Microbial Genomes
JGI Microbials
Microbial genomes sequenced by the DOE
Joint Genome Institute
(JGI), analyzed, updated and summarized. These data are a work in progress and are subject to frequent change.
Archaea
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Caldivirga maquilingensis IC-167, DSM 13496
Candidatus Amoebophilus asiaticus 5a2
Ferroplasma acidarmanus fer1
Halorubrum lacusprofundi ATCC 49239
Korarchaeum cryptofilum OPF8
Methanococcoides burtonii DSM 6242
Methanococcus aeolicus Nankai-3
Methanococcus maripaludis C5
Methanococcus maripaludis C6
Methanococcus maripaludis C7
Methanococcus vannielii SB
Methanococcus voltae A3
Methanocorpusculum labreanum Z
Methanoculleus marisnigri JR1
Methanoregula boonei 6A8
Methanosarcina barkeri fusaro
Nitrosopumilus maritimus SCM1
Pyrobaculum arsenaticum DSM 13514
Pyrobaculum calidifontis JCM 11548
Pyrobaculum islandicum DSM 4184
Staphylothermus marinus F1, ATCC 43588, DSM 3639
Sulfolobus islandicus L.D.8.5
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus U.3.28
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Sulfurihydrogenibium sp. Y03AOP1
Thermofilum pendens Hrk 5
Thermoproteus neutrophilus V24Sta
Thermus aquaticus Y51MC23
Eubacteria
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Acidiphilium cryptum JF-5
Acidithiobacillus ferrooxidans Markosian, ATCC 53993
Acidobacteria bacterium Ellin 345
Acidothermus cellulolyticus 11B, ATCC 43068
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Actinobacillus succinogenes 130Z
Akkermansia muciniphila ATCC BAA-835
Alkalilimnicola ehrlichei MLHE-1, ATCC BAA-1101
Alkaliphillus metalliredigenes QYMF
Alkaliphilus oremlandii OhILAs
Anabaena variabilis ATCC 29413
Anaeromyxobacter dehalogenans 2CP-C
Anaeromyxobacter dehalogenans strain 2CP-1
Anaeromyxobacter sp. Fw109-5
Anaeromyxobacter sp. K
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Azotobacter vinelandii
Bacillus cereus subsp. cytotoxis NVH 391-98
Bacillus coagulans 36D1
Bacillus selenitireducens MLS-10, ATCC 700615
Bacillus weihenstephanensis KBAB4
Beijerinckia indica subsp. indica ATCC 9039
Bifidobacterium longum DJO10A
Bradyrhizobium sp. BTAi1
Brevibacterium linens
Burkholderia ambifaria IOP40-10
Burkholderia ambifaria MC40-6
Burkholderia ambifaria MEX-5
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cepacia AMMD
Burkholderia graminis C4D1M
Burkholderia multivorans ATCC 17616
Burkholderia phymatum STM815
Burkholderia phytofirmans PsJN
Burkholderia sp. 383
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Caldicellulosiruptor saccharolyticus DSM8903
Caulobacter sp. K31
Chlorobaculum parvum NCIB 8327
Chlorobium chlorochromatii CaD3
Chlorobium ferrooxidans
Chlorobium limicola DSM 245
Chlorobium phaeobacteroides BS1
Chlorobium phaeobacteroides DSM 266
Chloroflexus aggregans
Chloroflexus aurantiacus J-10-fl
Chloroflexus sp. Y-400-fl
Chloroherpeton thalassium ATCC 35110
Chromohalobacter salexigens DSM 3043
Chthoniobacter flavus Ellin428
Clostridium beijerinckii NCIMB 8052
Clostridium cellulolyticum H10
Clostridium phytofermentans ISDg, ATCC 700394
Clostridium thermocellum ATCC 27405
Clostridium thermocellum JW20 DSM 4150
Comamonas testosteroni KF-1
Crocosphaera watsonii WH 8501
