Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig00008	RNAmmer-1.2	rRNA	48	1568	1917.8	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------
 ##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-07-18
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig00009	RNAmmer-1.2	rRNA	85	2964	3528.4	+	.	23s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig00008_48-1568_DIR- /molecule=16s_rRNA /score=1917.8
 AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAAC
 GGCAGCACGGGTGCTTGCACCTGGTGGCGAGTGGCGAACGGGTGAGTAATACATCGGAAC
 ATGTCCTGTAGTGGGGGATAGCCCGGCGAAAGCCGGATTAATACCGCATACGATCCATGG
 ATGAAAGCGGGGGACCTTCGGGCCTCGCGCTATAGGGTTGGCCGATGGCTGATTAGCTAG
 TTGGTGGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGTCTGAGAGGACGACCAGC
 CACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGA
 CAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGTGTGAAGAAGGCCTTCGGGTTGTAA
 AGCACTTTTGTCCGGAAAGAAATCCTTGGTTCTAATACAGCCGGGGGATGACGGTACCGG
 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGT
 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTGCTAAGACCGATGTGAAATC
 CCCGGGCTCAACCTGGGAACTGCATTGGTGACTGGCAGGCTAGAGTATGGCAGAGGGGGG
 TAGAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCGATGGCGAAGG
 CAGCCCCCTGGGCCAATACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG
 ATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGGATTCATTTCCTTA
 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTACGGTCGCAAGATTAAAACTC
 AAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGATGTGGATTAATTCGATGCAACGC
 GAAAAACCTTACCTACCCTTGACATGGTCGGAATCCCGCTGAGAGGTGGGAGTGCTCGAA
 AGAGAACCGGCGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGT
 TAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTTGCTACGCAAGAGCACTCTAAGGAG
 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGG
 GTAGGGCTTCACACGTCATACAATGGTCGGAACAGAGGGTTGCCAACCCGCGAGGGGGAG
 CTAATCCCAGAAAACCGATCGTAGTCCGGATTGCACTCTGCAACTCGAGTGCATGAAGCT
 GGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTGTACA
 CACCGCCCGTCACACCATGGGAGTGGGTTTTACCAGAAGTGGCTAGTCTAACCGCAAGGA
 GGACGGTCACCACGGTAGGATTCATGACTGGGGTGAAGTCGTAACAAGGTAGCCGTATCG
 GAAGGTGCGGCTGGATCACCT
 >rRNA_Contig00009_85-2964_DIR+ /molecule=23s_rRNA /score=3528.4
 TCAAGCGAACAAGTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGT
 AGCCTGCGAAAAGCTACGGGGAGCTGGCAAACGAGCTTTGATCCGTAGATGTCCGAATGG
 GGAAACCCACTCCTTTTGGAGTATCCATGGCTGAATACATAGGCCATGTGAAGCGAACGC
 GGTGAACTGAAACATCTAAGTAACCGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG
 TGGCGAGCGAAATGGGATGAGCCTTGTACTCTTTATTTGTATTGTTAGCCGAACGCTCTG
 GAAAGTGCGGCCATAGCAGGTGATAGCCCTGTAGGCGAAAACAGTATGAAAGAACTAGGT
 GTACGACAAGTAGGGCGGGACACGTGAAATCCTGTCTGAAGATGGGGGGACCATCCTCCA
 AGGCTAAATACTCGTGATCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGA
 ACCCCGGGAGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTC
 GTAAGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACGTTCAGTAGCAAGC
 TTAACCGTATAGGGCAGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTTCAGTTGCTGGGC
 GTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCGGTAACACGTACTG
 GAGGTCCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGG
 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCGTGTC
 TCACCTTCGGGGGTAGAGCACTGTCATGGTTGGGGGGTCTATTGCAGATTACCCCGCCAT
 AGCAAACTCCGAATACCGAAGAGTGCAATCACGGGAGACAGACATCGGGTGCTAACGTCC
 GGTGTCAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCCAAATATAGCTAAGTGGG
 AAACGAAGTGGGAAGGCTAAAACAGTCAGGAGGTTGGCTTAGAAGCAGCCACCCTTTAAA
 GAAAGCGTAATAGCTCACTGATCGAGTCGTCCTGCGCGGAAGATGTAACGGGGCTAAGCT
 ATATACCGAAGCTGCGGATGCGAGCTATGCTCGCATGGTAGGAGAGCGTTCCGTAAGCCT
 GCGAAGGTGCGTTGAAAAGCGTGCTGGAGGTATCGGAAGTGCGAATGCTGACATGAGTAG
 CGATAAAGGGGGTGAAAGGCCCCCTCGCCGTAAGCCCAAGGTTTCCTACGCAACGTTCAT
 CGGCGTAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAAATGCGTAGCTGATGGGAAGCAGG
 TCAATATTCCTGCACCATTGTTAGATGCGATGGGGGGACGGATCGCGGAAGGTTGTCCGG
 GTGTTGGAAGTCCCGGTCGCTGCATTGGAGAAGGCGCTTAGGCAAATCCGGGCGCGCAAT
 TCAAGGGTGTGGCGCGAGCTCCTTAGGGAGCGAAGCAATTGGAAGTGGTTCCAAGAAAAG
 CCTCTAAGCTTCAGTCTAACGATGACCGTACCGCAAACCGACACAGGTGGGCGAGATGAG
 TATTCTAAGGCGCTTGAGAGAACTCGGGAGAAGGAACTCGGCAAATTGGTACCGTAACTT
 CGGGATAAGGTACGCCCTTGTAGCTTGACTGGCCTGCGCCAGGAGGGTGAAGGGGTTGCA
 ATAAACTGGTGGCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGA
 CGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGATTAAATGATGGGGTGCAAGCTCTTG
 ATTGAAGTCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTT
 GTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCCGAG
 ACTCAGCGAAGTTGAAGTGTTTGTGATGATGCAATCTACCCGCGGCTAGACGGAAAGACC
 CCATGAACCTTTACTGTAGCTTTGCATTGGACTTTGAACCGATCTGTGTAGGATAGGTGG
 GAGGCTATGAAACCGGAACGCTAGTTTCGGTGGAGCCGTCCTTGAAATACCACCCTGGTT
 TGTTTGAGGTTCTAACCTTGGCCCGTGATCCGGGTCGGGGACAGTGCATGGTAGGCAGTT
 TGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGTACGAAGGTACGCTAGGTACGG
 TCGGAAATCGTGCTGATAGTGCAATGGCATAAGCGTGCTTAACTGCGAGACCGACAAGTC
 GAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTC
 AACGGATAAAAGGTACTCTGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACG
 GCGGTGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGTAGCCGGTCCCAAGG
 GTATGGCTGTTCGCCATTTAAAGAGGTACGTGAGCTGGGTTTAAAACGTCGTGAGACAGT
 TTGGTCCCTATCTGCCGTGGGCGTTGGATATTTGAAGGGGGCTGCTCCTAGTACGAGAGG
 ACCGGAGTGGACGAACCTCTGGTGTACCGGTTGTCACGCCAGTGGCATCGCCGGGTAGCT
 ATGTTCGGAAGAGATAACCGCTGAAAGCATCTAAGCGGGAAACTCGCCTTAAGATGAGAT
 ATCCCTGGGGACTAGATCCCCTTGAAGGGTCGTTCGAGACCAGGACGTTGATAGGTCAGG
 TGTGTAAGCGCAGTAATGCGTTCAGCTAACTGATACTAATTGCCCGTAAGGCTTGATCCT