGAGGcCGGAGGTTCGAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00283.trna1 (12150-12225) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (12183-12185) Score: 87.03
HMM Sc=74.27 Sec struct Sc=12.76
* | * | * | * | * | * | * | *
Seq: GCCGGTGTAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGtCGTAGGTTCGACTCCTATCTCCGGCACCA
Str: >>>>>.>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<....
Contig00343.trna1 (337-412) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (370-372) Score: 86.97
HMM Sc=72.17 Sec struct Sc=14.80
* | * | * | * | * | * | * | *
Seq: GGCCCGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGTGtCGATGGTTCGATTCCGTCCCAGGCCACCA
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....
Contig00382.trna1 (3437-3513) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3471-3473) Score: 86.01
HMM Sc=58.68 Sec struct Sc=27.33
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTACCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig00460.trna1 (931-856) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (898-896) Score: 86.46
HMM Sc=68.18 Sec struct Sc=18.28
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00460.trna2 (716-641) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (682-680) Score: 60.10
HMM Sc=29.80 Sec struct Sc=30.30
* | * | * | * | * | * | * | *
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig00460.trna3 (561-485) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (527-525) Score: 95.34
HMM Sc=76.86 Sec struct Sc=18.48
* | * | * | * | * | * | * | *
Seq: GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00460.trna4 (419-344) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (385-383) Score: 60.10
HMM Sc=29.80 Sec struct Sc=30.30
* | * | * | * | * | * | * | *
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig00460.trna5 (270-194) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (236-234) Score: 97.44
HMM Sc=78.95 Sec struct Sc=18.49
* | * | * | * | * | * | * | *
Seq: GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00524.trna1 (1482-1558) Length: 77 bp
Type: Gln Anticodon: TTG at 35-37 (1516-1518) Score: 73.12
HMM Sc=51.96 Sec struct Sc=21.16
* | * | * | * | * | * | * | *
Seq: AGGGGAGTCGCCAAGTTGGTcAAGGCACCGGATTTTGATTCCGGCATgCGAGGGTTCGAGTCCTTCCTCCCCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00525.trna1 (22484-22570) Length: 87 bp
Type: Leu Anticodon: TAG at 35-37 (22518-22520) Score: 75.32
HMM Sc=50.99 Sec struct Sc=24.33
* | * | * | * | * | * | * | * | *
Seq: GCGTGAGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCCGCAAGGGTGTGCCGGTTCGAGTCCGGCCTCACGCACCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig00536.trna1 (1004-1078) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (1037-1039) Score: 72.32
HMM Sc=45.54 Sec struct Sc=26.78
* | * | * | * | * | * | * |
Seq: CTCCCCGTAGTTCAATGGAtAGAACAAGCGCCTCCTAAGCGCTAGATACAGGTTCGATTCCTGTCGGGGGGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig00536.trna2 (22776-22852) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (22810-22812) Score: 85.17
HMM Sc=57.44 Sec struct Sc=27.73
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig00561.trna1 (9197-9271) Length: 75 bp
Type: Gly Anticodon: CCC at 34-36 (9230-9232) Score: 61.13
HMM Sc=32.99 Sec struct Sc=28.14
* | * | * | * | * | * | * |
Seq: GCGGGCGTCGTATAATGGCcATTACCTCAGCTTCCCAAGCTGATGACGTGGGTTCGATTCCCATCGCCCGCTCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig00611.trna1 (437-352) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (403-401) Score: 66.50
HMM Sc=39.10 Sec struct Sc=27.40
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTGCCCGAGTGGCtaAAGGGGGCAGACTGTAAATCTGTTGGCTTACGCCTaCGTTGGTTCGAATCCAACCTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig00611.trna2 (308-235) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (276-274) Score: 82.17
HMM Sc=64.72 Sec struct Sc=17.45
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00611.trna3 (209-135) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (177-175) Score: 90.12
HMM Sc=63.72 Sec struct Sc=26.40
* | * | * | * | * | * | * |
Seq: GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGGCAGTTCGATCCTGCCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00632.trna1 (16474-16550) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (16508-16510) Score: 91.08
HMM Sc=63.95 Sec struct Sc=27.13
* | * | * | * | * | * | * | *
Seq: AGGCTCGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAATCCAATCGAGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig00647.trna1 (11300-11225) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (11267-11265) Score: 81.30
HMM Sc=65.65 Sec struct Sc=15.65
* | * | * | * | * | * | * | *
Seq: GCCGGCTTAGCTCATCTGGTAGAGCAGTTGATTTGTAATCATCAGGtGGCGGGTTCGAGTCCTGCAGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<....
Contig00652.trna1 (3719-3794) Length: 76 bp
Type: Arg Anticodon: CCG at 34-36 (3752-3754) Score: 82.41
HMM Sc=60.01 Sec struct Sc=22.40
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAATGGAtAGAGTACTGCCCTCCGAAGGCAGGGGtTGCTGGTTCGATCCCAGCCGGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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