Cupriavidus metallidurans CH34
Cyanothece PCC 7425
Cyanothece PCC 8802
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7822
Cyanothece sp. PCC 8801
Cytophaga hutchinsonii ATCC 33406
Dechloromonas aromatica RCB
Dehalococcoides sp. BAV1
Dehalococcoides sp. VS
Deinococcus geothermalis DSM 11300
Delftia acidovorans SPH-1
Desulfatibacillum alkenivorans AK-01
Desulfitobacterium hafniense DCB-2
Desulfococcus oleovorans Hxd3
Desulforudis audaxviator
Desulforudis audaxviator MP104C
Desulfotomaculum reducens MI-1
Desulfovibrio desulfuricans G20
Desulfovibrio vulgaris subsp. vulgaris DP4
Desulfuromonas acetoxidans
Dinoroseobacter shibae DFL 12
Ehrlichia canis Jake
Ehrlichia chaffeensis sapulpa
Elusimicrobium minutum Pei191
Enterobacter sp. 638
Enterococcus faecium DO
Escherichia coli C (ATCC 8739)
Exiguobacterium sibiricum 255-15
Exiguobacterium sp. AT1b
Fervidobacterium nodosum Rt17-B1
Flavobacterium johnsoniae UW101
Francisella philomiragia ATCC25017
Francisella tularensis subsp. holarctica OR96-0463
Frankia sp. CcI3
Frankia sp. EAN1pec
Geobacillus sp. G11MC16
Geobacillus sp. WCH70
Geobacillus sp. Y412MC10
Geobacter bemidjiensis Bem
Geobacter lovleyi SZ
Geobacter metallireducens GS-15
Geobacter sp. FRC-32
Geobacter sp. M21 type strain M21
Geobacter uraniireducens RF4
Gluconacetabacter diazotrophicus PAl5
Haemophilus somnus 129PT
Haemophilus somnus 2336
Halorhodospira halophila SL1
Halothermothrix orenii H 168
Herpetosiphon aurantiacus DSM 785
Hydrogenobaculum acidophilum Y04AAS1
Ignicoccus hospitalis KIN4/I
Jannaschia sp. CCS1
Kineococcus radiotolerans SRS30216
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus gasseri ATCC 33323
Lactobacillus reuteri 100-23
Lactobacillus reuteri F275, DSM 20016
Lactococcus lactis subsp. Cremoris SK11
Leptothrix cholodnii SP-6
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Magnetococcus MC-1
Magnetospirillum magnetotacticum MS-1
Maricaulis maris MCS10
Marinobacter aquaeoloi VT8
Marinomonas sp. MWYL1
Mesorhizobium sp. BNC1
Metallosphaera sedula DSM 5348T
Methanosaeta thermophila PT
Methanospirillum hungatei JF-1, DSM 864
Methylibium petroleophilum PM1
Methylobacillus flagellatus KT
Methylobacterium chloromethanicum CM4
Methylobacterium extorquens PA1
Methylobacterium nodulans ORS 2060
Methylobacterium populi BJ001
Methylobacterium radiotolerans JCM 2831
Methylobacterium sp. 4-46
Methylocella silvestris BL2, DSM 15510
Micrococcus luteus Fleming strain 2665
Mono Lake deltaproteobacter MLMS-1
Moorella thermoacetica ATCC 39073
Mycobacterium gilvum PYR-GCK
Mycobacterium sp. JLS
Mycobacterium sp. KMS
Mycobacterium sp. MCS
Mycobacterium vanbaalenii Pyr-1
Natrananaerobius thermophilus JW/NM-WN-LF
Nitrobacter hamburgensis X14
Nitrobacter winogradskyi Nb-255, ATCC 25391
Nitrosococcus oceani ATCC 19707
Nitrosomonas europaea ATCC 19718
Nitrosomonas eutropha C91
Nitrosospira multiformis Surinam, ATCC 25196
Nocardioides sp. JS614
Nostoc punctiforme ATCC 29133
Novosphingobium aromaticivorans DSM 12444
Ochrobactrum anthropii ATCC 49188
Oenococcus oeni PSU-1
Opitutaceae bacterium TAV2
Paenibacillus sp. JDR-2
Paracoccus denitrificans PD1222
Parvibaculum lavamentivorans DS-1
Pediococcus pentosaceus ATCC 25745
Pelobacter carbinolicus DSM 2380
Pelobacter propionicus DSM 2379
Pelodictyon luteolum DSM 273
Pelodictyon phaeoclathratiforme BU-1 DSM 5477
Petrotoga mobilis SJ95
Polaromonas napthalenivorans CJ2
Polaromonas sp. JS666
Polynucleobacter necessarius STIR1
Polynucleobacter sp. QLW-P1DMWA-1
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9312
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus NATL2A
Prochlorococcus marinus subsp. pastoris CCMP1986
Prosthecochloris aestuarii DSM 271
Prosthecochloris vibrioformis DSM 265
Pseudoalteromonas atlantica T6c
Pseudomonas fluorescens Pf0-1
Pseudomonas mendocina ymp
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida W619
Pseudomonas syringae B728a
Psychrobacter arcticus 273-4
Psychrobacter cryohalolentis K5
Psychrobacter sp. PRwf-1
Psychromonas ingrahamii 37
Ralstonia eutropha JMP134
Ralstonia pickettii 12D
Ralstonia pickettii 12J
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium leguminosarum bv. trifolii WSM2304
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides ATCC 17029
Rhodoferax ferrireducens DSM 15236
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris TIE-1
Rhodospirillum rubrum ATCC 11170
Roseiflexus castenholzii DSM 13941
Roseiflexus sp. RS1
Rubrobacter xylanophilus DSM 9941
Ruthia (Candidatus) magnifica Cm (Calyptogena magnifica)
Saccharophagus degradans 2-40
Salinispora arenicola CNS-205
Salinospora tropica CNB440
Serratia proteamaculans 568
Shewanella amazonensis SB2B
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella baltica OS223
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella putrefaciens 200
Shewanella putrefaciens CN-32
Shewanella sediminis HAW-EB3
Shewanella sp. ANA-3
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. W3-18-1
Shewanella woodyi ATCC 51908
Silicibacter sp. TM1040
Sinorhizobium medicae WSM419
Solibacter usitatus Ellin6076
Sphingomonas wittichii RW1
Sphingopyxis alaskensis RB2256
Staphylococcus aureus JH1
Staphylococcus aureus JH9
Stenotrophomonas maltophilia R551-3
Streptococcus suis 89/1591
Streptococcus thermophilus LMD-9
Sulfurimonas denitrificans DSM1251
Synechococcus elongatus PCC 7942
Synechococcus sp. CC9605 (Oligotrophic)
Synechococcus sp. CC9902 (Coastal)
Synechococcus sp. WH8102
Synthophobacter fumaroxidans MPOB
Syntrophomonas wolfei Gottingen DSM 2245B
Thauera sp. MZ1T
Thermoanaerobacter pseudethanolicus 39E
Thermoanaerobacter sp. X514
Thermobifida fusca YX
Thermosinus caboxydivorans Nor1T
Thermosipho melanesiensis BI429
Thermotoga lettingae TMO
Thermotoga petrophila RKU-1
Thermotoga sp. RQ2
Thiobacillus denitrificans ATCC 25259
Thiomicrospira crunogena XCL-2
Trichodesmium erythraeum IMS101
Verminephrobacter eiseniae EF01-2
Victivallis vadensis
Xanthobacter autotrophicus Py2
Xylella fastidiosa Ann 1 / Oleander
Xylella fastidiosa Dixon / almond
Xylella fastidiosa M12
Yersinia pestis strain 15-70(Pestoides F)
Yersinia pestis strain Nepal516
Yersinia pestis strain antiqua
Yersinia pseudotuberculosis PB1/+
Yersinia pseudotuberculosis YPIII
Other Microbials
Selected Pathogens
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N. europaea ATCC 19718
P. marinus MIT 9313
P. marinus subsp. pastoris CCMP1986
R. palustris CGA009
S. sp. WH8102
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